Wall clock time and date at job start Mon Mar 30 2020 06:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46722 * 2 1 4 4 C 1.53002 * 109.47358 * 240.00097 * 2 1 3 5 5 C 1.50696 * 109.46919 * 174.99744 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 N 1.46500 * 109.47080 * 120.00096 * 2 1 3 14 14 C 1.39682 * 119.99963 * 275.00059 * 13 2 1 15 15 C 1.38906 * 120.07413 * 359.72812 * 14 13 2 16 16 C 1.38109 * 119.92482 * 179.76983 * 15 14 13 17 17 C 1.38284 * 120.07246 * 0.50276 * 16 15 14 18 18 C 1.50691 * 119.92438 * 179.76821 * 17 16 15 19 19 C 1.53779 * 113.61781 * 37.47957 * 18 17 16 20 20 C 1.53776 * 87.08401 * 220.01982 * 19 18 17 21 21 C 1.53778 * 113.61906 * 299.97831 * 18 17 16 22 22 C 1.38294 * 120.14858 * 359.74918 * 17 16 15 23 23 C 1.38104 * 120.07578 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.47210 * 60.00163 * 1 2 3 25 25 H 1.09002 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47356 * 299.99537 * 1 2 3 27 27 H 1.09000 * 109.46497 * 55.00010 * 4 2 1 28 28 H 1.08999 * 109.46623 * 295.00074 * 4 2 1 29 29 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 30 30 H 0.96996 * 119.99912 * 95.00275 * 13 2 1 31 31 H 1.08004 * 120.04042 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.96467 * 180.25208 * 16 15 14 33 33 H 1.09006 * 112.85175 * 168.78280 * 18 17 16 34 34 H 1.09005 * 113.61270 * 334.56633 * 19 18 17 35 35 H 1.09000 * 113.61930 * 105.46578 * 19 18 17 36 36 H 1.09002 * 113.61341 * 270.88239 * 20 19 18 37 37 H 1.08994 * 113.61865 * 139.98147 * 20 19 18 38 38 H 1.09000 * 113.61837 * 254.53368 * 21 18 17 39 39 H 1.09007 * 113.61309 * 25.34962 * 21 18 17 40 40 H 1.07997 * 119.95865 * 180.02562 * 22 17 16 41 41 H 1.07991 * 120.03530 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0853 -0.5395 7 6 4.2305 -1.1925 -2.3583 8 7 3.5760 -1.8317 -3.3031 9 14 6.0921 -1.0599 -2.4373 10 1 6.6847 -1.6860 -1.2282 11 1 6.5871 -1.7600 -3.6498 12 1 6.4844 0.3711 -2.4965 13 7 2.0184 -0.6906 1.1962 14 6 2.1517 0.0062 2.3994 15 6 1.8272 1.3553 2.4621 16 6 1.9557 2.0401 3.6546 17 6 2.4168 1.3867 4.7827 18 6 2.5607 2.1384 6.0808 19 6 1.4456 3.1694 6.3226 20 6 2.5357 4.1020 6.8762 21 6 3.5337 3.3265 6.0001 22 6 2.7458 0.0448 4.7224 23 6 2.6142 -0.6473 3.5346 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6055 -0.2616 -2.1369 28 1 1.7517 -1.7715 -1.2055 29 1 2.6093 -1.9003 -3.2623 30 1 2.2491 -1.6317 1.1526 31 1 1.4708 1.8673 1.5804 32 1 1.6997 3.0881 3.7051 33 1 2.7425 1.4823 6.9320 34 1 0.9826 3.5349 5.4059 35 1 0.7168 2.8571 7.0706 36 1 2.7099 3.9835 7.9457 37 1 2.4115 5.1434 6.5795 38 1 4.4907 3.1411 6.4878 39 1 3.6428 3.7341 4.9950 40 1 3.1052 -0.4626 5.6054 41 1 2.8717 -1.6951 3.4881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709995255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:14 Heat of formation + Delta-G solvation = 21.096082 kcal Electronic energy + Delta-G solvation = -18844.143242 eV Core-core repulsion = 16109.266461 eV Total energy + Delta-G solvation = -2734.876782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82729 -38.18871 -35.99305 -33.15657 -31.34179 -30.48608 -28.35941 -27.08256 -25.62598 -24.58440 -23.03591 -22.74088 -21.20660 -19.75878 -19.10096 -17.29627 -16.73064 -15.83211 -15.56122 -14.97270 -14.34337 -13.82738 -13.66634 -13.40078 -13.21588 -13.01750 -12.98881 -12.54136 -12.44930 -12.18145 -11.83504 -11.65069 -11.46151 -11.16140 -11.04901 -10.76671 -10.63427 -10.45858 -10.29559 -10.14295 -10.11609 -9.72071 -9.37043 -8.58133 -8.54554 -8.38999 -6.74724 -6.40138 -4.09841 1.82590 1.99813 3.42884 3.43746 3.62725 4.09531 4.19769 4.51586 4.62337 4.69995 4.71168 5.06108 5.22242 5.29711 5.37032 5.40452 5.58672 5.63044 5.67843 5.72363 5.77698 5.82676 5.88192 5.90465 5.91475 5.97917 6.19153 6.19722 6.33332 6.39472 6.41739 6.51455 6.67042 6.78107 6.82600 7.07589 7.16391 7.22855 7.37354 8.01436 8.14593 8.40203 8.43253 8.83726 9.61459 11.00097 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.004340 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.315791 B = 6450.560042 C = 7002.469221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 H 0.068 0.932 4 C 0.002 3.998 5 C -0.596 4.596 6 H 0.051 0.949 7 C 0.015 3.985 8 N -0.913 5.913 9 Si 1.067 2.933 10 H -0.288 1.288 11 H -0.283 1.283 12 H -0.288 1.288 13 N -0.717 5.717 14 C 0.234 3.766 15 C -0.204 4.204 16 C -0.066 4.066 17 C -0.153 4.153 18 C -0.058 4.058 19 C -0.136 4.136 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.066 4.066 23 C -0.208 4.208 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.020 0.980 28 H 0.011 0.989 29 H 0.268 0.732 30 H 0.399 0.601 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 7.733 17.512 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.035 4.035 5 C -0.635 4.635 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.549 5.549 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.208 1.208 12 H -0.215 1.215 13 N -0.341 5.341 14 C 0.126 3.874 15 C -0.227 4.227 16 C -0.084 4.084 17 C -0.156 4.156 18 C -0.076 4.076 19 C -0.173 4.173 20 C -0.183 4.183 21 C -0.171 4.171 22 C -0.085 4.085 23 C -0.231 4.231 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.029 0.971 29 H 0.078 0.922 30 H 0.234 0.766 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.865 7.408 16.389 18.212 hybrid contribution -1.216 0.010 0.814 1.463 sum -4.081 7.418 17.203 19.173 Atomic orbital electron populations 1.22312 0.97743 1.01479 1.00864 1.21012 0.91047 0.97067 0.85937 0.91386 1.19506 0.97417 0.95085 0.91474 1.21991 0.91462 1.38586 1.11420 0.93071 1.25821 1.06867 0.93521 0.92618 1.70802 1.10254 1.40066 1.33822 0.83562 0.74477 0.76341 0.76080 1.21492 1.20812 1.21452 1.44941 1.70302 1.12374 1.06498 1.17971 0.91552 0.91463 0.86366 1.20648 1.10097 0.93361 0.98562 1.20605 0.97327 0.98629 0.91860 1.19244 1.07308 0.94173 0.94849 1.21278 0.96576 0.94472 0.95282 1.23047 0.96358 0.96789 1.01152 1.22839 0.97363 0.98620 0.99437 1.23012 0.97265 0.96497 1.00348 1.20627 0.97682 0.93555 0.96606 1.20526 1.09825 1.00077 0.92640 0.92388 0.93038 0.93411 0.96156 0.97101 0.92197 0.76647 0.86325 0.86983 0.89405 0.89852 0.91831 0.90515 0.91732 0.91808 0.89957 0.87056 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.44 37.16 0.35 -2.44 16 2 C 0.15 3.08 2.22 -67.93 -0.15 2.93 16 3 H 0.07 1.41 6.47 -51.93 -0.34 1.08 16 4 C 0.00 0.06 3.83 -27.88 -0.11 -0.05 16 5 C -0.60 -16.47 8.84 -34.44 -0.30 -16.78 16 6 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 8 N -0.91 -27.55 13.65 55.43 0.76 -26.80 16 9 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.72 -13.60 4.96 -52.16 -0.26 -13.86 16 14 C 0.23 4.12 6.64 -83.79 -0.56 3.57 16 15 C -0.20 -3.38 8.86 -39.38 -0.35 -3.73 16 16 C -0.07 -0.95 8.60 -39.61 -0.34 -1.29 16 17 C -0.15 -2.10 5.29 -104.59 -0.55 -2.65 16 18 C -0.06 -0.64 3.98 -90.97 -0.36 -1.00 16 19 C -0.14 -1.33 7.45 -25.92 -0.19 -1.52 16 20 C -0.15 -1.27 8.08 -25.92 -0.21 -1.48 16 21 C -0.13 -1.37 7.55 -25.92 -0.20 -1.56 16 22 C -0.07 -0.94 9.70 -39.61 -0.38 -1.32 16 23 C -0.21 -3.32 9.90 -39.38 -0.39 -3.71 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.75 7.75 -51.93 -0.40 0.35 16 27 H 0.02 0.52 8.00 -51.93 -0.42 0.10 16 28 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 29 H 0.27 8.00 7.22 -40.82 -0.29 7.70 16 30 H 0.40 7.62 8.61 -40.82 -0.35 7.27 16 31 H 0.12 1.96 6.15 -52.48 -0.32 1.64 16 32 H 0.11 1.40 6.65 -52.49 -0.35 1.05 16 33 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.08 0.84 6.30 -51.93 -0.33 0.51 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.91 7.72 -51.93 -0.40 0.51 16 40 H 0.11 1.33 8.05 -52.49 -0.42 0.91 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -29.41 329.35 -10.08 -39.49 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.62 Total: 6.58 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -3.84 Total: -30.70 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.50 Total: -40.65 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.41 -10.08 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.586 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds