Wall clock time and date at job start Mon Mar 30 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46722 * 2 1 4 4 C 1.53002 * 109.47358 * 240.00097 * 2 1 3 5 5 C 1.50696 * 109.46919 * 174.99744 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 N 1.46500 * 109.47080 * 120.00096 * 2 1 3 14 14 C 1.39682 * 119.99963 * 275.00059 * 13 2 1 15 15 C 1.38906 * 120.07413 * 359.72812 * 14 13 2 16 16 C 1.38109 * 119.92482 * 179.76983 * 15 14 13 17 17 C 1.38284 * 120.07246 * 0.50276 * 16 15 14 18 18 C 1.50691 * 119.92438 * 179.76821 * 17 16 15 19 19 C 1.53779 * 113.61781 * 37.47957 * 18 17 16 20 20 C 1.53776 * 87.08401 * 220.01982 * 19 18 17 21 21 C 1.53778 * 113.61906 * 299.97831 * 18 17 16 22 22 C 1.38294 * 120.14858 * 359.74918 * 17 16 15 23 23 C 1.38104 * 120.07578 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.47210 * 60.00163 * 1 2 3 25 25 H 1.09002 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47356 * 299.99537 * 1 2 3 27 27 H 1.09000 * 109.46497 * 55.00010 * 4 2 1 28 28 H 1.08999 * 109.46623 * 295.00074 * 4 2 1 29 29 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 30 30 H 0.96996 * 119.99912 * 95.00275 * 13 2 1 31 31 H 1.08004 * 120.04042 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.96467 * 180.25208 * 16 15 14 33 33 H 1.09006 * 112.85175 * 168.78280 * 18 17 16 34 34 H 1.09005 * 113.61270 * 334.56633 * 19 18 17 35 35 H 1.09000 * 113.61930 * 105.46578 * 19 18 17 36 36 H 1.09002 * 113.61341 * 270.88239 * 20 19 18 37 37 H 1.08994 * 113.61865 * 139.98147 * 20 19 18 38 38 H 1.09000 * 113.61837 * 254.53368 * 21 18 17 39 39 H 1.09007 * 113.61309 * 25.34962 * 21 18 17 40 40 H 1.07997 * 119.95865 * 180.02562 * 22 17 16 41 41 H 1.07991 * 120.03530 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0853 -0.5395 7 6 4.2305 -1.1925 -2.3583 8 7 3.5760 -1.8317 -3.3031 9 14 6.0921 -1.0599 -2.4373 10 1 6.6847 -1.6860 -1.2282 11 1 6.5871 -1.7600 -3.6498 12 1 6.4844 0.3711 -2.4965 13 7 2.0184 -0.6906 1.1962 14 6 2.1517 0.0062 2.3994 15 6 1.8272 1.3553 2.4621 16 6 1.9557 2.0401 3.6546 17 6 2.4168 1.3867 4.7827 18 6 2.5607 2.1384 6.0808 19 6 1.4456 3.1694 6.3226 20 6 2.5357 4.1020 6.8762 21 6 3.5337 3.3265 6.0001 22 6 2.7458 0.0448 4.7224 23 6 2.6142 -0.6473 3.5346 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6055 -0.2616 -2.1369 28 1 1.7517 -1.7715 -1.2055 29 1 2.6093 -1.9003 -3.2623 30 1 2.2491 -1.6317 1.1526 31 1 1.4708 1.8673 1.5804 32 1 1.6997 3.0881 3.7051 33 1 2.7425 1.4823 6.9320 34 1 0.9826 3.5349 5.4059 35 1 0.7168 2.8571 7.0706 36 1 2.7099 3.9835 7.9457 37 1 2.4115 5.1434 6.5795 38 1 4.4907 3.1411 6.4878 39 1 3.6428 3.7341 4.9950 40 1 3.1052 -0.4626 5.6054 41 1 2.8717 -1.6951 3.4881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709995255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:13 Heat of formation + Delta-G solvation = 7.015312 kcal Electronic energy + Delta-G solvation = -18844.753830 eV Core-core repulsion = 16109.266461 eV Total energy + Delta-G solvation = -2735.487370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89192 -39.30895 -37.43079 -35.10982 -32.82960 -31.69827 -29.58137 -28.95858 -26.38968 -25.67369 -24.96440 -24.00199 -22.43503 -21.22863 -19.96553 -19.04997 -18.35845 -16.86620 -16.82393 -16.03149 -15.70597 -15.53364 -15.39954 -14.78031 -14.48661 -14.32457 -14.09515 -13.87803 -13.51337 -13.34811 -13.24338 -13.06638 -12.90179 -12.66540 -12.57933 -12.39244 -12.00179 -11.78579 -11.53626 -11.32617 -11.29266 -10.96940 -10.82036 -10.57927 -10.45039 -9.74384 -8.68330 -8.07909 -6.38020 0.62130 0.79741 1.49447 1.56326 1.76197 2.53043 2.65750 3.01321 3.16157 3.82471 3.88454 3.96144 4.00568 4.14268 4.20713 4.24386 4.37366 4.39455 4.44451 4.61433 4.69929 4.77645 4.89213 4.92322 4.93489 4.95680 5.00766 5.05971 5.15022 5.16969 5.20438 5.24764 5.34619 5.39506 5.54310 5.61131 5.67987 5.96275 5.97962 6.13514 6.18150 6.56317 6.62572 6.95801 7.40916 8.72698 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.004340 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.315791 B = 6450.560042 C = 7002.469221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.058 0.942 4 C 0.007 3.993 5 C -0.601 4.601 6 H 0.043 0.957 7 C -0.036 4.036 8 N -0.939 5.939 9 Si 1.112 2.888 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.728 5.728 14 C 0.207 3.793 15 C -0.218 4.218 16 C -0.068 4.068 17 C -0.145 4.145 18 C -0.063 4.063 19 C -0.136 4.136 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.070 4.070 23 C -0.216 4.216 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.004 0.996 28 H -0.004 1.004 29 H 0.256 0.744 30 H 0.394 0.606 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 8.910 20.001 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.061 3.939 3 H 0.076 0.924 4 C -0.031 4.031 5 C -0.639 4.639 6 H 0.062 0.938 7 C -0.233 4.233 8 N -0.577 5.577 9 Si 0.934 3.066 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.353 5.353 14 C 0.102 3.898 15 C -0.240 4.240 16 C -0.086 4.086 17 C -0.147 4.147 18 C -0.081 4.081 19 C -0.173 4.173 20 C -0.172 4.172 21 C -0.174 4.174 22 C -0.088 4.088 23 C -0.239 4.239 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.022 0.978 28 H 0.014 0.986 29 H 0.066 0.934 30 H 0.228 0.772 31 H 0.131 0.869 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.155 0.845 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.408 8.610 18.919 20.925 hybrid contribution -1.376 -0.309 0.152 1.419 sum -3.784 8.301 19.072 21.141 Atomic orbital electron populations 1.22183 0.95295 1.01834 1.01939 1.20714 0.92891 0.95689 0.84634 0.92419 1.19403 0.95905 0.94557 0.93211 1.22286 0.93163 1.37652 1.10789 0.93836 1.27221 1.10895 0.92902 0.92332 1.70923 1.09726 1.41971 1.35037 0.82979 0.69807 0.77245 0.76544 1.19911 1.20812 1.19828 1.44791 1.71752 1.12095 1.06701 1.18189 0.93273 0.92044 0.86279 1.20762 1.10731 0.93219 0.99333 1.20843 0.96896 0.99537 0.91357 1.19641 1.05126 0.94154 0.95818 1.21425 0.97777 0.94798 0.94120 1.23046 0.96465 0.96497 1.01337 1.22815 0.95831 0.98646 0.99934 1.23009 0.97798 0.96343 1.00283 1.20971 0.97114 0.93950 0.96804 1.20729 1.09690 1.00585 0.92862 0.91629 0.93019 0.91916 0.97766 0.98560 0.93401 0.77217 0.86920 0.85115 0.88079 0.90341 0.90933 0.89111 0.91065 0.91224 0.91057 0.84486 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.44 71.98 0.68 -4.50 16 2 C 0.17 6.77 2.22 44.99 0.10 6.87 16 3 H 0.06 2.45 6.47 -2.39 -0.02 2.43 16 4 C 0.01 0.33 3.83 29.85 0.11 0.45 16 5 C -0.60 -33.83 8.84 25.60 0.23 -33.61 16 6 H 0.04 2.48 7.74 -2.91 -0.02 2.45 16 7 C -0.04 -2.07 5.46 84.66 0.46 -1.61 16 8 N -0.94 -57.81 13.65 21.45 0.29 -57.52 16 9 Si 1.11 51.11 29.90 68.60 2.05 53.16 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.73 -28.09 4.96 -318.94 -1.58 -29.67 16 14 C 0.21 7.29 6.64 38.21 0.25 7.54 16 15 C -0.22 -7.13 8.86 22.40 0.20 -6.94 16 16 C -0.07 -1.86 8.60 22.25 0.19 -1.67 16 17 C -0.15 -3.65 5.29 -19.84 -0.11 -3.76 16 18 C -0.06 -1.20 3.98 -11.02 -0.04 -1.24 16 19 C -0.14 -2.24 7.45 31.12 0.23 -2.01 16 20 C -0.13 -1.91 8.08 31.12 0.25 -1.66 16 21 C -0.14 -2.42 7.55 31.12 0.23 -2.18 16 22 C -0.07 -1.85 9.70 22.25 0.22 -1.63 16 23 C -0.22 -6.73 9.90 22.40 0.22 -6.51 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.92 7.75 -2.39 -0.02 1.90 16 27 H 0.00 0.22 8.00 -2.39 -0.02 0.20 16 28 H 0.00 -0.20 8.01 -2.39 -0.02 -0.22 16 29 H 0.26 15.87 7.22 -92.71 -0.67 15.20 16 30 H 0.39 15.51 8.61 -92.71 -0.80 14.71 16 31 H 0.11 3.74 6.15 -2.91 -0.02 3.72 16 32 H 0.13 3.02 6.65 -2.91 -0.02 3.00 16 33 H 0.10 1.68 8.09 -2.38 -0.02 1.67 16 34 H 0.08 1.37 6.30 -2.38 -0.02 1.36 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.42 7.72 -2.38 -0.02 1.40 16 40 H 0.14 2.87 8.05 -2.91 -0.02 2.85 16 41 H 0.12 3.50 8.06 -2.92 -0.02 3.47 16 Total: -1.00 -63.18 329.35 4.30 -58.88 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.30 Total: 27.61 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 3.23 Total: -52.46 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -1.29 Total: -87.19 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -63.18 4.30 -58.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.899 kcal (2) G-P(sol) polarization free energy of solvation -63.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds