Wall clock time and date at job start Mon Mar 30 2020 06:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99634 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46648 * 120.00199 * 9 7 5 12 12 H 1.48500 * 109.47111 * 240.00198 * 9 7 5 13 13 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 14 14 C 1.39673 * 119.99853 * 84.99980 * 13 2 1 15 15 C 1.38914 * 120.07462 * 359.72586 * 14 13 2 16 16 C 1.38108 * 119.92363 * 179.77048 * 15 14 13 17 17 C 1.38285 * 120.07470 * 0.50695 * 16 15 14 18 18 C 1.50700 * 119.92603 * 179.76832 * 17 16 15 19 19 C 1.53786 * 113.61267 * 37.47345 * 18 17 16 20 20 C 1.53780 * 87.07751 * 220.02129 * 19 18 17 21 21 C 1.53774 * 113.61284 * 299.97803 * 18 17 16 22 22 C 1.38288 * 120.14965 * 359.74796 * 17 16 15 23 23 C 1.38102 * 120.07407 * 359.97438 * 22 17 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 28 28 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 29 29 H 0.97001 * 119.99767 * 179.97438 * 8 7 5 30 30 H 0.96994 * 119.99975 * 265.00388 * 13 2 1 31 31 H 1.08002 * 120.03526 * 0.02562 * 15 14 13 32 32 H 1.08001 * 119.95880 * 180.25458 * 16 15 14 33 33 H 1.08999 * 112.85085 * 168.78057 * 18 17 16 34 34 H 1.08998 * 113.61515 * 334.57202 * 19 18 17 35 35 H 1.09000 * 113.61323 * 105.46971 * 19 18 17 36 36 H 1.09006 * 113.61341 * 270.88152 * 20 19 18 37 37 H 1.09004 * 113.61194 * 139.98618 * 20 19 18 38 38 H 1.09002 * 113.61918 * 254.52657 * 21 18 17 39 39 H 1.09005 * 113.62135 * 25.34696 * 21 18 17 40 40 H 1.08001 * 119.96545 * 179.97438 * 22 17 16 41 41 H 1.08006 * 120.03948 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 3.5764 -1.8385 3.2991 9 14 6.0922 -1.0622 2.4363 10 1 6.5838 -0.2917 1.2659 11 1 6.4871 -0.3667 3.6875 12 1 6.6856 -2.4233 2.4181 13 7 2.0184 -0.6906 -1.1961 14 6 2.1518 0.0061 -2.3993 15 6 1.8164 1.3526 -2.4649 16 6 1.9541 2.0397 -3.6550 17 6 2.4152 1.3862 -4.7831 18 6 2.5591 2.1380 -6.0812 19 6 3.0544 3.5832 -5.9045 20 6 2.0518 3.9775 -7.0019 21 6 1.2395 2.7365 -6.5960 22 6 2.7449 0.0446 -4.7226 23 6 2.6151 -0.6471 -3.5343 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7517 -1.7714 1.2056 29 1 4.0608 -2.2459 4.0341 30 1 2.2490 -1.6317 -1.1525 31 1 1.4524 1.8625 -1.5851 32 1 1.6974 3.0875 -3.7055 33 1 3.1080 1.5763 -6.8370 34 1 2.8222 4.0079 -4.9279 35 1 4.0958 3.7261 -6.1926 36 1 2.4628 3.9199 -8.0099 37 1 1.5382 4.9188 -6.8063 38 1 0.8157 2.1960 -7.4425 39 1 0.5105 2.9285 -5.8087 40 1 3.1044 -0.4629 -5.6056 41 1 2.8724 -1.6950 -3.4878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709995257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:17 Heat of formation + Delta-G solvation = 24.539143 kcal Electronic energy + Delta-G solvation = -18808.895557 eV Core-core repulsion = 16074.168077 eV Total energy + Delta-G solvation = -2734.727479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79029 -38.13748 -35.87286 -32.89590 -31.33952 -30.45047 -28.31943 -27.43203 -25.60761 -24.59137 -23.13715 -22.68069 -21.09988 -19.57574 -19.05981 -17.15036 -16.33206 -15.79606 -15.55173 -14.95598 -14.49384 -14.23869 -13.56263 -13.30606 -13.07516 -12.94701 -12.75530 -12.51004 -12.42763 -11.87813 -11.79220 -11.70438 -11.49870 -11.27382 -10.82036 -10.78145 -10.63678 -10.47238 -10.43757 -10.13820 -10.09254 -9.49532 -9.34494 -9.01212 -8.50457 -8.43902 -6.68924 -6.06423 -4.08458 1.86881 2.04307 3.27869 3.36089 3.41537 4.16838 4.24367 4.42272 4.64317 4.72269 4.72950 5.08402 5.26350 5.30517 5.33286 5.44204 5.61742 5.65999 5.74629 5.78146 5.80669 5.85445 5.92341 5.97075 6.00673 6.03986 6.22408 6.25736 6.40817 6.43948 6.47343 6.64281 6.78454 6.85487 6.87435 7.11662 7.32116 7.50835 7.56285 7.91324 8.11095 8.33242 8.47984 8.98386 9.56494 11.04580 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.004258 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.439771 B = 6573.521740 C = 7074.186242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.067 0.933 4 C 0.015 3.985 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.717 5.717 14 C 0.235 3.765 15 C -0.204 4.204 16 C -0.066 4.066 17 C -0.155 4.155 18 C -0.057 4.057 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.133 4.133 22 C -0.066 4.066 23 C -0.209 4.209 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.020 0.980 29 H 0.260 0.740 30 H 0.399 0.601 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 7.361 -17.029 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.042 3.958 3 H 0.085 0.915 4 C -0.022 4.022 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.341 5.341 14 C 0.127 3.873 15 C -0.227 4.227 16 C -0.084 4.084 17 C -0.157 4.157 18 C -0.076 4.076 19 C -0.174 4.174 20 C -0.183 4.183 21 C -0.171 4.171 22 C -0.085 4.085 23 C -0.232 4.232 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.234 0.766 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.524 7.361 -16.647 18.756 hybrid contribution 1.198 -0.441 0.287 1.308 sum -3.326 6.920 -16.360 18.072 Atomic orbital electron populations 1.22291 0.97774 1.01486 1.00720 1.21192 0.91182 0.97140 0.86305 0.91512 1.19391 0.96336 0.95727 0.90735 1.21226 0.91790 1.34266 1.08058 0.92397 1.25011 0.98392 0.95301 0.95695 1.69968 1.35455 1.35956 1.12129 0.86554 0.85858 0.77766 0.77981 1.19725 1.21021 1.21060 1.45004 1.70128 1.12414 1.06539 1.17981 0.91406 0.91480 0.86429 1.20659 1.09948 0.93448 0.98646 1.20603 0.97327 0.98559 0.91938 1.19231 1.07528 0.94214 0.94760 1.21273 0.97012 0.94451 0.94842 1.23055 0.98865 0.96241 0.99243 1.22843 0.98414 0.98167 0.98851 1.23003 0.96634 0.96713 1.00703 1.20618 0.97751 0.93576 0.96546 1.20528 1.09965 1.00065 0.92636 0.93004 0.93649 0.92348 0.95170 0.96140 0.93029 0.76601 0.86245 0.87035 0.89436 0.89791 0.91788 0.90536 0.91760 0.91903 0.90028 0.87140 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.42 37.16 0.35 -2.42 16 2 C 0.15 2.90 2.21 -67.93 -0.15 2.75 16 3 H 0.07 1.36 6.50 -51.93 -0.34 1.02 16 4 C 0.02 0.38 4.52 -27.89 -0.13 0.25 16 5 C -0.52 -14.03 8.84 -34.44 -0.30 -14.34 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.72 -13.42 4.96 -52.17 -0.26 -13.68 16 14 C 0.23 4.10 6.64 -83.79 -0.56 3.55 16 15 C -0.20 -3.37 8.84 -39.38 -0.35 -3.71 16 16 C -0.07 -0.95 8.60 -39.61 -0.34 -1.29 16 17 C -0.15 -2.13 5.29 -104.59 -0.55 -2.68 16 18 C -0.06 -0.64 3.98 -90.96 -0.36 -1.00 16 19 C -0.14 -1.39 7.45 -25.92 -0.19 -1.58 16 20 C -0.15 -1.27 8.08 -25.92 -0.21 -1.48 16 21 C -0.13 -1.31 7.55 -25.93 -0.20 -1.50 16 22 C -0.07 -0.94 9.70 -39.61 -0.38 -1.33 16 23 C -0.21 -3.33 9.90 -39.38 -0.39 -3.72 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.40 7.50 8.61 -40.82 -0.35 7.15 16 31 H 0.12 1.95 6.10 -52.49 -0.32 1.63 16 32 H 0.11 1.39 6.65 -52.49 -0.35 1.05 16 33 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 34 H 0.08 0.88 6.30 -51.93 -0.33 0.56 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.84 7.72 -51.93 -0.40 0.44 16 40 H 0.11 1.33 8.05 -52.49 -0.42 0.91 16 41 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -28.67 330.51 -10.10 -38.77 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.67 Total: 5.88 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -3.86 Total: -27.00 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.48 Total: -39.21 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.67 -10.10 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.307 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds