Wall clock time and date at job start Mon Mar 30 2020 07:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99549 * 2 1 4 4 C 1.50699 * 109.47348 * 89.99751 * 3 2 1 5 5 H 1.07995 * 119.99582 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99869 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99757 * 180.02562 * 6 4 3 8 8 Si 1.86793 * 119.99980 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47156 * 269.99474 * 8 6 4 10 10 H 1.48502 * 109.47323 * 29.99856 * 8 6 4 11 11 H 1.48502 * 109.47178 * 149.99802 * 8 6 4 12 12 C 1.38756 * 120.00134 * 179.97438 * 2 1 3 13 13 O 1.35632 * 120.00277 * 267.99118 * 12 2 1 14 14 C 1.34640 * 119.99739 * 87.99383 * 12 2 1 15 15 C 1.51420 * 123.63503 * 185.65527 * 14 12 2 16 16 S 1.82952 * 102.76315 * 179.89918 * 15 14 12 17 17 C 1.77293 * 97.09043 * 0.32256 * 16 15 14 18 18 C 1.32687 * 107.78051 * 359.79962 * 17 16 15 19 19 Cl 1.73596 * 120.17897 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.46963 * 85.68775 * 1 2 3 21 21 H 1.09008 * 109.46696 * 205.68022 * 1 2 3 22 22 H 1.08993 * 109.47598 * 325.68581 * 1 2 3 23 23 H 1.09000 * 109.46979 * 329.99860 * 3 2 1 24 24 H 1.09005 * 109.46853 * 210.00139 * 3 2 1 25 25 H 0.96995 * 119.99898 * 180.02562 * 7 6 4 26 26 H 0.96694 * 114.00315 * 180.02562 * 13 12 2 27 27 H 1.08994 * 110.75405 * 298.31365 * 15 14 12 28 28 H 1.09005 * 110.74845 * 61.68252 * 15 14 12 29 29 H 1.08004 * 126.11126 * 179.81617 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4208 5 1 2.0980 1.0959 2.2416 6 6 3.1267 2.8777 1.6726 7 7 3.3463 3.2572 2.9126 8 14 3.7335 3.9288 0.2528 9 1 5.1067 3.5071 -0.1237 10 1 2.8270 3.7596 -0.9112 11 1 3.7493 5.3556 0.6645 12 6 2.1588 -1.2016 0.0005 13 8 2.5336 -1.7679 1.1746 14 6 2.4601 -1.8055 -1.1645 15 6 3.1025 -3.1735 -1.2586 16 16 3.2470 -3.4288 -3.0645 17 6 2.5394 -1.8810 -3.5616 18 6 2.2104 -1.2143 -2.4626 19 17 1.4849 0.3584 -2.5803 20 1 -0.3633 0.0773 -1.0248 21 1 -0.3633 -0.9262 0.4454 22 1 -0.3634 0.8487 0.5793 23 1 1.6083 2.0284 -0.5139 24 1 3.1499 1.1385 -0.5139 25 1 3.8230 4.0831 3.0898 26 1 3.0117 -2.6023 1.0740 27 1 4.0853 -3.1718 -0.7875 28 1 2.4604 -3.9332 -0.8128 29 1 2.4006 -1.5416 -4.5775 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725689199.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:27 Heat of formation + Delta-G solvation = -7.811605 kcal Electronic energy + Delta-G solvation = -15820.620545 eV Core-core repulsion = 13089.999491 eV Total energy + Delta-G solvation = -2730.621054 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.033 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51098 -37.86885 -36.93148 -36.02701 -34.57085 -31.14842 -30.31951 -28.55486 -25.84124 -24.01002 -22.31209 -20.49444 -19.21963 -18.97761 -17.85543 -16.82787 -16.33978 -16.10548 -15.79288 -15.34257 -14.87268 -14.57924 -14.08175 -13.95701 -13.85585 -13.54710 -13.30944 -13.20324 -13.06845 -12.51492 -12.38969 -12.09195 -11.78751 -11.48927 -11.13303 -11.04898 -10.80199 -9.77206 -8.80909 -8.30244 -8.00067 -6.34209 0.02178 0.49776 1.01328 1.33698 1.34051 1.45031 1.63952 1.90907 2.18297 2.31834 3.03589 3.32992 3.85027 4.02974 4.32286 4.46184 4.49408 4.55829 4.75440 4.89208 4.96110 4.98300 5.06428 5.11734 5.52368 6.10134 6.53484 6.67955 6.73765 6.97214 7.31665 8.86861 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.007494 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.021327 B = 3735.255149 C = 4030.091129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.653 5.653 3 C 0.269 3.731 4 C -0.539 4.539 5 H 0.029 0.971 6 C 0.012 3.988 7 N -0.947 5.947 8 Si 0.938 3.062 9 H -0.267 1.267 10 H -0.245 1.245 11 H -0.280 1.280 12 C 0.427 3.573 13 O -0.496 6.496 14 C -0.291 4.291 15 C -0.030 4.030 16 S -0.135 6.135 17 C -0.161 4.161 18 C -0.014 4.014 19 Cl -0.065 7.065 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.047 0.953 23 H 0.031 0.969 24 H 0.013 0.987 25 H 0.266 0.734 26 H 0.415 0.585 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -12.652 -12.882 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.388 5.388 3 C 0.148 3.852 4 C -0.578 4.578 5 H 0.047 0.953 6 C -0.185 4.185 7 N -0.588 5.588 8 Si 0.761 3.239 9 H -0.192 1.192 10 H -0.168 1.168 11 H -0.205 1.205 12 C 0.284 3.716 13 O -0.299 6.299 14 C -0.296 4.296 15 C -0.178 4.178 16 S 0.103 5.897 17 C -0.292 4.292 18 C -0.052 4.052 19 Cl -0.036 7.036 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.271 0.729 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.946 -12.936 -13.168 18.562 hybrid contribution 0.048 1.597 0.694 1.742 sum -1.898 -11.339 -12.474 16.964 Atomic orbital electron populations 1.21390 0.78393 1.01339 1.00685 1.45813 1.04431 1.00876 1.87639 1.18980 0.91223 0.81806 0.93228 1.22001 1.35722 1.06532 0.93590 0.95254 1.25816 0.95740 0.98844 0.98136 1.70070 1.43100 1.24421 1.21218 0.85857 0.79881 0.78048 0.80140 1.19200 1.16837 1.20531 1.17659 0.86735 0.84192 0.83041 1.85007 1.71240 1.41439 1.32166 1.20001 1.18854 0.99834 0.90916 1.22771 1.04943 0.95039 0.95077 1.85795 1.77555 1.20931 1.05427 1.25232 1.05888 0.97270 1.00858 1.21206 1.02093 0.88577 0.93284 1.98369 1.81456 1.25723 1.98058 0.92677 0.92154 0.93450 0.95078 0.96943 0.92496 0.72879 0.86095 0.85296 0.79551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.27 10.15 127.77 1.30 5.56 15 2 N -0.65 -26.20 1.31 -844.26 -1.11 -27.31 15 3 C 0.27 12.73 2.56 85.63 0.22 12.95 15 4 C -0.54 -31.24 9.94 25.60 0.25 -30.98 15 5 H 0.03 1.93 8.06 -2.91 -0.02 1.91 15 6 C 0.01 0.72 5.47 84.65 0.46 1.18 15 7 N -0.95 -59.59 13.96 21.45 0.30 -59.29 15 8 Si 0.94 43.92 27.47 68.60 1.88 45.80 15 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 10 H -0.24 -10.63 6.54 99.48 0.65 -9.97 15 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 12 C 0.43 14.96 6.41 82.77 0.53 15.49 15 13 O -0.50 -16.60 13.65 -89.45 -1.22 -17.82 15 14 C -0.29 -8.46 6.02 -18.78 -0.11 -8.58 15 15 C -0.03 -0.61 6.00 71.47 0.43 -0.18 15 16 S -0.14 -3.03 23.21 -56.49 -1.31 -4.34 15 17 C -0.16 -4.05 11.12 66.65 0.74 -3.31 15 18 C -0.01 -0.41 6.32 22.78 0.14 -0.27 15 19 Cl -0.06 -2.09 21.96 -2.72 -0.06 -2.15 15 20 H 0.05 1.70 6.45 -2.39 -0.02 1.68 15 21 H 0.06 1.85 8.01 -2.38 -0.02 1.83 15 22 H 0.05 1.74 8.10 -2.39 -0.02 1.72 15 23 H 0.03 1.46 6.69 -2.39 -0.02 1.44 15 24 H 0.01 0.60 7.34 -2.38 -0.02 0.59 15 25 H 0.27 15.60 8.31 -92.71 -0.77 14.82 15 26 H 0.41 8.43 7.40 -74.06 -0.55 7.88 15 27 H 0.12 2.05 7.99 -2.39 -0.02 2.03 15 28 H 0.13 1.97 8.14 -2.38 -0.02 1.95 15 29 H 0.19 3.92 8.06 -2.91 -0.02 3.89 15 Total: -1.00 -69.98 270.88 3.02 -66.96 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.57 Total: 6.29 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 3.97 Total: -8.14 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -0.81 Total: -86.60 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.22 Total: -17.82 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -1.31 Total: -4.34 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.06 Total: -2.15 kcal Total: -69.98 3.02 -66.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689199.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.149 kcal (2) G-P(sol) polarization free energy of solvation -69.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds