Wall clock time and date at job start Mon Mar 30 2020 07:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48494 * 109.47325 * 269.99947 * 3 2 1 5 5 H 1.48491 * 109.47077 * 30.00312 * 3 2 1 6 6 H 1.48503 * 109.47013 * 150.00253 * 3 2 1 7 7 C 1.37882 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99448 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00445 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.27162 * 299.36361 * 9 7 2 11 11 C 1.54941 * 110.39484 * 177.21551 * 9 7 2 12 12 C 1.55309 * 100.94155 * 204.59426 * 11 9 7 13 13 C 1.54388 * 102.25040 * 34.13292 * 12 11 9 14 14 H 1.09000 * 109.90600 * 98.19821 * 13 12 11 15 15 C 1.50704 * 109.82560 * 219.12919 * 13 12 11 16 16 C 1.31705 * 126.88333 * 119.59518 * 15 13 12 17 17 Cl 1.73599 * 119.39835 * 359.97438 * 16 15 13 18 18 N 1.37691 * 121.19712 * 180.27574 * 16 15 13 19 19 C 1.47309 * 114.53814 * 359.53441 * 18 16 15 20 20 S 1.77686 * 126.89119 * 299.61081 * 15 13 12 21 21 O 1.43240 * 107.59015 * 338.64237 * 13 12 11 22 22 H 0.96996 * 120.00452 * 359.97438 * 1 2 3 23 23 H 1.09000 * 111.12312 * 322.51022 * 11 9 7 24 24 H 1.09000 * 111.12269 * 86.63431 * 11 9 7 25 25 H 1.09001 * 110.84792 * 275.94504 * 12 11 9 26 26 H 1.08996 * 110.84688 * 152.31719 * 12 11 9 27 27 H 0.97007 * 122.72666 * 179.74269 * 18 16 15 28 28 H 1.08999 * 111.04386 * 242.13268 * 19 18 16 29 29 H 1.09001 * 110.86266 * 118.55248 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6277 -2.5762 0.8891 11 6 2.2374 -3.6921 -0.0727 12 6 1.3308 -4.7874 -0.6976 13 6 0.4282 -3.9656 -1.6428 14 1 0.8131 -4.0172 -2.6613 15 6 -0.9793 -4.5024 -1.6005 16 6 -2.0635 -3.8500 -1.2352 17 17 -1.9332 -2.1923 -0.7367 18 7 -3.2976 -4.4608 -1.2357 19 6 -3.2851 -5.8649 -1.6810 20 16 -1.5088 -6.1426 -2.0328 21 8 0.4446 -2.6082 -1.1854 22 1 -0.4850 0.8400 0.0004 23 1 3.0829 -3.4645 -0.7218 24 1 2.5757 -3.9817 0.9222 25 1 0.7377 -5.2845 0.0700 26 1 1.9247 -5.5089 -1.2585 27 1 -4.1096 -4.0027 -0.9677 28 1 -3.8843 -5.9951 -2.5822 29 1 -3.6318 -6.5269 -0.8875 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725689222.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:39 Heat of formation + Delta-G solvation = -10.619393 kcal Electronic energy + Delta-G solvation = -15978.552615 eV Core-core repulsion = 13247.809806 eV Total energy + Delta-G solvation = -2730.742809 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.033 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.45480 -37.28806 -35.23299 -32.71723 -30.94615 -30.72603 -27.74436 -26.24018 -24.33313 -21.27539 -20.34194 -19.09827 -17.93344 -16.47679 -16.09488 -15.20345 -14.93601 -14.71459 -14.22534 -13.74250 -13.38323 -12.60517 -12.43942 -12.06243 -11.82007 -11.64345 -10.90588 -10.72797 -10.62656 -10.46252 -10.40711 -10.16665 -9.91261 -9.61647 -9.46809 -8.97293 -8.85711 -8.47628 -7.75962 -6.59512 -5.96262 -4.07189 1.65872 2.21645 2.46074 3.05300 3.33853 3.40416 3.42917 3.81465 4.46308 5.04434 5.12873 5.15634 5.45730 5.59071 5.66476 5.83513 6.12085 6.32021 6.43413 6.63162 6.73996 6.82568 6.92051 7.14134 7.52163 7.67799 7.94043 8.33999 8.68796 9.09038 9.62663 11.09784 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.032877 B = 0.007678 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.465334 B = 3645.981173 C = 4344.980357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.082 3.918 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.211 3.789 10 H 0.027 0.973 11 C -0.148 4.148 12 C -0.143 4.143 13 C 0.163 3.837 14 H 0.069 0.931 15 C -0.207 4.207 16 C 0.159 3.841 17 Cl 0.055 6.945 18 N -0.745 5.745 19 C 0.157 3.843 20 S -0.167 6.167 21 O -0.331 6.331 22 H 0.256 0.744 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.414 0.586 28 H 0.087 0.913 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 -9.763 -2.089 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.123 4.123 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.156 3.844 10 H 0.045 0.955 11 C -0.186 4.186 12 C -0.181 4.181 13 C 0.101 3.899 14 H 0.086 0.914 15 C -0.330 4.330 16 C 0.024 3.976 17 Cl 0.084 6.916 18 N -0.383 5.383 19 C -0.079 4.079 20 S 0.065 5.935 21 O -0.250 6.250 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.252 0.748 28 H 0.105 0.895 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.079 -10.455 -2.565 12.363 hybrid contribution -0.604 1.904 0.565 2.076 sum -6.683 -8.551 -2.000 11.035 Atomic orbital electron populations 1.69929 1.05926 1.25966 1.47821 1.24968 0.94684 0.98898 0.93746 0.86671 0.79947 0.83625 0.78098 1.20640 1.21369 1.19948 1.21106 0.92614 0.90137 1.52794 0.92082 1.20496 0.86607 0.91997 0.85293 0.95499 1.23347 0.99254 0.96295 0.99701 1.23081 0.97843 0.98201 0.98984 1.20535 0.85514 0.86328 0.97497 0.91386 1.23271 0.98541 0.93466 1.17696 1.20834 0.86082 0.90706 1.00027 1.98648 1.96371 1.08324 1.88259 1.44725 1.07039 1.10973 1.75574 1.23875 0.96793 0.85155 1.02102 1.86017 1.03851 1.17271 1.86405 1.89062 1.71240 1.18925 1.45763 0.93385 0.91623 0.92099 0.91470 0.91927 0.74783 0.89456 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.05 11.45 55.43 0.63 -23.42 15 2 C 0.08 2.26 5.42 -17.82 -0.10 2.17 15 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.53 -14.52 8.81 -34.44 -0.30 -14.82 15 8 H 0.06 1.64 7.77 -52.49 -0.41 1.24 15 9 C 0.21 5.34 3.19 -26.86 -0.09 5.25 15 10 H 0.03 0.75 8.14 -51.93 -0.42 0.32 15 11 C -0.15 -3.10 6.53 -24.48 -0.16 -3.26 15 12 C -0.14 -2.70 6.53 -24.78 -0.16 -2.87 15 13 C 0.16 3.42 4.09 -27.15 -0.11 3.31 15 14 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 15 C -0.21 -4.01 5.77 -36.18 -0.21 -4.22 15 16 C 0.16 2.99 7.16 -16.80 -0.12 2.87 15 17 Cl 0.06 1.20 24.22 -51.86 -1.26 -0.06 15 18 N -0.74 -10.83 6.17 -60.67 -0.37 -11.21 15 19 C 0.16 1.92 8.62 60.29 0.52 2.44 15 20 S -0.17 -2.63 23.31 -107.50 -2.51 -5.14 15 21 O -0.33 -8.25 6.72 -35.23 -0.24 -8.49 15 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 23 H 0.07 1.36 8.05 -51.93 -0.42 0.94 15 24 H 0.06 1.18 8.14 -51.93 -0.42 0.75 15 25 H 0.07 1.26 7.84 -51.93 -0.41 0.85 15 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.41 5.05 8.96 -40.82 -0.37 4.68 15 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 LS Contribution 268.64 15.07 4.05 4.05 Total: -1.00 -29.38 268.64 -8.71 -38.09 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -3.27 Total: -0.86 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.73 Total: -9.12 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.26 Total: -34.63 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.24 Total: -8.49 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.51 Total: -5.14 kcal Atomic # 17 Polarization: 1.20 SS G_CDS: -1.26 Total: -0.06 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.38 -8.71 -38.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689222.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.470 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds