Wall clock time and date at job start Mon Mar 30 2020 07:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48494 * 109.47325 * 269.99947 * 3 2 1 5 5 H 1.48491 * 109.47077 * 30.00312 * 3 2 1 6 6 H 1.48503 * 109.47013 * 150.00253 * 3 2 1 7 7 C 1.37882 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99448 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00445 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.27162 * 299.36361 * 9 7 2 11 11 C 1.54941 * 110.39484 * 177.21551 * 9 7 2 12 12 C 1.55309 * 100.94155 * 204.59426 * 11 9 7 13 13 C 1.54388 * 102.25040 * 34.13292 * 12 11 9 14 14 H 1.09000 * 109.90600 * 98.19821 * 13 12 11 15 15 C 1.50704 * 109.82560 * 219.12919 * 13 12 11 16 16 C 1.31705 * 126.88333 * 119.59518 * 15 13 12 17 17 Cl 1.73599 * 119.39835 * 359.97438 * 16 15 13 18 18 N 1.37691 * 121.19712 * 180.27574 * 16 15 13 19 19 C 1.47309 * 114.53814 * 359.53441 * 18 16 15 20 20 S 1.77686 * 126.89119 * 299.61081 * 15 13 12 21 21 O 1.43240 * 107.59015 * 338.64237 * 13 12 11 22 22 H 0.96996 * 120.00452 * 359.97438 * 1 2 3 23 23 H 1.09000 * 111.12312 * 322.51022 * 11 9 7 24 24 H 1.09000 * 111.12269 * 86.63431 * 11 9 7 25 25 H 1.09001 * 110.84792 * 275.94504 * 12 11 9 26 26 H 1.08996 * 110.84688 * 152.31719 * 12 11 9 27 27 H 0.97007 * 122.72666 * 179.74269 * 18 16 15 28 28 H 1.08999 * 111.04386 * 242.13268 * 19 18 16 29 29 H 1.09001 * 110.86266 * 118.55248 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6277 -2.5762 0.8891 11 6 2.2374 -3.6921 -0.0727 12 6 1.3308 -4.7874 -0.6976 13 6 0.4282 -3.9656 -1.6428 14 1 0.8131 -4.0172 -2.6613 15 6 -0.9793 -4.5024 -1.6005 16 6 -2.0635 -3.8500 -1.2352 17 17 -1.9332 -2.1923 -0.7367 18 7 -3.2976 -4.4608 -1.2357 19 6 -3.2851 -5.8649 -1.6810 20 16 -1.5088 -6.1426 -2.0328 21 8 0.4446 -2.6082 -1.1854 22 1 -0.4850 0.8400 0.0004 23 1 3.0829 -3.4645 -0.7218 24 1 2.5757 -3.9817 0.9222 25 1 0.7377 -5.2845 0.0700 26 1 1.9247 -5.5089 -1.2585 27 1 -4.1096 -4.0027 -0.9677 28 1 -3.8843 -5.9951 -2.5822 29 1 -3.6318 -6.5269 -0.8875 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725689222.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:39 Heat of formation + Delta-G solvation = -29.268771 kcal Electronic energy + Delta-G solvation = -15979.361313 eV Core-core repulsion = 13247.809806 eV Total energy + Delta-G solvation = -2731.551506 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.033 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.07820 -38.72227 -36.73194 -34.70117 -32.59995 -32.36474 -29.41188 -27.47642 -26.12717 -22.94975 -22.06356 -20.54192 -19.30939 -18.46107 -17.37884 -16.79946 -16.61545 -16.13528 -15.86949 -15.25539 -14.78457 -14.34050 -14.13954 -13.53132 -13.43412 -13.30974 -12.78802 -12.37087 -12.31640 -12.27426 -12.05075 -11.73407 -11.51200 -11.18898 -11.04563 -10.82513 -10.53011 -10.15397 -9.61216 -8.01808 -7.85933 -6.20205 0.43075 0.97699 1.00435 1.44390 1.46094 1.54629 1.72421 2.47410 2.51432 3.19441 3.76898 3.99257 4.13132 4.18416 4.25843 4.28314 4.58801 4.68574 4.82502 5.02706 5.03460 5.20843 5.30610 5.67439 5.79287 5.87516 6.31934 6.40594 6.71000 7.15905 7.52977 9.02082 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.032877 B = 0.007678 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.465334 B = 3645.981173 C = 4344.980357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.035 3.965 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.059 0.941 9 C 0.210 3.790 10 H -0.006 1.006 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.066 0.934 15 C -0.236 4.236 16 C 0.160 3.840 17 Cl 0.019 6.981 18 N -0.737 5.737 19 C 0.161 3.839 20 S -0.162 6.162 21 O -0.353 6.353 22 H 0.254 0.746 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.425 0.575 28 H 0.119 0.881 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.867 -11.187 -2.490 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.168 4.168 3 Si 0.777 3.223 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.077 0.923 9 C 0.154 3.846 10 H 0.011 0.989 11 C -0.180 4.180 12 C -0.164 4.164 13 C 0.091 3.909 14 H 0.084 0.916 15 C -0.359 4.359 16 C 0.022 3.978 17 Cl 0.048 6.952 18 N -0.376 5.376 19 C -0.073 4.073 20 S 0.070 5.930 21 O -0.273 6.273 22 H 0.063 0.937 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.266 0.734 28 H 0.137 0.863 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.570 -11.902 -2.965 13.914 hybrid contribution -0.554 2.247 0.653 2.405 sum -7.124 -9.654 -2.311 12.219 Atomic orbital electron populations 1.70085 1.06915 1.26333 1.48116 1.25699 0.95578 1.01936 0.93586 0.85700 0.78945 0.79825 0.77864 1.20710 1.21062 1.19228 1.21443 0.92809 0.91626 1.53249 0.92282 1.20280 0.86885 0.92970 0.84423 0.98881 1.23244 0.98621 0.95314 1.00780 1.22979 0.97163 0.97688 0.98614 1.20670 0.87461 0.85154 0.97637 0.91596 1.23114 0.97847 0.96089 1.18865 1.20911 0.87692 0.89288 0.99867 1.98638 1.96663 1.11264 1.88672 1.44704 1.05962 1.11890 1.74999 1.24274 0.94579 0.83886 1.04588 1.85876 1.06599 1.14185 1.86377 1.88989 1.71364 1.21601 1.45298 0.93672 0.91505 0.90754 0.91346 0.89198 0.73423 0.86304 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.21 11.45 21.45 0.25 -49.96 15 2 C 0.04 1.96 5.42 84.66 0.46 2.42 15 3 Si 0.95 43.99 29.54 68.60 2.03 46.01 15 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 15 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 15 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 7 C -0.55 -30.93 8.81 25.60 0.23 -30.71 15 8 H 0.06 3.22 7.77 -2.91 -0.02 3.20 15 9 C 0.21 10.83 3.19 30.51 0.10 10.93 15 10 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 11 C -0.14 -5.87 6.53 32.05 0.21 -5.66 15 12 C -0.13 -4.63 6.53 31.86 0.21 -4.42 15 13 C 0.15 6.34 4.09 30.32 0.12 6.47 15 14 H 0.07 2.72 8.14 -2.39 -0.02 2.70 15 15 C -0.24 -8.91 5.77 25.00 0.14 -8.77 15 16 C 0.16 5.89 7.16 83.08 0.59 6.48 15 17 Cl 0.02 0.84 24.22 -2.72 -0.07 0.78 15 18 N -0.74 -19.72 6.17 -345.85 -2.14 -21.85 15 19 C 0.16 3.33 8.62 127.61 1.10 4.43 15 20 S -0.16 -4.67 23.31 -56.49 -1.32 -5.99 15 21 O -0.35 -17.96 6.72 -148.98 -1.00 -18.96 15 22 H 0.25 14.02 8.31 -92.71 -0.77 13.25 15 23 H 0.07 2.72 8.05 -2.39 -0.02 2.70 15 24 H 0.07 2.82 8.14 -2.39 -0.02 2.80 15 25 H 0.07 2.48 7.84 -2.39 -0.02 2.46 15 26 H 0.09 2.78 8.14 -2.39 -0.02 2.76 15 27 H 0.43 9.43 8.96 -92.70 -0.83 8.60 15 28 H 0.12 1.83 8.14 -2.39 -0.02 1.81 15 29 H 0.12 1.84 8.14 -2.39 -0.02 1.82 15 Total: -1.00 -64.08 268.64 1.26 -62.82 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.34 Total: 5.98 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 3.16 Total: -18.83 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -1.89 Total: -71.82 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.00 Total: -18.96 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -1.32 Total: -5.99 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -0.07 Total: 0.78 kcal Total: -64.08 1.26 -62.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689222.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.553 kcal (2) G-P(sol) polarization free energy of solvation -64.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds