Wall clock time and date at job start Mon Mar 30 2020 07:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00255 * 2 1 4 4 H 1.48499 * 109.46983 * 269.99491 * 3 2 1 5 5 H 1.48500 * 109.47020 * 29.99657 * 3 2 1 6 6 H 1.48502 * 109.47139 * 149.99264 * 3 2 1 7 7 C 1.37876 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99978 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00045 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.27583 * 57.91165 * 9 7 2 11 11 C 1.54950 * 110.30898 * 180.02562 * 9 7 2 12 12 C 1.55305 * 100.94366 * 155.46031 * 11 9 7 13 13 C 1.54382 * 102.25105 * 325.86599 * 12 11 9 14 14 H 1.09009 * 109.83092 * 261.75433 * 13 12 11 15 15 C 1.50698 * 109.83305 * 140.86973 * 13 12 11 16 16 C 1.31707 * 126.88723 * 115.27130 * 15 13 12 17 17 Cl 1.73598 * 119.39574 * 359.97438 * 16 15 13 18 18 N 1.37687 * 121.20428 * 180.23342 * 16 15 13 19 19 C 1.47323 * 114.53293 * 359.48060 * 18 16 15 20 20 S 1.77687 * 126.88948 * 294.97741 * 15 13 12 21 21 O 1.43247 * 107.58913 * 21.35694 * 13 12 11 22 22 H 0.96996 * 119.99601 * 0.02562 * 1 2 3 23 23 H 1.09003 * 111.12619 * 37.53766 * 11 9 7 24 24 H 1.09003 * 111.12602 * 273.37798 * 11 9 7 25 25 H 1.09000 * 110.84582 * 207.67711 * 12 11 9 26 26 H 1.08993 * 110.84770 * 84.05273 * 12 11 9 27 27 H 0.97001 * 122.73595 * 179.75987 * 18 16 15 28 28 H 1.08995 * 110.85867 * 118.41866 * 19 18 16 29 29 H 1.09000 * 110.86454 * 241.87801 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8889 -0.6507 0.8674 11 6 4.0493 -2.6473 0.0010 12 6 5.4527 -2.4422 -0.6317 13 6 5.1961 -1.2961 -1.6337 14 1 5.0508 -1.7048 -2.6337 15 6 6.3660 -0.3463 -1.6347 16 6 7.1881 -0.1058 -2.6352 17 17 6.9607 -0.9352 -4.1432 18 7 8.2278 0.7876 -2.5052 19 6 8.3173 1.4340 -1.1844 20 16 6.9088 0.6790 -0.2888 21 8 4.0125 -0.6086 -1.2111 22 1 -0.4849 0.8400 -0.0004 23 1 3.4297 -3.2954 -0.6189 24 1 4.1291 -3.0367 1.0160 25 1 5.7804 -3.3438 -1.1492 26 1 6.1786 -2.1417 0.1237 27 1 8.8481 0.9790 -3.2259 28 1 9.2618 1.1920 -0.6971 29 1 8.1926 2.5133 -1.2712 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725689224.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:44 Heat of formation + Delta-G solvation = -17.207482 kcal Electronic energy + Delta-G solvation = -15739.991828 eV Core-core repulsion = 13008.963338 eV Total energy + Delta-G solvation = -2731.028490 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.033 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.82328 -37.87583 -36.27100 -32.76506 -31.58848 -30.98092 -28.29647 -26.57902 -24.32282 -21.42737 -20.42539 -19.89427 -18.14733 -16.86353 -16.47429 -15.57410 -15.28521 -14.99781 -14.22861 -13.97408 -13.79318 -12.91501 -12.64142 -12.51570 -12.41850 -11.86313 -11.35318 -11.09992 -10.87052 -10.65009 -10.50535 -10.45191 -10.32558 -9.85123 -9.59894 -9.47812 -9.11057 -8.56152 -8.26301 -6.88939 -6.05398 -4.14256 1.27721 1.72216 1.91824 2.65405 3.28118 3.49265 3.56929 3.69314 4.57074 4.84460 4.88473 5.00616 5.04592 5.34923 5.48633 5.58691 5.76758 6.05892 6.18679 6.27048 6.44766 6.61429 6.65686 6.72122 7.17265 7.27637 7.67737 8.31792 8.48623 8.95485 9.58456 11.04705 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.007954 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.092537 B = 3519.225679 C = 3860.160394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.084 3.916 3 Si 0.893 3.107 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.257 1.257 7 C -0.518 4.518 8 H 0.080 0.920 9 C 0.168 3.832 10 H 0.033 0.967 11 C -0.135 4.135 12 C -0.148 4.148 13 C 0.161 3.839 14 H 0.087 0.913 15 C -0.175 4.175 16 C 0.165 3.835 17 Cl -0.042 7.042 18 N -0.740 5.740 19 C 0.145 3.855 20 S -0.115 6.115 21 O -0.371 6.371 22 H 0.265 0.735 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.415 0.585 28 H 0.093 0.907 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.880 0.273 -4.532 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.120 4.120 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.182 1.182 7 C -0.555 4.555 8 H 0.098 0.902 9 C 0.113 3.887 10 H 0.050 0.950 11 C -0.173 4.173 12 C -0.186 4.186 13 C 0.101 3.899 14 H 0.105 0.895 15 C -0.299 4.299 16 C 0.028 3.972 17 Cl -0.014 7.014 18 N -0.379 5.379 19 C -0.090 4.090 20 S 0.120 5.880 21 O -0.291 6.291 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.254 0.746 28 H 0.111 0.889 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.222 0.719 -3.464 18.562 hybrid contribution 1.234 0.693 -1.707 2.217 sum 19.456 1.413 -5.171 20.181 Atomic orbital electron populations 1.69930 1.06599 1.27392 1.49159 1.25051 0.94673 0.99805 0.92467 0.86509 0.80084 0.82195 0.79102 1.19971 1.22637 1.18176 1.21041 0.87750 0.94812 1.51866 0.90242 1.21147 0.95056 0.88483 0.83985 0.94950 1.23166 0.93725 0.99985 1.00410 1.23151 0.99107 0.97693 0.98610 1.20763 0.82349 0.87923 0.98909 0.89505 1.23587 1.03982 1.08433 0.93880 1.19974 0.93718 0.95175 0.88351 1.98392 1.95881 1.76030 1.31078 1.44465 1.32361 1.46087 1.14965 1.24050 1.00577 0.99892 0.84508 1.86753 1.32221 1.50715 1.18348 1.88713 1.37673 1.57872 1.44807 0.92535 0.90841 0.91304 0.91032 0.90969 0.74588 0.88920 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.93 13.96 55.43 0.77 -27.16 15 2 C 0.08 2.54 5.47 -17.82 -0.10 2.44 15 3 Si 0.89 23.83 26.46 -169.99 -4.50 19.33 15 4 H -0.27 -7.46 7.11 56.52 0.40 -7.06 15 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 15 6 H -0.26 -6.71 6.49 56.52 0.37 -6.34 15 7 C -0.52 -15.05 9.38 -34.44 -0.32 -15.38 15 8 H 0.08 2.43 8.00 -52.49 -0.42 2.01 15 9 C 0.17 4.17 2.66 -26.85 -0.07 4.10 15 10 H 0.03 0.84 7.09 -51.93 -0.37 0.47 15 11 C -0.14 -2.71 6.53 -24.48 -0.16 -2.87 15 12 C -0.15 -2.55 6.53 -24.79 -0.16 -2.71 15 13 C 0.16 3.14 3.87 -27.16 -0.11 3.03 15 14 H 0.09 1.61 6.84 -51.92 -0.36 1.26 15 15 C -0.18 -3.08 5.45 -36.19 -0.20 -3.28 15 16 C 0.16 2.43 7.16 -16.80 -0.12 2.31 15 17 Cl -0.04 -0.56 27.69 -51.86 -1.44 -1.99 15 18 N -0.74 -8.53 6.18 -60.66 -0.37 -8.91 15 19 C 0.15 1.60 8.62 60.30 0.52 2.12 15 20 S -0.11 -1.90 23.15 -107.50 -2.49 -4.39 15 21 O -0.37 -9.11 8.83 -35.23 -0.31 -9.42 15 22 H 0.27 7.78 8.31 -40.82 -0.34 7.44 15 23 H 0.07 1.48 8.04 -51.93 -0.42 1.06 15 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 26 H 0.07 1.21 7.69 -51.93 -0.40 0.81 15 27 H 0.42 3.59 8.96 -40.82 -0.37 3.22 15 28 H 0.09 0.79 8.14 -51.93 -0.42 0.36 15 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 270.15 15.07 4.07 4.07 Total: -1.00 -32.75 270.15 -8.17 -40.92 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -3.19 Total: -2.22 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.72 Total: -10.23 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.40 Total: -36.07 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.31 Total: -9.42 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -4.50 Total: 19.33 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.49 Total: -4.39 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.44 Total: -1.99 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.75 -8.17 -40.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689224.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.713 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds