Wall clock time and date at job start Mon Mar 30 2020 07:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00255 * 2 1 4 4 H 1.48499 * 109.46983 * 269.99491 * 3 2 1 5 5 H 1.48500 * 109.47020 * 29.99657 * 3 2 1 6 6 H 1.48502 * 109.47139 * 149.99264 * 3 2 1 7 7 C 1.37876 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99978 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00045 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.27583 * 57.91165 * 9 7 2 11 11 C 1.54950 * 110.30898 * 180.02562 * 9 7 2 12 12 C 1.55305 * 100.94366 * 155.46031 * 11 9 7 13 13 C 1.54382 * 102.25105 * 325.86599 * 12 11 9 14 14 H 1.09009 * 109.83092 * 261.75433 * 13 12 11 15 15 C 1.50698 * 109.83305 * 140.86973 * 13 12 11 16 16 C 1.31707 * 126.88723 * 115.27130 * 15 13 12 17 17 Cl 1.73598 * 119.39574 * 359.97438 * 16 15 13 18 18 N 1.37687 * 121.20428 * 180.23342 * 16 15 13 19 19 C 1.47323 * 114.53293 * 359.48060 * 18 16 15 20 20 S 1.77687 * 126.88948 * 294.97741 * 15 13 12 21 21 O 1.43247 * 107.58913 * 21.35694 * 13 12 11 22 22 H 0.96996 * 119.99601 * 0.02562 * 1 2 3 23 23 H 1.09003 * 111.12619 * 37.53766 * 11 9 7 24 24 H 1.09003 * 111.12602 * 273.37798 * 11 9 7 25 25 H 1.09000 * 110.84582 * 207.67711 * 12 11 9 26 26 H 1.08993 * 110.84770 * 84.05273 * 12 11 9 27 27 H 0.97001 * 122.73595 * 179.75987 * 18 16 15 28 28 H 1.08995 * 110.85867 * 118.41866 * 19 18 16 29 29 H 1.09000 * 110.86454 * 241.87801 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8889 -0.6507 0.8674 11 6 4.0493 -2.6473 0.0010 12 6 5.4527 -2.4422 -0.6317 13 6 5.1961 -1.2961 -1.6337 14 1 5.0508 -1.7048 -2.6337 15 6 6.3660 -0.3463 -1.6347 16 6 7.1881 -0.1058 -2.6352 17 17 6.9607 -0.9352 -4.1432 18 7 8.2278 0.7876 -2.5052 19 6 8.3173 1.4340 -1.1844 20 16 6.9088 0.6790 -0.2888 21 8 4.0125 -0.6086 -1.2111 22 1 -0.4849 0.8400 -0.0004 23 1 3.4297 -3.2954 -0.6189 24 1 4.1291 -3.0367 1.0160 25 1 5.7804 -3.3438 -1.1492 26 1 6.1786 -2.1417 0.1237 27 1 8.8481 0.9790 -3.2259 28 1 9.2618 1.1920 -0.6971 29 1 8.1926 2.5133 -1.2712 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725689224.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:44 Heat of formation + Delta-G solvation = -40.590001 kcal Electronic energy + Delta-G solvation = -15741.005770 eV Core-core repulsion = 13008.963338 eV Total energy + Delta-G solvation = -2732.042432 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.033 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.32570 -39.14353 -37.35031 -34.87517 -33.12450 -32.59892 -29.94583 -27.67499 -26.08321 -22.94365 -22.12956 -21.19521 -19.37703 -18.93286 -17.74796 -17.06664 -16.87228 -16.22529 -15.75989 -15.58096 -15.00762 -14.70798 -14.28229 -14.10939 -13.84617 -13.37766 -12.88539 -12.53502 -12.44988 -12.41337 -12.31359 -11.75849 -11.56622 -11.53460 -11.40777 -11.31632 -10.85443 -10.39327 -10.06270 -8.36192 -8.02071 -6.47440 0.14526 0.70357 0.74933 1.34340 1.42038 1.50911 1.55844 2.29696 2.37543 2.89317 3.59144 3.76620 3.85708 4.13941 4.19123 4.24131 4.39089 4.53744 4.59842 4.78593 4.95003 5.12354 5.14825 5.46806 5.51688 5.55758 6.20769 6.34915 6.47623 6.72628 7.28998 8.78013 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.007954 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.092537 B = 3519.225679 C = 3860.160394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.034 3.966 3 Si 0.952 3.048 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.250 1.250 7 C -0.525 4.525 8 H 0.049 0.951 9 C 0.170 3.830 10 H 0.022 0.978 11 C -0.132 4.132 12 C -0.131 4.131 13 C 0.154 3.846 14 H 0.091 0.909 15 C -0.217 4.217 16 C 0.190 3.810 17 Cl -0.029 7.029 18 N -0.726 5.726 19 C 0.164 3.836 20 S -0.185 6.185 21 O -0.399 6.399 22 H 0.268 0.732 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.433 0.567 28 H 0.129 0.871 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.173 0.868 -5.375 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.166 4.166 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.174 1.174 7 C -0.563 4.563 8 H 0.067 0.933 9 C 0.115 3.885 10 H 0.039 0.961 11 C -0.170 4.170 12 C -0.169 4.169 13 C 0.094 3.906 14 H 0.109 0.891 15 C -0.341 4.341 16 C 0.051 3.949 17 Cl -0.001 7.001 18 N -0.365 5.365 19 C -0.070 4.070 20 S 0.048 5.952 21 O -0.320 6.320 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.275 0.725 28 H 0.146 0.854 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 21.561 1.319 -4.326 22.030 hybrid contribution 0.324 0.472 -1.570 1.671 sum 21.885 1.791 -5.896 22.736 Atomic orbital electron populations 1.70033 1.07970 1.28297 1.51313 1.25795 0.95303 1.02964 0.92578 0.85585 0.79231 0.78778 0.78543 1.20834 1.21637 1.17431 1.21368 0.90481 0.93531 1.50872 0.93274 1.20893 0.92321 0.91366 0.83943 0.96056 1.23091 0.95318 0.96886 1.01685 1.23088 0.97182 0.98296 0.98320 1.20898 0.81450 0.88876 0.99327 0.89134 1.23089 1.05186 1.10624 0.95211 1.20083 0.92983 0.93895 0.87940 1.98407 1.95860 1.75814 1.29986 1.44542 1.31422 1.44690 1.15850 1.24297 0.99170 1.00356 0.83217 1.86833 1.35794 1.52029 1.20570 1.88572 1.40389 1.58827 1.44192 0.92268 0.91432 0.89762 0.87882 0.90251 0.72522 0.85368 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.29 13.96 21.45 0.30 -59.99 15 2 C 0.03 2.07 5.47 84.65 0.46 2.53 15 3 Si 0.95 50.29 26.46 68.60 1.82 52.10 15 4 H -0.28 -15.13 7.11 99.48 0.71 -14.43 15 5 H -0.29 -14.62 7.11 99.48 0.71 -13.91 15 6 H -0.25 -12.82 6.49 99.48 0.65 -12.17 15 7 C -0.53 -31.47 9.38 25.60 0.24 -31.23 15 8 H 0.05 3.15 8.00 -2.91 -0.02 3.13 15 9 C 0.17 8.51 2.66 30.51 0.08 8.59 15 10 H 0.02 1.13 7.09 -2.39 -0.02 1.11 15 11 C -0.13 -5.22 6.53 32.05 0.21 -5.01 15 12 C -0.13 -4.28 6.53 31.85 0.21 -4.07 15 13 C 0.15 5.80 3.87 30.32 0.12 5.92 15 14 H 0.09 3.23 6.84 -2.38 -0.02 3.22 15 15 C -0.22 -7.20 5.45 24.99 0.14 -7.06 15 16 C 0.19 5.04 7.16 83.08 0.59 5.63 15 17 Cl -0.03 -0.68 27.69 -2.72 -0.08 -0.76 15 18 N -0.73 -13.70 6.18 -345.82 -2.14 -15.84 15 19 C 0.16 2.93 8.62 127.61 1.10 4.03 15 20 S -0.19 -5.77 23.15 -56.49 -1.31 -7.08 15 21 O -0.40 -19.58 8.83 -148.98 -1.32 -20.89 15 22 H 0.27 16.15 8.31 -92.71 -0.77 15.38 15 23 H 0.07 2.72 8.04 -2.39 -0.02 2.70 15 24 H 0.08 3.02 8.14 -2.39 -0.02 3.00 15 25 H 0.10 2.70 8.14 -2.39 -0.02 2.68 15 26 H 0.08 2.50 7.69 -2.39 -0.02 2.48 15 27 H 0.43 5.42 8.96 -92.71 -0.83 4.59 15 28 H 0.13 1.51 8.14 -2.39 -0.02 1.49 15 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 15 Total: -1.00 -72.97 270.15 0.72 -72.25 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 0.29 Total: 0.88 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 3.15 Total: -20.67 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -1.84 Total: -75.83 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.32 Total: -20.89 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.82 Total: 52.10 kcal Atomic # 16 Polarization: -5.77 SS G_CDS: -1.31 Total: -7.08 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -72.97 0.72 -72.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689224.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.662 kcal (2) G-P(sol) polarization free energy of solvation -72.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds