Wall clock time and date at job start Mon Mar 30 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00055 * 2 1 4 4 H 1.48496 * 109.47196 * 269.99997 * 3 2 1 5 5 H 1.48495 * 109.46972 * 30.00389 * 3 2 1 6 6 H 1.48496 * 109.46903 * 150.00002 * 3 2 1 7 7 C 1.37881 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99602 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.33442 * 57.75139 * 9 7 2 11 11 C 1.54487 * 110.36834 * 179.97438 * 9 7 2 12 12 C 1.54510 * 104.06095 * 142.80773 * 11 9 7 13 13 C 1.54486 * 104.06135 * 0.02562 * 12 11 9 14 14 H 1.08996 * 110.37119 * 94.85075 * 13 12 11 15 15 C 1.50698 * 110.36944 * 217.18741 * 13 12 11 16 16 C 1.31703 * 126.88646 * 116.54650 * 15 13 12 17 17 Cl 1.73595 * 119.39603 * 359.97438 * 16 15 13 18 18 N 1.37694 * 121.20028 * 179.79515 * 16 15 13 19 19 C 1.47308 * 114.53664 * 0.50620 * 18 16 15 20 20 S 1.77686 * 126.89011 * 296.85773 * 15 13 12 21 21 O 1.44419 * 110.37238 * 295.37623 * 9 7 2 22 22 H 0.96998 * 119.99761 * 359.97438 * 1 2 3 23 23 H 1.08991 * 110.51176 * 261.45175 * 11 9 7 24 24 H 1.08995 * 110.51259 * 24.16664 * 11 9 7 25 25 H 1.09004 * 110.51047 * 118.64300 * 12 11 9 26 26 H 1.08993 * 110.51320 * 241.35845 * 12 11 9 27 27 H 0.97009 * 122.72408 * 180.26120 * 18 16 15 28 28 H 1.08999 * 110.86243 * 241.58422 * 19 18 16 29 29 H 1.08996 * 111.04168 * 118.00720 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5896 -2.5539 -0.8664 11 6 2.2363 -3.6890 -0.0028 12 6 1.5562 -4.7404 0.9023 13 6 0.2401 -4.0617 1.3426 14 1 -0.5776 -4.3572 0.6852 15 6 -0.0801 -4.4158 2.7719 16 6 -0.1526 -3.5885 3.7941 17 17 0.1406 -1.8960 3.5429 18 7 -0.4601 -4.0410 5.0576 19 6 -0.6804 -5.4946 5.1500 20 16 -0.4281 -6.0342 3.4176 21 8 0.4967 -2.6452 1.2211 22 1 -0.4850 0.8401 0.0004 23 1 2.3631 -4.0790 -1.0126 24 1 3.1973 -3.3894 0.4154 25 1 1.3466 -5.6503 0.3398 26 1 2.1808 -4.9607 1.7679 27 1 -0.5230 -3.4511 5.8251 28 1 -1.6957 -5.7131 5.4807 29 1 0.0501 -5.9598 5.8119 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725689225.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:46 Heat of formation + Delta-G solvation = -10.631540 kcal Electronic energy + Delta-G solvation = -15851.976169 eV Core-core repulsion = 13121.232834 eV Total energy + Delta-G solvation = -2730.743335 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.033 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.44567 -37.40051 -35.51936 -32.73062 -31.06316 -30.69713 -27.73332 -26.34400 -24.32503 -21.56471 -19.99174 -19.41217 -17.95648 -16.49379 -16.18033 -15.35445 -14.89329 -14.46537 -14.34587 -13.78270 -13.58195 -12.76543 -12.53265 -12.18174 -11.99638 -11.58784 -10.92384 -10.88750 -10.73969 -10.51970 -10.45370 -9.98131 -9.91968 -9.69225 -9.51226 -9.01882 -8.98553 -8.52563 -7.95088 -6.71501 -5.95896 -4.06454 1.51512 2.02896 2.30329 2.88000 3.32005 3.39081 3.42511 3.62182 4.45729 4.96643 5.05771 5.15541 5.36533 5.55425 5.78852 5.89373 6.01898 6.32733 6.47999 6.64559 6.77811 6.87037 6.92181 7.00539 7.39924 7.59340 7.94093 8.30538 8.61466 9.03355 9.62374 11.11322 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.007548 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.141939 B = 3708.593070 C = 4346.184188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.080 3.920 3 Si 0.883 3.117 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.201 3.799 10 H 0.027 0.973 11 C -0.145 4.145 12 C -0.140 4.140 13 C 0.152 3.848 14 H 0.061 0.939 15 C -0.184 4.184 16 C 0.174 3.826 17 Cl 0.022 6.978 18 N -0.744 5.744 19 C 0.157 3.843 20 S -0.153 6.153 21 O -0.323 6.323 22 H 0.259 0.741 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.415 0.585 28 H 0.090 0.910 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 -9.436 9.348 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.126 4.126 3 Si 0.711 3.289 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.145 3.855 10 H 0.044 0.956 11 C -0.183 4.183 12 C -0.178 4.178 13 C 0.091 3.909 14 H 0.078 0.922 15 C -0.306 4.306 16 C 0.039 3.961 17 Cl 0.050 6.950 18 N -0.383 5.383 19 C -0.080 4.080 20 S 0.079 5.921 21 O -0.242 6.242 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.254 0.746 28 H 0.108 0.892 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.757 -10.255 8.989 13.750 hybrid contribution 0.506 2.202 0.868 2.420 sum -1.250 -8.054 9.858 12.791 Atomic orbital electron populations 1.70033 1.05800 1.26278 1.47493 1.25016 0.94696 0.98894 0.93968 0.86751 0.80157 0.83887 0.78136 1.20558 1.21253 1.19805 1.20977 0.92501 0.89669 1.52679 0.92063 1.20541 0.87810 0.92311 0.84791 0.95579 1.23029 1.00870 0.96708 0.97693 1.22896 0.97138 0.98225 0.99560 1.20726 0.95618 0.88010 0.86547 0.92175 1.22573 1.18621 0.91411 0.98002 1.20381 1.00830 0.88998 0.85915 1.98533 1.93620 1.08050 1.94751 1.44624 1.79648 1.06550 1.07429 1.23920 1.04082 0.82717 0.97237 1.86096 1.89979 1.11767 1.04248 1.89810 1.75055 1.15319 1.44030 0.93117 0.92852 0.91856 0.92385 0.91806 0.74615 0.89170 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.97 13.07 55.43 0.72 -24.25 15 2 C 0.08 2.23 5.43 -17.82 -0.10 2.13 15 3 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 15 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.52 -14.41 8.77 -34.44 -0.30 -14.71 15 8 H 0.06 1.67 7.57 -52.49 -0.40 1.27 15 9 C 0.20 5.14 3.06 -27.10 -0.08 5.06 15 10 H 0.03 0.73 8.14 -51.93 -0.42 0.30 15 11 C -0.15 -3.08 6.62 -25.16 -0.17 -3.24 15 12 C -0.14 -2.68 6.62 -25.16 -0.17 -2.84 15 13 C 0.15 3.20 3.85 -27.10 -0.10 3.09 15 14 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 15 C -0.18 -3.46 5.82 -36.19 -0.21 -3.67 15 16 C 0.17 3.14 7.16 -16.80 -0.12 3.02 15 17 Cl 0.02 0.45 25.76 -51.86 -1.34 -0.89 15 18 N -0.74 -10.09 6.18 -60.67 -0.37 -10.47 15 19 C 0.16 1.78 8.62 60.29 0.52 2.29 15 20 S -0.15 -2.31 23.32 -107.50 -2.51 -4.82 15 21 O -0.32 -8.03 7.23 -35.23 -0.25 -8.28 15 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.06 1.36 7.71 -51.93 -0.40 0.96 15 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.06 1.20 7.87 -51.93 -0.41 0.79 15 27 H 0.42 4.61 8.96 -40.82 -0.37 4.24 15 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -30.15 271.63 -8.65 -38.80 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.24 Total: -1.63 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.73 Total: -8.88 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.35 Total: -34.71 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.25 Total: -8.28 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.51 Total: -4.82 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -1.34 Total: -0.89 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.15 -8.65 -38.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689225.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.168 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds