Wall clock time and date at job start Mon Mar 30 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00055 * 2 1 4 4 H 1.48496 * 109.47196 * 269.99997 * 3 2 1 5 5 H 1.48495 * 109.46972 * 30.00389 * 3 2 1 6 6 H 1.48496 * 109.46903 * 150.00002 * 3 2 1 7 7 C 1.37881 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99602 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.33442 * 57.75139 * 9 7 2 11 11 C 1.54487 * 110.36834 * 179.97438 * 9 7 2 12 12 C 1.54510 * 104.06095 * 142.80773 * 11 9 7 13 13 C 1.54486 * 104.06135 * 0.02562 * 12 11 9 14 14 H 1.08996 * 110.37119 * 94.85075 * 13 12 11 15 15 C 1.50698 * 110.36944 * 217.18741 * 13 12 11 16 16 C 1.31703 * 126.88646 * 116.54650 * 15 13 12 17 17 Cl 1.73595 * 119.39603 * 359.97438 * 16 15 13 18 18 N 1.37694 * 121.20028 * 179.79515 * 16 15 13 19 19 C 1.47308 * 114.53664 * 0.50620 * 18 16 15 20 20 S 1.77686 * 126.89011 * 296.85773 * 15 13 12 21 21 O 1.44419 * 110.37238 * 295.37623 * 9 7 2 22 22 H 0.96998 * 119.99761 * 359.97438 * 1 2 3 23 23 H 1.08991 * 110.51176 * 261.45175 * 11 9 7 24 24 H 1.08995 * 110.51259 * 24.16664 * 11 9 7 25 25 H 1.09004 * 110.51047 * 118.64300 * 12 11 9 26 26 H 1.08993 * 110.51320 * 241.35845 * 12 11 9 27 27 H 0.97009 * 122.72408 * 180.26120 * 18 16 15 28 28 H 1.08999 * 110.86243 * 241.58422 * 19 18 16 29 29 H 1.08996 * 111.04168 * 118.00720 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5896 -2.5539 -0.8664 11 6 2.2363 -3.6890 -0.0028 12 6 1.5562 -4.7404 0.9023 13 6 0.2401 -4.0617 1.3426 14 1 -0.5776 -4.3572 0.6852 15 6 -0.0801 -4.4158 2.7719 16 6 -0.1526 -3.5885 3.7941 17 17 0.1406 -1.8960 3.5429 18 7 -0.4601 -4.0410 5.0576 19 6 -0.6804 -5.4946 5.1500 20 16 -0.4281 -6.0342 3.4176 21 8 0.4967 -2.6452 1.2211 22 1 -0.4850 0.8401 0.0004 23 1 2.3631 -4.0790 -1.0126 24 1 3.1973 -3.3894 0.4154 25 1 1.3466 -5.6503 0.3398 26 1 2.1808 -4.9607 1.7679 27 1 -0.5230 -3.4511 5.8251 28 1 -1.6957 -5.7131 5.4807 29 1 0.0501 -5.9598 5.8119 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725689225.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:46 Heat of formation + Delta-G solvation = -30.242624 kcal Electronic energy + Delta-G solvation = -15852.826570 eV Core-core repulsion = 13121.232834 eV Total energy + Delta-G solvation = -2731.593736 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.033 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03573 -38.83927 -36.95166 -34.74684 -32.64763 -32.40462 -29.40685 -27.54203 -26.11498 -23.29559 -21.71270 -20.79420 -19.36261 -18.44537 -17.37144 -16.93083 -16.45043 -16.04716 -15.90140 -15.51529 -14.88626 -14.36192 -14.21867 -13.65697 -13.57036 -13.38854 -12.82631 -12.50736 -12.38104 -12.33995 -11.90992 -11.66996 -11.45487 -11.23838 -11.18361 -10.89928 -10.64139 -10.24462 -9.81870 -8.07588 -7.91683 -6.24678 0.30816 0.88527 0.89768 1.40599 1.41946 1.51567 1.59532 2.40293 2.44056 3.16690 3.78749 3.96411 4.18619 4.18759 4.26697 4.29452 4.47621 4.67144 4.84853 4.97128 5.08070 5.18860 5.32368 5.58951 5.68343 5.81803 6.26445 6.36644 6.64227 7.00044 7.48087 8.99769 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.007548 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.141939 B = 3708.593070 C = 4346.184188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.034 3.966 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.194 3.806 10 H -0.007 1.007 11 C -0.137 4.137 12 C -0.125 4.125 13 C 0.144 3.856 14 H 0.049 0.951 15 C -0.218 4.218 16 C 0.181 3.819 17 Cl -0.012 7.012 18 N -0.733 5.733 19 C 0.162 3.838 20 S -0.151 6.151 21 O -0.341 6.341 22 H 0.258 0.742 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.428 0.572 28 H 0.122 0.878 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -10.676 10.953 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.168 4.168 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.137 3.863 10 H 0.011 0.989 11 C -0.175 4.175 12 C -0.163 4.163 13 C 0.083 3.917 14 H 0.067 0.933 15 C -0.341 4.341 16 C 0.043 3.957 17 Cl 0.016 6.984 18 N -0.372 5.372 19 C -0.072 4.072 20 S 0.081 5.919 21 O -0.260 6.260 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.269 0.731 28 H 0.140 0.860 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.331 -11.511 10.623 15.720 hybrid contribution 0.310 2.482 0.444 2.541 sum -1.021 -9.029 11.067 14.319 Atomic orbital electron populations 1.70161 1.07211 1.26898 1.48681 1.25722 0.95415 1.02081 0.93598 0.85783 0.78941 0.79844 0.78456 1.19618 1.21182 1.19259 1.21301 0.92665 0.91043 1.52591 0.92209 1.20408 0.88176 0.93465 0.84203 0.98937 1.22909 0.99607 0.95732 0.99285 1.22795 0.95833 0.98222 0.99454 1.20801 0.96203 0.86252 0.88442 0.93282 1.22388 1.20306 0.94239 0.97122 1.20480 1.00414 0.87256 0.87563 1.98524 1.93860 1.10904 1.95091 1.44619 1.78557 1.07920 1.06136 1.24337 1.07049 0.80870 0.94987 1.85976 1.89995 1.09072 1.06866 1.89749 1.75146 1.18052 1.43049 0.93270 0.91172 0.92217 0.89919 0.91262 0.73089 0.86024 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.16 13.07 21.45 0.28 -52.88 15 2 C 0.03 1.95 5.43 84.66 0.46 2.41 15 3 Si 0.94 44.24 29.54 68.60 2.03 46.27 15 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 15 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 7 C -0.54 -30.38 8.77 25.60 0.22 -30.15 15 8 H 0.06 3.29 7.57 -2.91 -0.02 3.27 15 9 C 0.19 10.16 3.06 30.35 0.09 10.25 15 10 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 11 C -0.14 -5.80 6.62 31.61 0.21 -5.59 15 12 C -0.13 -4.65 6.62 31.61 0.21 -4.44 15 13 C 0.14 6.07 3.85 30.35 0.12 6.18 15 14 H 0.05 2.13 8.14 -2.39 -0.02 2.11 15 15 C -0.22 -7.99 5.82 24.99 0.15 -7.84 15 16 C 0.18 6.29 7.16 83.08 0.59 6.88 15 17 Cl -0.01 -0.51 25.76 -2.72 -0.07 -0.58 15 18 N -0.73 -17.81 6.18 -345.85 -2.14 -19.95 15 19 C 0.16 2.99 8.62 127.61 1.10 4.09 15 20 S -0.15 -4.16 23.32 -56.49 -1.32 -5.48 15 21 O -0.34 -17.33 7.23 -148.98 -1.08 -18.41 15 22 H 0.26 14.69 8.31 -92.71 -0.77 13.92 15 23 H 0.07 2.67 8.14 -2.39 -0.02 2.65 15 24 H 0.06 2.53 7.71 -2.39 -0.02 2.51 15 25 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 26 H 0.07 2.49 7.87 -2.39 -0.02 2.47 15 27 H 0.43 8.27 8.96 -92.70 -0.83 7.44 15 28 H 0.12 1.62 8.14 -2.39 -0.02 1.60 15 29 H 0.12 1.61 8.14 -2.39 -0.02 1.59 15 Total: -1.00 -66.25 271.63 1.20 -65.04 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: 0.34 Total: 4.18 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 3.15 Total: -18.20 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.86 Total: -72.83 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.08 Total: -18.41 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -1.32 Total: -5.48 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.07 Total: -0.58 kcal Total: -66.25 1.20 -65.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689225.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.800 kcal (2) G-P(sol) polarization free energy of solvation -66.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds