Wall clock time and date at job start Mon Mar 30 2020 07:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47151 * 2 1 4 4 H 1.08995 * 109.46954 * 176.73127 * 3 2 1 5 5 C 1.50695 * 109.46946 * 56.73556 * 3 2 1 6 6 H 1.08006 * 120.00098 * 240.00047 * 5 3 2 7 7 C 1.37877 * 120.00236 * 60.00125 * 5 3 2 8 8 N 1.31509 * 120.00268 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99884 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47164 * 90.00049 * 9 7 5 11 11 H 1.48503 * 109.46772 * 209.99539 * 9 7 5 12 12 H 1.48493 * 109.47042 * 329.99688 * 9 7 5 13 13 S 1.81392 * 109.47105 * 296.73385 * 3 2 1 14 14 C 1.81398 * 103.00123 * 292.70743 * 13 3 2 15 15 C 1.50704 * 109.47285 * 175.41532 * 14 13 3 16 16 C 1.34493 * 125.77620 * 89.99871 * 15 14 13 17 17 C 1.41410 * 106.84723 * 180.02562 * 16 15 14 18 18 C 1.34643 * 106.83140 * 359.97438 * 17 16 15 19 19 Cl 1.73603 * 125.80073 * 179.97438 * 18 17 16 20 20 O 1.34304 * 108.40177 * 359.74003 * 18 17 16 21 21 H 1.08996 * 109.47165 * 175.25732 * 1 2 3 22 22 H 1.09006 * 109.46929 * 55.25929 * 1 2 3 23 23 H 1.08996 * 109.47164 * 295.26067 * 1 2 3 24 24 H 1.08997 * 109.46762 * 119.99473 * 2 1 3 25 25 H 1.08993 * 109.47277 * 239.99905 * 2 1 3 26 26 H 0.97001 * 120.00695 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47206 * 295.41513 * 14 13 3 28 28 H 1.08996 * 109.47523 * 55.41701 * 14 13 3 29 29 H 1.08000 * 126.57590 * 359.96201 * 16 15 14 30 30 H 1.08001 * 126.58243 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1284 1.4431 0.0586 5 6 1.4727 2.1759 1.1880 6 1 0.8584 3.0517 1.0391 7 6 1.7379 1.7289 2.4650 8 7 2.4854 0.6622 2.6465 9 14 1.0351 2.6384 3.9377 10 1 -0.2933 2.0711 4.2821 11 1 1.9526 2.4887 5.0958 12 1 0.8876 4.0783 3.6058 13 16 1.5163 2.2691 -1.5274 14 6 2.4605 1.3972 -2.8076 15 6 2.0474 1.9004 -4.1668 16 6 2.6062 2.9301 -4.8272 17 6 1.9136 3.0546 -6.0538 18 6 0.9724 2.0919 -6.0695 19 17 -0.1606 1.8002 -7.3520 20 8 1.0624 1.3923 -4.9265 21 1 -0.3633 -1.0241 -0.0850 22 1 -0.3633 0.5857 -0.8445 23 1 -0.3633 0.4385 0.9294 24 1 1.8933 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.6717 0.3475 3.5449 27 1 3.5251 1.5790 -2.6610 28 1 2.2619 0.3276 -2.7405 29 1 3.4260 3.5448 -4.4858 30 1 2.1038 3.7816 -6.8295 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757169083.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:42 Heat of formation + Delta-G solvation = -1.202519 kcal Electronic energy + Delta-G solvation = -14793.002699 eV Core-core repulsion = 12128.094148 eV Total energy + Delta-G solvation = -2664.908551 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.61184 -37.06202 -34.84263 -33.28818 -31.76712 -31.29728 -27.10658 -26.41449 -23.78058 -21.96736 -20.67166 -20.12239 -17.80292 -16.58983 -16.31167 -15.41353 -14.73883 -14.49747 -13.94296 -13.49999 -13.39228 -13.15229 -12.92298 -12.52166 -12.22769 -12.12815 -11.91199 -11.39230 -11.02003 -10.81717 -10.60660 -10.31938 -10.10550 -9.93499 -9.85477 -9.26214 -8.77863 -8.47649 -8.24523 -6.72358 -6.18077 -4.24742 1.13601 1.39484 2.27501 2.93295 3.23861 3.30587 3.35474 3.39261 3.77485 4.32799 4.78256 4.89072 5.14184 5.32711 5.52620 5.62084 5.82630 5.87326 6.28966 6.35959 6.43741 6.54717 6.96077 6.97043 7.11843 7.22569 7.50045 7.62102 7.82478 8.06456 8.73398 9.37576 10.87900 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.042874 B = 0.004332 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.913634 B = 6461.708278 C = 6579.718868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C 0.113 3.887 4 H 0.044 0.956 5 C -0.499 4.499 6 H 0.066 0.934 7 C 0.071 3.929 8 N -0.888 5.888 9 Si 0.902 3.098 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.272 1.272 13 S -0.280 6.280 14 C -0.023 4.023 15 C 0.045 3.955 16 C -0.196 4.196 17 C -0.170 4.170 18 C 0.016 3.984 19 Cl 0.016 6.984 20 O -0.163 6.163 21 H 0.022 0.978 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.015 0.985 26 H 0.264 0.736 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.159 0.841 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 1.110 -14.675 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 C -0.014 4.014 4 H 0.062 0.938 5 C -0.539 4.539 6 H 0.084 0.916 7 C -0.133 4.133 8 N -0.526 5.526 9 Si 0.729 3.271 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 S -0.050 6.050 14 C -0.170 4.170 15 C -0.006 4.006 16 C -0.217 4.217 17 C -0.191 4.191 18 C -0.061 4.061 19 Cl 0.045 6.955 20 O -0.061 6.061 21 H 0.041 0.959 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.117 0.883 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.177 0.823 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.172 1.559 -14.672 14.801 hybrid contribution 0.415 -0.551 0.739 1.011 sum -0.757 1.007 -13.934 13.990 Atomic orbital electron populations 1.21653 0.96765 0.98207 1.02413 1.21719 0.95906 0.97464 1.00401 1.20989 0.98426 0.93910 0.88078 0.93771 1.20559 1.32380 1.12261 0.88652 0.91635 1.24852 0.94870 0.95023 0.98548 1.69855 1.37277 1.23142 1.22314 0.86419 0.78881 0.80253 0.81545 1.20411 1.21046 1.19628 1.86952 1.61677 1.52220 1.04127 1.21736 1.02757 1.03618 0.88920 1.21796 0.89372 0.96424 0.93047 1.21529 1.04744 1.00584 0.94886 1.21480 0.96968 1.00481 1.00148 1.22299 0.99103 0.97593 0.87140 1.98408 1.59442 1.96315 1.41374 1.83948 1.47066 1.50170 1.24908 0.95871 0.93033 0.92179 0.88326 0.96635 0.92559 0.87469 0.88670 0.82314 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.40 37.16 0.35 -2.54 16 2 C -0.11 -2.62 5.39 -26.73 -0.14 -2.76 16 3 C 0.11 2.71 2.50 -27.88 -0.07 2.64 16 4 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 5 C -0.50 -13.12 7.25 -34.44 -0.25 -13.37 16 6 H 0.07 1.77 7.71 -52.48 -0.40 1.37 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -23.87 11.35 55.43 0.63 -23.24 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 S -0.28 -5.88 19.67 -107.50 -2.11 -8.00 16 14 C -0.02 -0.39 6.28 36.01 0.23 -0.16 16 15 C 0.05 0.72 6.58 -35.63 -0.23 0.48 16 16 C -0.20 -2.69 10.81 -39.70 -0.43 -3.12 16 17 C -0.17 -2.14 10.88 -39.65 -0.43 -2.58 16 18 C 0.02 0.22 7.93 29.46 0.23 0.45 16 19 Cl 0.02 0.18 29.30 -51.86 -1.52 -1.34 16 20 O -0.16 -2.67 10.65 5.51 0.06 -2.61 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 1.10 6.90 -51.93 -0.36 0.74 16 23 H 0.06 1.41 7.31 -51.93 -0.38 1.03 16 24 H 0.10 2.48 6.16 -51.93 -0.32 2.16 16 25 H 0.01 0.31 6.82 -51.93 -0.35 -0.04 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.09 1.57 6.97 -51.93 -0.36 1.21 16 29 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 284.90 15.07 4.29 4.29 Total: -1.00 -26.96 284.90 -7.94 -34.91 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.43 Total: -0.40 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -0.84 Total: -19.19 kcal Atomic # 7 Polarization: -23.87 SS G_CDS: 0.63 Total: -23.24 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.06 Total: -2.61 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -5.88 SS G_CDS: -2.11 Total: -8.00 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.52 Total: -1.34 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.96 -7.94 -34.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757169083.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.703 kcal (2) G-P(sol) polarization free energy of solvation -26.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds