Wall clock time and date at job start Mon Mar 30 2020 07:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47151 * 2 1 4 4 H 1.08995 * 109.46954 * 176.73127 * 3 2 1 5 5 C 1.50695 * 109.46946 * 56.73556 * 3 2 1 6 6 H 1.08006 * 120.00098 * 240.00047 * 5 3 2 7 7 C 1.37877 * 120.00236 * 60.00125 * 5 3 2 8 8 N 1.31509 * 120.00268 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99884 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47164 * 90.00049 * 9 7 5 11 11 H 1.48503 * 109.46772 * 209.99539 * 9 7 5 12 12 H 1.48493 * 109.47042 * 329.99688 * 9 7 5 13 13 S 1.81392 * 109.47105 * 296.73385 * 3 2 1 14 14 C 1.81398 * 103.00123 * 292.70743 * 13 3 2 15 15 C 1.50704 * 109.47285 * 175.41532 * 14 13 3 16 16 C 1.34493 * 125.77620 * 89.99871 * 15 14 13 17 17 C 1.41410 * 106.84723 * 180.02562 * 16 15 14 18 18 C 1.34643 * 106.83140 * 359.97438 * 17 16 15 19 19 Cl 1.73603 * 125.80073 * 179.97438 * 18 17 16 20 20 O 1.34304 * 108.40177 * 359.74003 * 18 17 16 21 21 H 1.08996 * 109.47165 * 175.25732 * 1 2 3 22 22 H 1.09006 * 109.46929 * 55.25929 * 1 2 3 23 23 H 1.08996 * 109.47164 * 295.26067 * 1 2 3 24 24 H 1.08997 * 109.46762 * 119.99473 * 2 1 3 25 25 H 1.08993 * 109.47277 * 239.99905 * 2 1 3 26 26 H 0.97001 * 120.00695 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47206 * 295.41513 * 14 13 3 28 28 H 1.08996 * 109.47523 * 55.41701 * 14 13 3 29 29 H 1.08000 * 126.57590 * 359.96201 * 16 15 14 30 30 H 1.08001 * 126.58243 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1284 1.4431 0.0586 5 6 1.4727 2.1759 1.1880 6 1 0.8584 3.0517 1.0391 7 6 1.7379 1.7289 2.4650 8 7 2.4854 0.6622 2.6465 9 14 1.0351 2.6384 3.9377 10 1 -0.2933 2.0711 4.2821 11 1 1.9526 2.4887 5.0958 12 1 0.8876 4.0783 3.6058 13 16 1.5163 2.2691 -1.5274 14 6 2.4605 1.3972 -2.8076 15 6 2.0474 1.9004 -4.1668 16 6 2.6062 2.9301 -4.8272 17 6 1.9136 3.0546 -6.0538 18 6 0.9724 2.0919 -6.0695 19 17 -0.1606 1.8002 -7.3520 20 8 1.0624 1.3923 -4.9265 21 1 -0.3633 -1.0241 -0.0850 22 1 -0.3633 0.5857 -0.8445 23 1 -0.3633 0.4385 0.9294 24 1 1.8933 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.6717 0.3475 3.5449 27 1 3.5251 1.5790 -2.6610 28 1 2.2619 0.3276 -2.7405 29 1 3.4260 3.5448 -4.4858 30 1 2.1038 3.7816 -6.8295 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757169083.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:41 Heat of formation + Delta-G solvation = -13.931779 kcal Electronic energy + Delta-G solvation = -14793.554681 eV Core-core repulsion = 12128.094148 eV Total energy + Delta-G solvation = -2665.460534 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.71857 -38.02280 -36.74315 -34.41012 -33.41304 -32.77857 -29.01609 -27.62637 -25.67361 -23.04215 -22.03745 -21.74107 -18.98786 -18.26197 -17.64310 -17.19526 -16.23790 -15.95318 -15.52591 -15.10493 -14.83168 -14.38754 -14.30661 -13.94985 -13.77758 -13.36562 -13.17988 -12.83896 -12.63026 -12.45525 -12.34238 -12.05561 -11.88949 -11.72862 -11.16952 -10.97831 -10.65625 -10.35564 -9.38816 -8.40002 -8.17365 -6.30454 0.07856 0.22155 1.06875 1.42034 1.43964 1.53346 1.68562 2.01704 2.32091 2.42040 3.12177 3.62142 3.90405 4.06379 4.34943 4.49795 4.52416 4.61429 4.69882 4.75288 4.85950 5.15618 5.29950 5.33678 5.34774 5.64114 5.66880 5.85626 5.87703 6.13306 6.69853 7.34525 8.87410 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.042874 B = 0.004332 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.913634 B = 6461.708278 C = 6579.718868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.031 3.969 8 N -0.909 5.909 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.271 1.271 13 S -0.302 6.302 14 C -0.007 4.007 15 C 0.013 3.987 16 C -0.181 4.181 17 C -0.164 4.164 18 C 0.005 3.995 19 Cl 0.034 6.966 20 O -0.186 6.186 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.266 0.734 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.179 0.821 30 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 1.673 -16.079 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C -0.016 4.016 4 H 0.039 0.961 5 C -0.553 4.553 6 H 0.070 0.930 7 C -0.170 4.170 8 N -0.548 5.548 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.196 1.196 13 S -0.072 6.072 14 C -0.154 4.154 15 C -0.038 4.038 16 C -0.203 4.203 17 C -0.184 4.184 18 C -0.072 4.072 19 Cl 0.063 6.937 20 O -0.085 6.085 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.197 0.803 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.223 2.123 -16.072 16.258 hybrid contribution 0.432 -0.712 0.990 1.293 sum -0.791 1.411 -15.082 15.169 Atomic orbital electron populations 1.21541 0.95945 0.99412 1.01176 1.21601 0.96530 0.96680 1.00071 1.20752 0.96812 0.94664 0.89375 0.96143 1.20734 1.32381 1.12105 0.90078 0.93038 1.25516 0.95105 0.95664 1.00751 1.69954 1.37987 1.24020 1.22798 0.85574 0.78367 0.79088 0.78824 1.20032 1.20426 1.19615 1.86841 1.62945 1.53054 1.04313 1.21669 1.02859 1.02878 0.87963 1.21669 0.90851 0.98123 0.93144 1.21908 1.04388 0.99223 0.94791 1.21887 0.95814 1.00393 1.00300 1.22768 0.99815 0.97615 0.86981 1.98415 1.58822 1.96249 1.40202 1.83905 1.47557 1.51147 1.25896 0.93624 0.92872 0.94455 0.90812 0.94706 0.92471 0.85678 0.88653 0.80332 0.79250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 9.40 71.98 0.68 -4.65 16 2 C -0.11 -4.98 5.39 30.60 0.16 -4.81 16 3 C 0.11 5.43 2.50 29.85 0.07 5.50 16 4 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.51 -27.48 7.25 25.60 0.19 -27.29 16 6 H 0.05 2.84 7.71 -2.91 -0.02 2.82 16 7 C 0.03 1.65 5.30 84.66 0.45 2.09 16 8 N -0.91 -49.50 11.35 21.45 0.24 -49.26 16 9 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 S -0.30 -12.65 19.67 -56.49 -1.11 -13.76 16 14 C -0.01 -0.22 6.28 71.24 0.45 0.23 16 15 C 0.01 0.39 6.58 24.83 0.16 0.56 16 16 C -0.18 -4.50 10.81 22.19 0.24 -4.26 16 17 C -0.16 -3.62 10.88 22.23 0.24 -3.38 16 18 C 0.00 0.13 7.93 67.00 0.53 0.66 16 19 Cl 0.03 0.72 29.30 -2.72 -0.08 0.64 16 20 O -0.19 -5.84 10.65 -3.19 -0.03 -5.88 16 21 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.05 2.25 6.90 -2.38 -0.02 2.24 16 23 H 0.04 1.75 7.31 -2.39 -0.02 1.73 16 24 H 0.07 3.77 6.16 -2.39 -0.01 3.75 16 25 H 0.03 1.42 6.82 -2.39 -0.02 1.40 16 26 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 27 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 28 H 0.09 3.06 6.97 -2.39 -0.02 3.04 16 29 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.19 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -57.64 284.90 5.36 -52.28 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.14 Total: 6.87 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 3.18 Total: -35.36 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.24 Total: -49.26 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.03 Total: -5.88 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -12.65 SS G_CDS: -1.11 Total: -13.76 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -57.64 5.36 -52.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757169083.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.347 kcal (2) G-P(sol) polarization free energy of solvation -57.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds