Wall clock time and date at job start Mon Mar 30 2020 07:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 H 1.09000 * 109.46916 * 54.62002 * 3 2 1 5 5 C 1.50705 * 109.47252 * 174.61732 * 3 2 1 6 6 H 1.08002 * 120.00211 * 120.00275 * 5 3 2 7 7 C 1.37884 * 119.99717 * 300.00032 * 5 3 2 8 8 N 1.31509 * 120.00136 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99839 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46733 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46810 * 119.99938 * 9 7 5 12 12 H 1.48496 * 109.47024 * 240.00321 * 9 7 5 13 13 S 1.81401 * 109.47279 * 294.61699 * 3 2 1 14 14 C 1.81401 * 103.00102 * 173.16325 * 13 3 2 15 15 C 1.50696 * 109.47091 * 175.13060 * 14 13 3 16 16 C 1.34497 * 125.77463 * 90.00274 * 15 14 13 17 17 C 1.41409 * 106.85107 * 179.97438 * 16 15 14 18 18 C 1.34653 * 106.82804 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 125.80169 * 179.97438 * 18 17 16 20 20 O 1.34301 * 108.40164 * 359.97438 * 18 17 16 21 21 H 1.08994 * 109.47071 * 295.45333 * 1 2 3 22 22 H 1.08997 * 109.47253 * 55.45609 * 1 2 3 23 23 H 1.09005 * 109.47089 * 175.45625 * 1 2 3 24 24 H 1.09005 * 109.47222 * 240.00054 * 2 1 3 25 25 H 1.09001 * 109.47096 * 120.00496 * 2 1 3 26 26 H 0.96997 * 120.00521 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47039 * 55.13428 * 14 13 3 28 28 H 1.09001 * 109.46994 * 295.13424 * 14 13 3 29 29 H 1.07996 * 126.57269 * 359.97438 * 16 15 14 30 30 H 1.07994 * 126.58641 * 179.73573 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6001 1.9833 0.8379 5 6 3.5411 1.4446 0.1333 6 1 4.1513 1.8875 -0.6400 7 6 4.1355 0.8811 1.2425 8 7 3.3925 0.3423 2.1844 9 14 5.9962 0.8831 1.4074 10 1 6.5974 1.5457 0.2222 11 1 6.3834 1.6215 2.6362 12 1 6.4868 -0.5157 1.4951 13 16 1.5699 2.2501 -1.5548 14 6 2.0650 3.9742 -1.2851 15 6 1.8454 4.7636 -2.5498 16 6 0.7175 5.4156 -2.8839 17 6 0.9487 6.0159 -4.1432 18 6 2.2058 5.6948 -4.5032 19 17 2.9966 6.1781 -5.9712 20 8 2.7440 4.9370 -3.5338 21 1 -0.3633 0.4416 0.9279 22 1 -0.3633 0.5827 -0.8464 23 1 -0.3633 -1.0245 -0.0814 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8105 -0.0544 2.9645 27 1 3.1198 4.0109 -1.0124 28 1 1.4667 4.4025 -0.4809 29 1 -0.1906 5.4702 -2.3019 30 1 0.2498 6.6136 -4.7094 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757169092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:44 Heat of formation + Delta-G solvation = -4.072087 kcal Electronic energy + Delta-G solvation = -14744.939341 eV Core-core repulsion = 12079.906356 eV Total energy + Delta-G solvation = -2665.032985 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.55480 -37.01600 -34.66583 -33.23095 -31.74086 -31.48311 -27.67205 -26.14683 -23.25618 -21.91148 -20.82657 -20.11283 -17.65158 -16.55695 -16.42321 -15.49935 -14.76209 -14.49127 -13.89957 -13.66909 -13.24747 -13.01606 -12.87944 -12.36331 -12.17219 -12.09452 -11.67737 -11.38213 -11.17591 -11.01541 -10.91751 -10.39118 -10.09710 -9.88108 -9.83746 -9.24921 -8.91667 -8.42341 -8.20140 -6.77014 -6.12374 -4.28057 1.19116 1.45612 2.33721 3.02238 3.20965 3.29787 3.34182 3.47093 3.78177 4.32415 4.86108 4.93424 5.11873 5.48609 5.59636 5.73078 5.86890 6.03731 6.15216 6.27377 6.43004 6.43158 6.85627 6.93234 7.02927 7.03872 7.43113 7.64039 7.80007 8.08300 8.73436 9.37352 10.85963 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.005308 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.057153 B = 5273.994100 C = 6131.864887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C 0.115 3.885 4 H 0.046 0.954 5 C -0.523 4.523 6 H 0.066 0.934 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.281 1.281 13 S -0.300 6.300 14 C -0.007 4.007 15 C 0.047 3.953 16 C -0.198 4.198 17 C -0.171 4.171 18 C 0.015 3.985 19 Cl 0.015 6.985 20 O -0.162 6.162 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.107 0.893 26 H 0.264 0.736 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.158 0.842 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 9.343 -8.901 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.012 4.012 4 H 0.064 0.936 5 C -0.562 4.562 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.723 3.277 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.207 1.207 13 S -0.070 6.070 14 C -0.154 4.154 15 C -0.005 4.005 16 C -0.220 4.220 17 C -0.192 4.192 18 C -0.062 4.062 19 Cl 0.044 6.956 20 O -0.059 6.059 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.125 0.875 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.176 0.824 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.534 8.705 -9.736 13.825 hybrid contribution 1.596 0.550 0.984 1.954 sum -2.938 9.255 -8.752 13.073 Atomic orbital electron populations 1.21900 0.98415 0.99599 1.00933 1.21456 0.92463 0.97323 1.03181 1.20929 0.98641 0.94437 0.87205 0.93630 1.21392 0.90071 1.39174 1.05604 0.91566 1.24978 0.98481 0.94664 0.95359 1.69855 1.35098 1.38046 1.09407 0.86452 0.85068 0.77995 0.78151 1.19549 1.20881 1.20733 1.86411 1.81415 1.04377 1.34832 1.21586 1.07005 0.95346 0.91446 1.21939 0.88056 1.00229 0.90287 1.21513 0.99642 1.03309 0.97570 1.21465 0.94592 1.05288 0.97830 1.22306 0.92357 1.02698 0.88833 1.98405 1.81889 1.88610 1.26739 1.83970 1.41090 1.55659 1.25204 0.93629 0.93071 0.94564 0.93963 0.87467 0.92614 0.87738 0.87499 0.82392 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.81 37.16 0.36 -2.59 16 2 C -0.10 -2.41 5.24 -26.73 -0.14 -2.55 16 3 C 0.12 2.75 2.19 -27.88 -0.06 2.69 16 4 H 0.05 1.16 8.14 -51.92 -0.42 0.73 16 5 C -0.52 -13.66 8.22 -34.44 -0.28 -13.94 16 6 H 0.07 1.76 7.67 -52.49 -0.40 1.36 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.89 -23.85 11.29 55.43 0.63 -23.22 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 S -0.30 -6.30 19.80 -107.50 -2.13 -8.42 16 14 C -0.01 -0.12 6.32 36.00 0.23 0.11 16 15 C 0.05 0.77 6.58 -35.63 -0.23 0.54 16 16 C -0.20 -2.79 10.81 -39.70 -0.43 -3.22 16 17 C -0.17 -2.22 10.88 -39.64 -0.43 -2.65 16 18 C 0.02 0.22 7.93 29.46 0.23 0.45 16 19 Cl 0.01 0.18 29.30 -51.86 -1.52 -1.34 16 20 O -0.16 -2.80 10.65 5.52 0.06 -2.74 16 21 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.97 7.01 -51.93 -0.36 0.61 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.11 2.72 5.95 -51.93 -0.31 2.42 16 26 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.10 1.98 7.90 -51.92 -0.41 1.57 16 28 H 0.11 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 288.85 15.07 4.35 4.35 Total: -1.00 -26.94 288.85 -8.06 -34.99 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.58 Total: 0.29 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -0.85 Total: -19.45 kcal Atomic # 7 Polarization: -23.85 SS G_CDS: 0.63 Total: -23.22 kcal Atomic # 8 Polarization: -2.80 SS G_CDS: 0.06 Total: -2.74 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -2.13 Total: -8.42 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.52 Total: -1.34 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.94 -8.06 -34.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757169092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.923 kcal (2) G-P(sol) polarization free energy of solvation -26.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds