Wall clock time and date at job start Mon Mar 30 2020 07:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 H 1.09000 * 109.46916 * 54.62002 * 3 2 1 5 5 C 1.50705 * 109.47252 * 174.61732 * 3 2 1 6 6 H 1.08002 * 120.00211 * 120.00275 * 5 3 2 7 7 C 1.37884 * 119.99717 * 300.00032 * 5 3 2 8 8 N 1.31509 * 120.00136 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99839 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46733 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46810 * 119.99938 * 9 7 5 12 12 H 1.48496 * 109.47024 * 240.00321 * 9 7 5 13 13 S 1.81401 * 109.47279 * 294.61699 * 3 2 1 14 14 C 1.81401 * 103.00102 * 173.16325 * 13 3 2 15 15 C 1.50696 * 109.47091 * 175.13060 * 14 13 3 16 16 C 1.34497 * 125.77463 * 90.00274 * 15 14 13 17 17 C 1.41409 * 106.85107 * 179.97438 * 16 15 14 18 18 C 1.34653 * 106.82804 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 125.80169 * 179.97438 * 18 17 16 20 20 O 1.34301 * 108.40164 * 359.97438 * 18 17 16 21 21 H 1.08994 * 109.47071 * 295.45333 * 1 2 3 22 22 H 1.08997 * 109.47253 * 55.45609 * 1 2 3 23 23 H 1.09005 * 109.47089 * 175.45625 * 1 2 3 24 24 H 1.09005 * 109.47222 * 240.00054 * 2 1 3 25 25 H 1.09001 * 109.47096 * 120.00496 * 2 1 3 26 26 H 0.96997 * 120.00521 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47039 * 55.13428 * 14 13 3 28 28 H 1.09001 * 109.46994 * 295.13424 * 14 13 3 29 29 H 1.07996 * 126.57269 * 359.97438 * 16 15 14 30 30 H 1.07994 * 126.58641 * 179.73573 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6001 1.9833 0.8379 5 6 3.5411 1.4446 0.1333 6 1 4.1513 1.8875 -0.6400 7 6 4.1355 0.8811 1.2425 8 7 3.3925 0.3423 2.1844 9 14 5.9962 0.8831 1.4074 10 1 6.5974 1.5457 0.2222 11 1 6.3834 1.6215 2.6362 12 1 6.4868 -0.5157 1.4951 13 16 1.5699 2.2501 -1.5548 14 6 2.0650 3.9742 -1.2851 15 6 1.8454 4.7636 -2.5498 16 6 0.7175 5.4156 -2.8839 17 6 0.9487 6.0159 -4.1432 18 6 2.2058 5.6948 -4.5032 19 17 2.9966 6.1781 -5.9712 20 8 2.7440 4.9370 -3.5338 21 1 -0.3633 0.4416 0.9279 22 1 -0.3633 0.5827 -0.8464 23 1 -0.3633 -1.0245 -0.0814 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8105 -0.0544 2.9645 27 1 3.1198 4.0109 -1.0124 28 1 1.4667 4.4025 -0.4809 29 1 -0.1906 5.4702 -2.3019 30 1 0.2498 6.6136 -4.7094 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757169092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:44 Heat of formation + Delta-G solvation = -16.676516 kcal Electronic energy + Delta-G solvation = -14745.485910 eV Core-core repulsion = 12079.906356 eV Total energy + Delta-G solvation = -2665.579554 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.71784 -38.02395 -36.56192 -34.40820 -33.56231 -32.81666 -29.50619 -27.42926 -25.16002 -23.03430 -22.34876 -21.56455 -18.80124 -18.56908 -17.67583 -17.22304 -16.34899 -15.91823 -15.64771 -15.03796 -14.77329 -14.33899 -13.96822 -13.91753 -13.74781 -13.30291 -13.23253 -12.96235 -12.79973 -12.69461 -12.33788 -12.18641 -11.83438 -11.68539 -11.16191 -10.95729 -10.79360 -10.33748 -9.38488 -8.52170 -8.06590 -6.34771 0.09913 0.23404 1.10608 1.37427 1.41191 1.51077 1.70250 1.99491 2.32796 2.40572 3.08647 3.64497 3.91440 4.13874 4.42344 4.45876 4.53376 4.58826 4.73141 4.77013 4.86458 5.01451 5.27564 5.30848 5.35926 5.53224 5.69009 5.82046 5.87456 6.14667 6.69025 7.32817 8.84575 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.005308 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.057153 B = 5273.994100 C = 6131.864887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C 0.112 3.888 4 H 0.025 0.975 5 C -0.537 4.537 6 H 0.053 0.947 7 C 0.028 3.972 8 N -0.907 5.907 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.278 1.278 13 S -0.304 6.304 14 C 0.005 3.995 15 C 0.011 3.989 16 C -0.178 4.178 17 C -0.162 4.162 18 C 0.003 3.997 19 Cl 0.033 6.967 20 O -0.190 6.190 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.031 0.969 25 H 0.081 0.919 26 H 0.266 0.734 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.183 0.817 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 10.478 -9.860 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C -0.015 4.015 4 H 0.043 0.957 5 C -0.576 4.576 6 H 0.072 0.928 7 C -0.173 4.173 8 N -0.545 5.545 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.202 1.202 12 H -0.203 1.203 13 S -0.074 6.074 14 C -0.142 4.142 15 C -0.040 4.040 16 C -0.200 4.200 17 C -0.182 4.182 18 C -0.074 4.074 19 Cl 0.062 6.938 20 O -0.089 6.089 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.144 0.856 29 H 0.200 0.800 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.326 9.835 -10.695 15.475 hybrid contribution 1.832 0.304 1.172 2.196 sum -3.494 10.139 -9.523 14.342 Atomic orbital electron populations 1.21771 0.95564 1.01093 1.01244 1.21327 0.94989 0.96448 1.01313 1.20721 0.97362 0.95132 0.88318 0.95671 1.21556 0.91402 1.39233 1.05449 0.92845 1.25627 1.02152 0.94401 0.95149 1.69953 1.36466 1.38411 1.09715 0.85581 0.80626 0.77986 0.77999 1.19813 1.20189 1.20347 1.86230 1.81239 1.07136 1.32810 1.21523 1.06070 0.93347 0.93301 1.21761 0.89324 1.02414 0.90474 1.21908 0.99252 1.01084 0.97735 1.21898 0.94364 1.04611 0.97303 1.22812 0.93195 1.02383 0.89010 1.98411 1.81744 1.88299 1.25361 1.83920 1.42138 1.56789 1.26077 0.93503 0.92423 0.92522 0.95035 0.90048 0.92450 0.89625 0.85622 0.79961 0.79036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 9.81 71.98 0.71 -4.63 16 2 C -0.10 -4.73 5.24 30.59 0.16 -4.57 16 3 C 0.11 5.48 2.19 29.85 0.07 5.54 16 4 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.54 -28.67 8.22 25.60 0.21 -28.46 16 6 H 0.05 2.92 7.67 -2.91 -0.02 2.90 16 7 C 0.03 1.51 5.29 84.66 0.45 1.95 16 8 N -0.91 -49.51 11.29 21.45 0.24 -49.27 16 9 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 13 S -0.30 -12.77 19.80 -56.49 -1.12 -13.89 16 14 C 0.00 0.17 6.32 71.23 0.45 0.62 16 15 C 0.01 0.36 6.58 24.83 0.16 0.52 16 16 C -0.18 -4.52 10.81 22.19 0.24 -4.28 16 17 C -0.16 -3.68 10.88 22.23 0.24 -3.43 16 18 C 0.00 0.07 7.93 67.00 0.53 0.61 16 19 Cl 0.03 0.73 29.30 -2.72 -0.08 0.65 16 20 O -0.19 -6.46 10.65 -3.16 -0.03 -6.49 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.06 2.12 7.01 -2.39 -0.02 2.10 16 23 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 24 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.08 4.23 5.95 -2.39 -0.01 4.22 16 26 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 27 H 0.09 3.34 7.90 -2.39 -0.02 3.32 16 28 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -57.88 288.85 5.39 -52.49 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.13 Total: 8.05 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 3.22 Total: -36.13 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.24 Total: -49.27 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.03 Total: -6.49 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -12.77 SS G_CDS: -1.12 Total: -13.89 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal Total: -57.88 5.39 -52.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757169092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.814 kcal (2) G-P(sol) polarization free energy of solvation -57.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds