Wall clock time and date at job start Mon Mar 30 2020 07:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47325 * 270.00491 * 3 2 1 5 5 H 1.48498 * 109.47067 * 30.00529 * 3 2 1 6 6 H 1.48501 * 109.46997 * 150.00188 * 3 2 1 7 7 C 1.37877 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00568 * 359.97438 * 7 2 1 9 9 C 1.50710 * 119.99666 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46904 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46832 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.46960 * 179.97438 * 11 10 9 13 13 C 1.81408 * 102.99810 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46846 * 180.02562 * 13 12 11 15 15 C 1.34491 * 125.77905 * 90.00160 * 14 13 12 16 16 C 1.41406 * 106.85237 * 179.97438 * 15 14 13 17 17 C 1.34645 * 106.82966 * 0.02562 * 16 15 14 18 18 Cl 1.73597 * 125.80055 * 180.02562 * 17 16 15 19 19 O 1.34309 * 108.39767 * 359.73538 * 17 16 15 20 20 H 0.97000 * 120.00000 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46877 * 59.99502 * 9 7 2 22 22 H 1.08997 * 109.46864 * 299.99798 * 9 7 2 23 23 H 1.09002 * 109.46921 * 60.00376 * 10 9 7 24 24 H 1.08997 * 109.47379 * 299.99708 * 10 9 7 25 25 H 1.09005 * 109.46565 * 60.00151 * 11 10 9 26 26 H 1.08997 * 109.47094 * 300.00120 * 11 10 9 27 27 H 1.09000 * 109.46602 * 60.00357 * 13 12 11 28 28 H 1.09000 * 109.47286 * 300.00088 * 13 12 11 29 29 H 1.08000 * 126.57024 * 0.02562 * 15 14 13 30 30 H 1.07999 * 126.57833 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6525 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5516 -2.6366 -0.0022 12 16 6.1562 -4.3468 -0.0013 13 6 7.9587 -4.1423 -0.0022 14 6 8.6179 -5.4975 -0.0021 15 6 8.9615 -6.2049 -1.0932 16 6 9.5473 -7.4073 -0.6345 17 6 9.5261 -7.3629 0.7110 18 17 10.1268 -8.5940 1.7773 19 8 8.9670 -6.2013 1.0880 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 3.6579 -3.1506 -0.8908 24 1 3.6586 -3.1502 0.8892 25 1 5.9155 -2.1224 0.8873 26 1 5.9142 -2.1231 -0.8927 27 1 8.2621 -3.5903 0.8874 28 1 8.2615 -3.5914 -0.8926 29 1 8.8181 -5.9104 -2.1224 30 1 9.9369 -8.2077 -1.2462 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757169643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:23 Heat of formation + Delta-G solvation = -3.767708 kcal Electronic energy + Delta-G solvation = -13932.228155 eV Core-core repulsion = 11267.208368 eV Total energy + Delta-G solvation = -2665.019786 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.97983 -37.33598 -34.64146 -33.67249 -32.15006 -32.11058 -28.15429 -26.81321 -23.26271 -22.32999 -21.04889 -20.20025 -18.10967 -16.95139 -16.77729 -15.92181 -15.26777 -14.90391 -14.40932 -14.12560 -13.70144 -13.58385 -13.27704 -12.81606 -12.58344 -12.40725 -12.12761 -12.05643 -11.64820 -11.29406 -10.90209 -10.37921 -10.15146 -9.95278 -9.78776 -9.62650 -9.24904 -8.64478 -8.57413 -7.63701 -6.07204 -4.06014 0.78907 0.92496 1.73491 2.34826 2.63209 3.03533 3.27625 3.35356 3.37583 4.31183 4.41627 4.55495 4.77355 5.03952 5.21485 5.25064 5.31960 5.39438 5.45281 5.48422 5.90828 5.99667 6.35289 6.44671 6.57361 6.76573 7.20428 7.32748 7.73591 8.50026 8.97718 9.54278 11.06233 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.059281 B = 0.002921 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.212254 B = 9584.733642 C = 9698.035227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.088 4.088 11 C -0.081 4.081 12 S -0.250 6.250 13 C -0.018 4.018 14 C 0.027 3.973 15 C -0.182 4.182 16 C -0.173 4.173 17 C 0.025 3.975 18 Cl 0.024 6.976 19 O -0.163 6.163 20 H 0.263 0.737 21 H 0.017 0.983 22 H 0.013 0.987 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.162 0.838 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.787 -12.915 -0.565 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.127 4.127 11 C -0.229 4.229 12 S -0.020 6.020 13 C -0.165 4.165 14 C -0.025 4.025 15 C -0.204 4.204 16 C -0.193 4.193 17 C -0.053 4.053 18 Cl 0.052 6.948 19 O -0.061 6.061 20 H 0.073 0.927 21 H 0.036 0.964 22 H 0.031 0.969 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.133 0.867 29 H 0.179 0.821 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 22.046 -13.729 -0.152 25.972 hybrid contribution 1.141 1.798 0.052 2.130 sum 23.187 -11.931 -0.101 26.077 Atomic orbital electron populations 1.69916 1.06302 1.26938 1.50934 1.25033 0.94750 0.99176 0.94535 0.86765 0.80317 0.83613 0.78493 1.20262 1.21337 1.19057 1.21106 0.89254 0.94621 1.51023 0.90887 1.19572 0.97347 0.91265 0.96426 1.21287 0.88162 1.00645 1.02575 1.23727 1.02328 0.92222 1.04607 1.87355 1.00661 1.15868 1.98104 1.21722 0.95875 0.91767 1.07154 1.21484 1.02411 0.94969 0.83592 1.21593 1.04259 0.94543 0.99982 1.21544 1.05556 1.00592 0.91584 1.22402 1.05768 0.86777 0.90331 1.98431 1.84734 1.45033 1.66556 1.83937 1.60984 1.25737 1.35412 0.92670 0.96443 0.96858 0.91671 0.91666 0.90256 0.90190 0.88133 0.86730 0.82071 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.16 4.04 -27.88 -0.11 -0.27 16 10 C -0.09 -1.70 5.16 -26.73 -0.14 -1.84 16 11 C -0.08 -1.23 5.94 37.16 0.22 -1.01 16 12 S -0.25 -3.59 21.72 -107.50 -2.33 -5.92 16 13 C -0.02 -0.19 6.47 36.01 0.23 0.04 16 14 C 0.03 0.30 6.58 -35.63 -0.23 0.07 16 15 C -0.18 -1.79 10.81 -39.70 -0.43 -2.22 16 16 C -0.17 -1.63 10.88 -39.65 -0.43 -2.06 16 17 C 0.02 0.26 7.93 29.46 0.23 0.50 16 18 Cl 0.02 0.21 29.30 -51.86 -1.52 -1.31 16 19 O -0.16 -2.04 10.65 5.52 0.06 -1.98 16 20 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 21 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 22 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 292.84 15.07 4.41 4.41 Total: -1.00 -30.85 292.84 -8.10 -38.95 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -3.73 Total: -3.77 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.09 Total: -20.10 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.01 kcal Atomic # 8 Polarization: -2.04 SS G_CDS: 0.06 Total: -1.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.33 Total: -5.92 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -1.52 Total: -1.31 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.85 -8.10 -38.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757169643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.181 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds