Wall clock time and date at job start Mon Mar 30 2020 07:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47325 * 270.00491 * 3 2 1 5 5 H 1.48498 * 109.47067 * 30.00529 * 3 2 1 6 6 H 1.48501 * 109.46997 * 150.00188 * 3 2 1 7 7 C 1.37877 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00568 * 359.97438 * 7 2 1 9 9 C 1.50710 * 119.99666 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46904 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46832 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.46960 * 179.97438 * 11 10 9 13 13 C 1.81408 * 102.99810 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46846 * 180.02562 * 13 12 11 15 15 C 1.34491 * 125.77905 * 90.00160 * 14 13 12 16 16 C 1.41406 * 106.85237 * 179.97438 * 15 14 13 17 17 C 1.34645 * 106.82966 * 0.02562 * 16 15 14 18 18 Cl 1.73597 * 125.80055 * 180.02562 * 17 16 15 19 19 O 1.34309 * 108.39767 * 359.73538 * 17 16 15 20 20 H 0.97000 * 120.00000 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46877 * 59.99502 * 9 7 2 22 22 H 1.08997 * 109.46864 * 299.99798 * 9 7 2 23 23 H 1.09002 * 109.46921 * 60.00376 * 10 9 7 24 24 H 1.08997 * 109.47379 * 299.99708 * 10 9 7 25 25 H 1.09005 * 109.46565 * 60.00151 * 11 10 9 26 26 H 1.08997 * 109.47094 * 300.00120 * 11 10 9 27 27 H 1.09000 * 109.46602 * 60.00357 * 13 12 11 28 28 H 1.09000 * 109.47286 * 300.00088 * 13 12 11 29 29 H 1.08000 * 126.57024 * 0.02562 * 15 14 13 30 30 H 1.07999 * 126.57833 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6525 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5516 -2.6366 -0.0022 12 16 6.1562 -4.3468 -0.0013 13 6 7.9587 -4.1423 -0.0022 14 6 8.6179 -5.4975 -0.0021 15 6 8.9615 -6.2049 -1.0932 16 6 9.5473 -7.4073 -0.6345 17 6 9.5261 -7.3629 0.7110 18 17 10.1268 -8.5940 1.7773 19 8 8.9670 -6.2013 1.0880 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 3.6579 -3.1506 -0.8908 24 1 3.6586 -3.1502 0.8892 25 1 5.9155 -2.1224 0.8873 26 1 5.9142 -2.1231 -0.8927 27 1 8.2621 -3.5903 0.8874 28 1 8.2615 -3.5914 -0.8926 29 1 8.8181 -5.9104 -2.1224 30 1 9.9369 -8.2077 -1.2462 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757169643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:22 Heat of formation + Delta-G solvation = -20.963557 kcal Electronic energy + Delta-G solvation = -13932.973823 eV Core-core repulsion = 11267.208368 eV Total energy + Delta-G solvation = -2665.765454 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.76457 -38.05382 -36.39134 -34.45640 -34.15262 -32.92040 -29.92322 -27.65001 -25.03643 -23.09606 -22.15927 -21.62090 -19.05778 -18.78477 -17.75954 -17.04616 -16.33737 -16.31890 -15.98308 -15.09840 -15.00634 -14.47190 -14.35108 -14.01419 -13.98079 -13.66695 -13.28871 -13.19596 -12.95076 -12.65353 -12.38254 -11.83388 -11.66138 -11.56604 -11.36104 -11.05149 -10.94488 -10.76116 -9.44420 -8.73377 -8.28847 -6.34302 -0.05856 0.14953 0.86984 1.37994 1.40634 1.45405 1.52335 1.70271 2.25970 2.37587 3.06546 3.55613 3.86033 4.02452 4.04695 4.06122 4.31487 4.48101 4.56433 4.70850 4.77542 4.82725 4.85575 5.00610 5.30415 5.45410 5.53673 5.65029 5.79861 6.27688 6.74016 7.30303 8.88348 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.059281 B = 0.002921 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.212254 B = 9584.733642 C = 9698.035227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.538 4.538 8 H 0.026 0.974 9 C -0.004 4.004 10 C -0.081 4.081 11 C -0.068 4.068 12 S -0.294 6.294 13 C -0.001 4.001 14 C 0.003 3.997 15 C -0.175 4.175 16 C -0.169 4.169 17 C 0.007 3.993 18 Cl 0.032 6.968 19 O -0.186 6.186 20 H 0.267 0.733 21 H 0.026 0.974 22 H 0.028 0.972 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.143 0.857 29 H 0.184 0.816 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.771 -12.098 -1.248 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.576 4.576 8 H 0.045 0.955 9 C -0.043 4.043 10 C -0.120 4.120 11 C -0.216 4.216 12 S -0.065 6.065 13 C -0.147 4.147 14 C -0.048 4.048 15 C -0.197 4.197 16 C -0.189 4.189 17 C -0.070 4.070 18 Cl 0.061 6.939 19 O -0.085 6.085 20 H 0.075 0.925 21 H 0.045 0.955 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.201 0.799 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 25.038 -12.928 -0.836 28.191 hybrid contribution 0.210 1.364 0.265 1.405 sum 25.248 -11.564 -0.570 27.776 Atomic orbital electron populations 1.70089 1.08548 1.28276 1.52585 1.26119 0.95682 1.03901 0.93957 0.85559 0.79569 0.77551 0.79355 1.18886 1.21257 1.16344 1.21507 0.92333 0.93044 1.50680 0.95513 1.19503 0.93655 0.93938 0.97227 1.21048 0.91674 0.98017 1.01237 1.23447 0.98812 0.93100 1.06223 1.87506 1.05205 1.15491 1.98291 1.21781 0.91894 0.92003 1.09066 1.21720 1.03583 0.95623 0.83845 1.21972 1.02873 0.94143 1.00691 1.21936 1.04663 1.01052 0.91281 1.22779 1.06213 0.86741 0.91247 1.98430 1.84581 1.44459 1.66424 1.83906 1.61673 1.26528 1.36388 0.92473 0.95534 0.95355 0.92922 0.93349 0.88977 0.88184 0.87166 0.83894 0.79905 0.79614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 2 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 3 Si 0.96 43.36 27.47 68.60 1.88 45.24 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 7 C -0.54 -31.20 9.66 25.60 0.25 -30.96 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 9 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 10 C -0.08 -3.11 5.16 30.59 0.16 -2.96 16 11 C -0.07 -1.92 5.94 71.98 0.43 -1.49 16 12 S -0.29 -8.02 21.72 -56.49 -1.23 -9.25 16 13 C 0.00 -0.01 6.47 71.24 0.46 0.45 16 14 C 0.00 0.06 6.58 24.83 0.16 0.23 16 15 C -0.17 -2.98 10.81 22.19 0.24 -2.74 16 16 C -0.17 -2.79 10.88 22.23 0.24 -2.55 16 17 C 0.01 0.14 7.93 67.00 0.53 0.68 16 18 Cl 0.03 0.54 29.30 -2.72 -0.08 0.46 16 19 O -0.19 -4.44 10.65 -3.17 -0.03 -4.47 16 20 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 21 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 22 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 23 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -68.62 292.84 4.97 -63.65 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.07 Total: 3.47 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 3.05 Total: -38.96 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.30 Total: -60.14 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.03 Total: -4.47 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.23 Total: -9.25 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -0.08 Total: 0.46 kcal Total: -68.62 4.97 -63.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757169643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.682 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds