Wall clock time and date at job start Mon Mar 30 2020 06:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99834 * 2 1 4 4 C 1.53006 * 109.47213 * 124.99769 * 3 2 1 5 5 C 1.53005 * 109.46983 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46730 * 55.00708 * 5 4 3 7 7 C 1.53003 * 109.46556 * 175.00331 * 5 4 3 8 8 N 1.46500 * 109.47172 * 295.00001 * 5 4 3 9 9 C 1.39676 * 119.99636 * 154.99984 * 8 5 4 10 10 C 1.38906 * 120.07135 * 179.97438 * 9 8 5 11 11 C 1.38111 * 119.92343 * 180.02562 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00151 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99599 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46983 * 90.00251 * 18 16 14 20 20 H 1.48500 * 109.46872 * 210.00176 * 18 16 14 21 21 H 1.48505 * 109.46970 * 330.00218 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 H 1.08003 * 119.99667 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00216 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00216 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47277 * 4.99838 * 3 2 1 28 28 H 1.08999 * 109.47362 * 245.00005 * 3 2 1 29 29 H 1.09003 * 109.46721 * 60.00323 * 4 3 2 30 30 H 1.08999 * 109.47150 * 300.00366 * 4 3 2 31 31 H 1.08998 * 109.46892 * 180.02562 * 7 5 4 32 32 H 1.09005 * 109.47269 * 299.99526 * 7 5 4 33 33 H 1.08996 * 109.47541 * 60.00263 * 7 5 4 34 34 H 0.96995 * 120.00066 * 335.00579 * 8 5 4 35 35 H 1.07999 * 120.03932 * 0.04675 * 10 9 8 36 36 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 38 38 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 39 39 H 0.96999 * 119.99542 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 41 41 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6580 1.1813 6 1 3.0923 3.4866 1.1811 7 6 4.6801 2.7390 2.4305 8 7 4.6427 2.7349 -0.0149 9 6 5.0197 3.9796 -0.5246 10 6 5.8188 4.0543 -1.6583 11 6 6.1902 5.2866 -2.1594 12 6 5.7722 6.4450 -1.5303 13 6 6.1851 7.7877 -2.0760 14 6 5.1610 8.2602 -3.0755 15 1 4.2974 7.6494 -3.2934 16 6 5.3260 9.4726 -3.7110 17 7 4.4326 9.8846 -4.5836 18 14 6.8188 10.5299 -3.3324 19 1 7.9241 10.1755 -4.2586 20 1 6.4676 11.9623 -3.5060 21 1 7.2512 10.2924 -1.9317 22 6 4.9720 6.3742 -0.4047 23 6 4.5970 5.1452 0.1016 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 3.7400 0.5066 1.0921 30 1 2.4772 1.2356 2.1131 31 1 5.2250 3.6830 2.4305 32 1 4.0534 2.6818 3.3206 33 1 5.3881 1.9104 2.4308 34 1 4.9385 1.9217 -0.4529 35 1 6.1490 3.1500 -2.1477 36 1 6.8118 5.3454 -3.0406 37 1 6.2541 8.5062 -1.2592 38 1 7.1555 7.6986 -2.5645 39 1 4.5486 10.7377 -5.0304 40 1 4.6441 7.2809 0.0818 41 1 3.9760 5.0905 0.9835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903294541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:23 Heat of formation + Delta-G solvation = 24.258512 kcal Electronic energy + Delta-G solvation = -18399.576603 eV Core-core repulsion = 15664.836955 eV Total energy + Delta-G solvation = -2734.739649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.19098 -37.31616 -35.05798 -33.23358 -31.95579 -30.25540 -29.85866 -29.00632 -26.39309 -24.01738 -22.55857 -22.44098 -20.56218 -19.99778 -19.71856 -17.15035 -16.68033 -15.94044 -15.52913 -14.79896 -14.49055 -14.11771 -13.91337 -13.71598 -13.47617 -13.02531 -12.95696 -12.62479 -12.42422 -12.28540 -12.02043 -11.80139 -11.51512 -11.44496 -11.32791 -10.99267 -10.78646 -10.57201 -10.20733 -10.09338 -9.87674 -9.57638 -9.36797 -9.04745 -8.51315 -8.23799 -6.72407 -6.00300 -3.98060 2.05061 2.11908 2.35683 3.33307 3.40707 3.44599 3.65120 4.43489 4.47892 4.60159 4.76637 4.91803 4.92907 5.12694 5.27327 5.32158 5.44553 5.49986 5.53984 5.55151 5.61902 5.66042 5.79059 5.87683 5.99643 6.00894 6.10355 6.20659 6.28167 6.39875 6.43637 6.54915 6.67966 6.84427 7.10360 7.13075 7.23524 7.46849 7.77781 7.77960 7.86916 8.08083 8.59800 9.06698 9.61052 11.12939 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.003700 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.971753 B = 7566.143262 C = 8057.937715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.095 4.095 4 C -0.119 4.119 5 C 0.151 3.849 6 H 0.077 0.923 7 C -0.169 4.169 8 N -0.750 5.750 9 C 0.188 3.812 10 C -0.195 4.195 11 C -0.077 4.077 12 C -0.082 4.082 13 C 0.020 3.980 14 C -0.509 4.509 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.078 4.078 23 C -0.196 4.196 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.392 0.608 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.024 0.976 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.115 0.885 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -18.549 12.777 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.157 4.157 5 C 0.045 3.955 6 H 0.095 0.905 7 C -0.227 4.227 8 N -0.383 5.383 9 C 0.089 3.911 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.084 4.084 13 C -0.017 4.017 14 C -0.547 4.547 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.096 4.096 23 C -0.218 4.218 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.089 -18.350 12.818 22.482 hybrid contribution 0.731 0.276 -0.172 0.800 sum -1.358 -18.074 12.647 22.101 Atomic orbital electron populations 1.23867 0.96048 1.01791 1.01810 1.23003 0.96059 0.98558 0.99393 1.20777 0.98175 0.95110 0.99207 1.21810 0.97891 0.97168 0.98848 1.20815 0.91865 0.97686 0.85161 0.90457 1.22298 1.00385 1.02619 0.97438 1.44522 1.58061 1.04828 1.30844 1.17611 0.94947 0.85364 0.93212 1.20448 1.04990 0.97740 0.98517 1.20794 0.98965 0.91344 0.98463 1.20030 0.97577 0.96236 0.94537 1.18699 0.96844 0.89912 0.96289 1.21030 1.07913 1.04186 1.21539 0.90911 1.25022 0.96215 0.97507 0.94719 1.69911 1.35303 1.21363 1.27663 0.86807 0.83538 0.79678 0.79494 1.20261 1.21391 1.18921 1.20815 0.96521 0.96401 0.95891 1.20535 1.06818 0.91557 1.02913 0.88731 0.88537 0.87642 0.91363 0.90465 0.91592 0.90774 0.91955 0.92335 0.92692 0.77429 0.87383 0.86612 0.95829 0.96268 0.92751 0.86660 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 14.32 29.01 0.42 -1.19 16 2 C -0.15 -1.26 9.52 -36.03 -0.34 -1.60 16 3 C -0.10 -0.86 5.54 -27.88 -0.15 -1.01 16 4 C -0.12 -0.96 4.74 -26.73 -0.13 -1.08 16 5 C 0.15 1.50 2.27 -67.93 -0.15 1.35 16 6 H 0.08 0.86 6.48 -51.93 -0.34 0.52 16 7 C -0.17 -1.58 9.43 37.16 0.35 -1.23 16 8 N -0.75 -8.87 4.70 -52.16 -0.25 -9.12 16 9 C 0.19 2.95 6.64 -83.79 -0.56 2.40 16 10 C -0.19 -3.26 9.90 -39.38 -0.39 -3.65 16 11 C -0.08 -1.51 9.69 -39.61 -0.38 -1.89 16 12 C -0.08 -1.78 5.07 -104.59 -0.53 -2.31 16 13 C 0.02 0.49 4.17 -29.04 -0.12 0.36 16 14 C -0.51 -14.78 9.65 -34.44 -0.33 -15.11 16 15 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 18 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 22 C -0.08 -1.52 9.69 -39.61 -0.38 -1.91 16 23 C -0.20 -3.30 8.85 -39.38 -0.35 -3.64 16 24 H 0.09 0.65 8.06 -52.48 -0.42 0.23 16 25 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 26 H 0.11 0.77 8.06 -52.49 -0.42 0.34 16 27 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 28 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.39 4.05 8.61 -40.82 -0.35 3.70 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.02 0.58 7.14 -51.93 -0.37 0.20 16 38 H 0.02 0.46 7.51 -51.93 -0.39 0.07 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.11 1.62 6.12 -52.49 -0.32 1.30 16 LS Contribution 337.93 15.07 5.09 5.09 Total: -1.00 -31.13 337.93 -8.98 -40.12 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.78 Total: 2.84 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -3.16 Total: -28.67 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.53 Total: -36.51 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.13 -8.98 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.376 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds