Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99834 * 2 1 4 4 C 1.53006 * 109.47213 * 124.99769 * 3 2 1 5 5 C 1.53005 * 109.46983 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46730 * 55.00708 * 5 4 3 7 7 C 1.53003 * 109.46556 * 175.00331 * 5 4 3 8 8 N 1.46500 * 109.47172 * 295.00001 * 5 4 3 9 9 C 1.39676 * 119.99636 * 154.99984 * 8 5 4 10 10 C 1.38906 * 120.07135 * 179.97438 * 9 8 5 11 11 C 1.38111 * 119.92343 * 180.02562 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00151 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99599 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46983 * 90.00251 * 18 16 14 20 20 H 1.48500 * 109.46872 * 210.00176 * 18 16 14 21 21 H 1.48505 * 109.46970 * 330.00218 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 H 1.08003 * 119.99667 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00216 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00216 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47277 * 4.99838 * 3 2 1 28 28 H 1.08999 * 109.47362 * 245.00005 * 3 2 1 29 29 H 1.09003 * 109.46721 * 60.00323 * 4 3 2 30 30 H 1.08999 * 109.47150 * 300.00366 * 4 3 2 31 31 H 1.08998 * 109.46892 * 180.02562 * 7 5 4 32 32 H 1.09005 * 109.47269 * 299.99526 * 7 5 4 33 33 H 1.08996 * 109.47541 * 60.00263 * 7 5 4 34 34 H 0.96995 * 120.00066 * 335.00579 * 8 5 4 35 35 H 1.07999 * 120.03932 * 0.04675 * 10 9 8 36 36 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 38 38 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 39 39 H 0.96999 * 119.99542 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 41 41 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6580 1.1813 6 1 3.0923 3.4866 1.1811 7 6 4.6801 2.7390 2.4305 8 7 4.6427 2.7349 -0.0149 9 6 5.0197 3.9796 -0.5246 10 6 5.8188 4.0543 -1.6583 11 6 6.1902 5.2866 -2.1594 12 6 5.7722 6.4450 -1.5303 13 6 6.1851 7.7877 -2.0760 14 6 5.1610 8.2602 -3.0755 15 1 4.2974 7.6494 -3.2934 16 6 5.3260 9.4726 -3.7110 17 7 4.4326 9.8846 -4.5836 18 14 6.8188 10.5299 -3.3324 19 1 7.9241 10.1755 -4.2586 20 1 6.4676 11.9623 -3.5060 21 1 7.2512 10.2924 -1.9317 22 6 4.9720 6.3742 -0.4047 23 6 4.5970 5.1452 0.1016 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 3.7400 0.5066 1.0921 30 1 2.4772 1.2356 2.1131 31 1 5.2250 3.6830 2.4305 32 1 4.0534 2.6818 3.3206 33 1 5.3881 1.9104 2.4308 34 1 4.9385 1.9217 -0.4529 35 1 6.1490 3.1500 -2.1477 36 1 6.8118 5.3454 -3.0406 37 1 6.2541 8.5062 -1.2592 38 1 7.1555 7.6986 -2.5645 39 1 4.5486 10.7377 -5.0304 40 1 4.6441 7.2809 0.0818 41 1 3.9760 5.0905 0.9835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903294541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = 7.526632 kcal Electronic energy + Delta-G solvation = -18400.302152 eV Core-core repulsion = 15664.836955 eV Total energy + Delta-G solvation = -2735.465197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45600 -38.34838 -36.04012 -35.01557 -33.44048 -31.68161 -31.33124 -29.78358 -28.02916 -24.92657 -24.16078 -23.79665 -21.83078 -21.05612 -20.56797 -18.92739 -18.32826 -16.96276 -16.59047 -16.18474 -15.82066 -15.52458 -15.13859 -14.75164 -14.57429 -14.41107 -14.18181 -14.04611 -13.75920 -13.44659 -13.40402 -13.10155 -12.81062 -12.53066 -12.38614 -12.16165 -11.96542 -11.79160 -11.70462 -11.57262 -11.47751 -11.41408 -10.76247 -10.59067 -10.15251 -9.66657 -8.28026 -8.01174 -6.31323 0.68858 0.90471 1.36919 1.38875 1.42338 1.51535 2.37511 2.62871 3.06820 3.15176 3.72645 4.05401 4.10887 4.20769 4.23470 4.29098 4.44783 4.48418 4.57601 4.66297 4.74926 4.77463 4.83981 4.88896 4.97980 5.02206 5.09233 5.13129 5.14228 5.26016 5.31824 5.38008 5.42097 5.55369 5.61746 5.72350 5.77098 5.92003 6.08654 6.17940 6.32583 6.62348 6.75663 7.02573 7.31996 8.89550 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.003700 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.971753 B = 7566.143262 C = 8057.937715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.095 4.095 4 C -0.109 4.109 5 C 0.147 3.853 6 H 0.066 0.934 7 C -0.164 4.164 8 N -0.736 5.736 9 C 0.204 3.796 10 C -0.196 4.196 11 C -0.089 4.089 12 C -0.125 4.125 13 C 0.028 3.972 14 C -0.517 4.517 15 H 0.025 0.975 16 C 0.004 3.996 17 N -0.952 5.952 18 Si 0.952 3.048 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.247 1.247 22 C -0.090 4.090 23 C -0.198 4.198 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.403 0.597 35 H 0.137 0.863 36 H 0.114 0.886 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.267 0.733 40 H 0.111 0.889 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -20.562 14.598 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.175 4.175 3 C -0.133 4.133 4 C -0.146 4.146 5 C 0.041 3.959 6 H 0.085 0.915 7 C -0.223 4.223 8 N -0.368 5.368 9 C 0.102 3.898 10 C -0.218 4.218 11 C -0.107 4.107 12 C -0.127 4.127 13 C -0.009 4.009 14 C -0.555 4.555 15 H 0.043 0.957 16 C -0.192 4.192 17 N -0.593 5.593 18 Si 0.775 3.225 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.171 1.171 22 C -0.108 4.108 23 C -0.220 4.220 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.137 0.863 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.239 0.761 35 H 0.155 0.845 36 H 0.132 0.868 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.129 0.871 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.139 -20.419 14.666 25.166 hybrid contribution 0.284 0.725 -0.706 1.051 sum -0.854 -19.693 13.961 24.155 Atomic orbital electron populations 1.24012 0.96257 1.02236 1.01558 1.23077 0.96146 0.98659 0.99582 1.20750 0.98139 0.95237 0.99145 1.21738 0.97699 0.96219 0.98981 1.20986 0.91666 0.98621 0.84584 0.91546 1.22244 1.00470 1.01924 0.97637 1.44615 1.57242 1.03824 1.31086 1.17692 0.93306 0.86546 0.92303 1.20678 1.04708 0.97655 0.98788 1.20878 0.99345 0.91984 0.98529 1.19895 1.00697 0.95471 0.96606 1.18528 0.95542 0.91836 0.95037 1.21270 1.07580 1.03896 1.22714 0.95682 1.26023 0.99817 0.99063 0.94340 1.70071 1.37824 1.22226 1.29187 0.85626 0.79147 0.77369 0.80338 1.18968 1.20794 1.17059 1.20878 0.96624 0.97618 0.95726 1.20701 1.06844 0.90923 1.03572 0.87480 0.89062 0.86264 0.92621 0.91596 0.90154 0.89409 0.93753 0.90494 0.91918 0.76096 0.84503 0.86805 0.95755 0.95798 0.92457 0.87063 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.95 14.32 67.78 0.97 -1.98 16 2 C -0.16 -2.25 9.52 25.64 0.24 -2.00 16 3 C -0.10 -1.52 5.54 29.85 0.17 -1.35 16 4 C -0.11 -1.39 4.74 30.60 0.14 -1.25 16 5 C 0.15 2.52 2.27 44.99 0.10 2.62 16 6 H 0.07 1.33 6.48 -2.39 -0.02 1.31 16 7 C -0.16 -2.58 9.43 71.98 0.68 -1.90 16 8 N -0.74 -15.40 4.70 -318.95 -1.50 -16.90 16 9 C 0.20 6.04 6.64 38.21 0.25 6.29 16 10 C -0.20 -6.27 9.90 22.40 0.22 -6.05 16 11 C -0.09 -3.49 9.69 22.25 0.22 -3.28 16 12 C -0.12 -5.54 5.07 -19.84 -0.10 -5.64 16 13 C 0.03 1.40 4.17 29.10 0.12 1.52 16 14 C -0.52 -31.27 9.65 25.60 0.25 -31.03 16 15 H 0.02 1.69 7.98 -2.91 -0.02 1.67 16 16 C 0.00 0.24 5.47 84.66 0.46 0.70 16 17 N -0.95 -61.38 13.96 21.45 0.30 -61.09 16 18 Si 0.95 45.39 27.47 68.60 1.88 47.28 16 19 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 22 C -0.09 -3.58 9.69 22.25 0.22 -3.36 16 23 C -0.20 -6.48 8.85 22.40 0.20 -6.28 16 24 H 0.11 1.26 8.06 -2.91 -0.02 1.23 16 25 H 0.09 1.39 7.84 -2.91 -0.02 1.37 16 26 H 0.12 1.38 8.06 -2.91 -0.02 1.36 16 27 H 0.06 1.02 7.79 -2.39 -0.02 1.00 16 28 H 0.07 1.20 7.75 -2.39 -0.02 1.18 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.87 7.71 -2.39 -0.02 0.85 16 32 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.40 6.95 8.61 -92.71 -0.80 6.15 16 35 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.02 1.19 7.14 -2.39 -0.02 1.18 16 38 H 0.02 1.15 7.51 -2.39 -0.02 1.14 16 39 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 40 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.13 3.67 6.12 -2.91 -0.02 3.65 16 Total: -1.00 -69.70 337.93 4.96 -64.75 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.13 Total: 18.96 kcal Atomic # 6 Polarization: -57.14 SS G_CDS: 4.14 Total: -53.00 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.20 Total: -77.98 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -69.70 4.96 -64.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.275 kcal (2) G-P(sol) polarization free energy of solvation -69.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds