Wall clock time and date at job start Mon Mar 30 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 110.43771 * 2 1 4 4 C 1.54892 * 110.48722 * 122.53987 * 2 1 3 5 5 C 1.54891 * 102.74996 * 156.61936 * 4 2 1 6 6 C 1.54271 * 104.19461 * 322.06181 * 5 4 2 7 7 H 1.09000 * 110.02976 * 264.27442 * 6 5 4 8 8 N 1.46499 * 110.03297 * 142.89312 * 6 5 4 9 9 C 1.39681 * 119.99721 * 87.08949 * 8 6 5 10 10 C 1.38913 * 120.07057 * 179.97438 * 9 8 6 11 11 C 1.38106 * 119.92415 * 180.02562 * 10 9 8 12 12 C 1.38285 * 120.07208 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.92419 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47064 * 89.99659 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.38286 * 120.15383 * 0.26802 * 12 11 10 23 23 C 1.38108 * 120.06868 * 359.45265 * 22 12 11 24 24 C 1.53868 * 106.64121 * 23.58253 * 6 5 4 25 25 H 1.09004 * 109.47225 * 298.91297 * 1 2 3 26 26 H 1.09003 * 109.46974 * 58.90920 * 1 2 3 27 27 H 1.08994 * 109.47205 * 178.91358 * 1 2 3 28 28 H 1.08999 * 110.75289 * 38.31069 * 4 2 1 29 29 H 1.08993 * 110.91795 * 275.00743 * 4 2 1 30 30 H 1.08998 * 110.48944 * 203.38004 * 5 4 2 31 31 H 1.08996 * 110.60006 * 80.78793 * 5 4 2 32 32 H 0.96999 * 120.00404 * 267.08987 * 8 6 5 33 33 H 1.07997 * 120.03863 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.96140 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47152 * 329.99751 * 13 12 11 36 36 H 1.09001 * 109.46980 * 209.99852 * 13 12 11 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.96544 * 179.70952 * 22 12 11 39 39 H 1.08005 * 120.03586 * 180.27157 * 23 22 12 40 40 H 1.09007 * 110.03266 * 119.31198 * 24 6 5 41 41 H 1.08995 * 110.03496 * 240.73857 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7804 1.2232 5 6 3.4907 -1.1970 0.7615 6 6 3.3165 -1.5414 -0.7321 7 1 3.1700 -2.6147 -0.8532 8 7 4.4942 -1.1076 -1.4878 9 6 5.5977 -1.9555 -1.6085 10 6 6.7150 -1.5459 -2.3251 11 6 7.8042 -2.3868 -2.4430 12 6 7.7831 -3.6354 -1.8490 13 6 8.9733 -4.5505 -1.9802 14 6 9.9265 -4.3016 -0.8398 15 1 9.6936 -3.5556 -0.0944 16 6 11.0955 -5.0269 -0.7476 17 7 11.3788 -5.9355 -1.6550 18 14 12.2767 -4.7187 0.6664 19 1 11.5870 -4.9846 1.9544 20 1 13.4495 -5.6204 0.5370 21 1 12.7328 -3.3059 0.6315 22 6 6.6701 -4.0486 -1.1400 23 6 5.5798 -3.2104 -1.0134 24 6 2.0697 -0.7813 -1.2171 25 1 -0.3634 0.4969 0.8996 26 1 -0.3633 0.5307 -0.8801 27 1 -0.3633 -1.0274 -0.0195 28 1 1.4580 -1.6583 1.4243 29 1 2.1250 -0.1383 2.1022 30 1 3.8316 -2.0706 1.3172 31 1 4.1915 -0.3712 0.8833 32 1 4.5077 -0.2317 -1.9043 33 1 6.7319 -0.5711 -2.7896 34 1 8.6730 -2.0692 -3.0003 35 1 9.4792 -4.3554 -2.9258 36 1 8.6388 -5.5876 -1.9544 37 1 12.2014 -6.4455 -1.5903 38 1 6.6551 -5.0263 -0.6813 39 1 4.7125 -3.5320 -0.4558 40 1 2.3408 -0.0896 -2.0148 41 1 1.3178 -1.4857 -1.5728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903298710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:53 Heat of formation + Delta-G solvation = -2.052150 kcal Electronic energy + Delta-G solvation = -18569.256802 eV Core-core repulsion = 15833.376237 eV Total energy + Delta-G solvation = -2735.880564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.45167 -38.11192 -34.85092 -32.89708 -31.09414 -30.11654 -29.88365 -28.21354 -25.93427 -24.86726 -22.77886 -22.09414 -20.59611 -20.10308 -19.61401 -17.15354 -16.20297 -16.09529 -15.12651 -14.92314 -14.67215 -14.02891 -13.83001 -13.60004 -13.31524 -12.89005 -12.86890 -12.68709 -12.31537 -12.14614 -11.83027 -11.36459 -11.19681 -11.13353 -11.12301 -10.94398 -10.75870 -10.72481 -10.58568 -10.49603 -10.02895 -9.69708 -9.37237 -8.95931 -8.34124 -8.17589 -6.69502 -5.94191 -3.98743 2.18229 2.43020 3.36726 3.40357 3.44064 3.70447 4.33984 4.40473 4.47768 4.59338 4.73835 5.08720 5.15273 5.26775 5.30999 5.35282 5.38119 5.40303 5.53068 5.60806 5.64658 5.64769 5.72896 5.86586 5.87248 6.02062 6.08624 6.13607 6.19437 6.25788 6.38693 6.55108 6.77620 6.92859 7.35962 7.36259 7.51713 7.66505 7.92788 8.01144 8.03023 8.13526 8.45030 9.06967 9.64457 11.14028 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038138 B = 0.003558 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.002528 B = 7868.020013 C = 8203.858291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.120 4.120 5 C -0.141 4.141 6 C 0.153 3.847 7 H 0.078 0.922 8 N -0.751 5.751 9 C 0.182 3.818 10 C -0.195 4.195 11 C -0.080 4.080 12 C -0.085 4.085 13 C 0.053 3.947 14 C -0.508 4.508 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.081 4.081 23 C -0.195 4.195 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.391 0.609 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.165 11.132 2.033 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.180 4.180 6 C 0.046 3.954 7 H 0.096 0.904 8 N -0.383 5.383 9 C 0.083 3.917 10 C -0.217 4.217 11 C -0.099 4.099 12 C -0.087 4.087 13 C 0.017 3.983 14 C -0.547 4.547 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.100 4.100 23 C -0.217 4.217 24 C -0.164 4.164 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.225 0.775 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.152 10.883 2.073 22.997 hybrid contribution 0.784 0.483 0.669 1.138 sum -19.367 11.367 2.741 22.623 Atomic orbital electron populations 1.21812 0.95060 1.01826 1.01494 1.21971 0.95349 0.99259 0.94961 0.90875 1.22548 0.96251 0.99746 0.97241 1.22921 0.96766 1.01917 0.96386 1.21417 0.84702 0.98889 0.90358 0.90363 1.44628 1.14766 1.18416 1.60528 1.17624 0.87420 0.90556 0.96109 1.20459 0.94473 1.00606 1.06174 1.20822 0.96675 0.93609 0.98777 1.20443 0.96329 0.95741 0.96151 1.18237 0.89425 0.93238 0.97434 1.21106 1.03700 1.20372 1.09483 0.92630 1.25019 0.97986 0.95199 0.96252 1.69952 1.25228 1.23795 1.34632 0.86633 0.80368 0.78088 0.82783 1.20233 1.21316 1.20242 1.20848 0.92508 0.98950 0.97679 1.20531 1.00033 0.94318 1.06850 1.22517 0.96887 0.99197 0.97812 0.92736 0.92819 0.92553 0.91402 0.91684 0.91402 0.91057 0.77452 0.87531 0.86675 0.95733 0.95736 0.92924 0.86734 0.87356 0.91327 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.12 37.15 0.34 -0.60 16 2 C -0.10 -0.74 3.46 -88.91 -0.31 -1.05 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -1.00 6.33 -24.74 -0.16 -1.15 16 5 C -0.14 -1.48 6.54 -25.07 -0.16 -1.64 16 6 C 0.15 1.65 2.92 -66.81 -0.19 1.45 16 7 H 0.08 0.91 6.48 -51.93 -0.34 0.58 16 8 N -0.75 -9.52 5.22 -51.09 -0.27 -9.78 16 9 C 0.18 3.00 6.65 -83.79 -0.56 2.44 16 10 C -0.19 -3.40 9.90 -39.38 -0.39 -3.79 16 11 C -0.08 -1.63 9.69 -39.61 -0.38 -2.02 16 12 C -0.09 -1.92 5.07 -104.59 -0.53 -2.45 16 13 C 0.05 1.42 5.10 -29.03 -0.15 1.28 16 14 C -0.51 -14.65 9.09 -34.44 -0.31 -14.96 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 18 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 C -0.08 -1.66 9.69 -39.61 -0.38 -2.04 16 23 C -0.20 -3.42 9.21 -39.38 -0.36 -3.78 16 24 C -0.13 -1.07 6.14 -25.56 -0.16 -1.23 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 28 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 32 H 0.39 4.33 8.32 -40.82 -0.34 3.99 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.11 1.66 6.24 -52.48 -0.33 1.33 16 40 H 0.07 0.57 7.61 -51.93 -0.40 0.17 16 41 H 0.07 0.58 7.82 -51.93 -0.41 0.17 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -30.37 331.52 -10.19 -40.56 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.82 Total: 1.61 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -3.81 Total: -28.02 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.47 Total: -36.13 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.37 -10.19 -40.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903298710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.505 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds