Wall clock time and date at job start Mon Mar 30 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 110.43771 * 2 1 4 4 C 1.54892 * 110.48722 * 122.53987 * 2 1 3 5 5 C 1.54891 * 102.74996 * 156.61936 * 4 2 1 6 6 C 1.54271 * 104.19461 * 322.06181 * 5 4 2 7 7 H 1.09000 * 110.02976 * 264.27442 * 6 5 4 8 8 N 1.46499 * 110.03297 * 142.89312 * 6 5 4 9 9 C 1.39681 * 119.99721 * 87.08949 * 8 6 5 10 10 C 1.38913 * 120.07057 * 179.97438 * 9 8 6 11 11 C 1.38106 * 119.92415 * 180.02562 * 10 9 8 12 12 C 1.38285 * 120.07208 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.92419 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47064 * 89.99659 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.38286 * 120.15383 * 0.26802 * 12 11 10 23 23 C 1.38108 * 120.06868 * 359.45265 * 22 12 11 24 24 C 1.53868 * 106.64121 * 23.58253 * 6 5 4 25 25 H 1.09004 * 109.47225 * 298.91297 * 1 2 3 26 26 H 1.09003 * 109.46974 * 58.90920 * 1 2 3 27 27 H 1.08994 * 109.47205 * 178.91358 * 1 2 3 28 28 H 1.08999 * 110.75289 * 38.31069 * 4 2 1 29 29 H 1.08993 * 110.91795 * 275.00743 * 4 2 1 30 30 H 1.08998 * 110.48944 * 203.38004 * 5 4 2 31 31 H 1.08996 * 110.60006 * 80.78793 * 5 4 2 32 32 H 0.96999 * 120.00404 * 267.08987 * 8 6 5 33 33 H 1.07997 * 120.03863 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.96140 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47152 * 329.99751 * 13 12 11 36 36 H 1.09001 * 109.46980 * 209.99852 * 13 12 11 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.96544 * 179.70952 * 22 12 11 39 39 H 1.08005 * 120.03586 * 180.27157 * 23 22 12 40 40 H 1.09007 * 110.03266 * 119.31198 * 24 6 5 41 41 H 1.08995 * 110.03496 * 240.73857 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7804 1.2232 5 6 3.4907 -1.1970 0.7615 6 6 3.3165 -1.5414 -0.7321 7 1 3.1700 -2.6147 -0.8532 8 7 4.4942 -1.1076 -1.4878 9 6 5.5977 -1.9555 -1.6085 10 6 6.7150 -1.5459 -2.3251 11 6 7.8042 -2.3868 -2.4430 12 6 7.7831 -3.6354 -1.8490 13 6 8.9733 -4.5505 -1.9802 14 6 9.9265 -4.3016 -0.8398 15 1 9.6936 -3.5556 -0.0944 16 6 11.0955 -5.0269 -0.7476 17 7 11.3788 -5.9355 -1.6550 18 14 12.2767 -4.7187 0.6664 19 1 11.5870 -4.9846 1.9544 20 1 13.4495 -5.6204 0.5370 21 1 12.7328 -3.3059 0.6315 22 6 6.6701 -4.0486 -1.1400 23 6 5.5798 -3.2104 -1.0134 24 6 2.0697 -0.7813 -1.2171 25 1 -0.3634 0.4969 0.8996 26 1 -0.3633 0.5307 -0.8801 27 1 -0.3633 -1.0274 -0.0195 28 1 1.4580 -1.6583 1.4243 29 1 2.1250 -0.1383 2.1022 30 1 3.8316 -2.0706 1.3172 31 1 4.1915 -0.3712 0.8833 32 1 4.5077 -0.2317 -1.9043 33 1 6.7319 -0.5711 -2.7896 34 1 8.6730 -2.0692 -3.0003 35 1 9.4792 -4.3554 -2.9258 36 1 8.6388 -5.5876 -1.9544 37 1 12.2014 -6.4455 -1.5903 38 1 6.6551 -5.0263 -0.6813 39 1 4.7125 -3.5320 -0.4558 40 1 2.3408 -0.0896 -2.0148 41 1 1.3178 -1.4857 -1.5728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903298710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:53 Heat of formation + Delta-G solvation = -17.514765 kcal Electronic energy + Delta-G solvation = -18569.927311 eV Core-core repulsion = 15833.376237 eV Total energy + Delta-G solvation = -2736.551074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59686 -39.24012 -36.20116 -34.83021 -32.36306 -31.64521 -30.99343 -29.32515 -27.53324 -25.70075 -24.67374 -23.44725 -21.79325 -21.16613 -20.52419 -18.50937 -18.32365 -17.06293 -16.74535 -16.03334 -15.88264 -15.51957 -14.98982 -14.53517 -14.48346 -14.39568 -14.10803 -13.92973 -13.72977 -13.35413 -13.18694 -12.86481 -12.67313 -12.51013 -12.43254 -12.17348 -11.87018 -11.69795 -11.59029 -11.54991 -11.41431 -11.38985 -11.27655 -10.57861 -10.51207 -9.67868 -8.29345 -7.93525 -6.30239 0.67727 0.89928 1.39407 1.42673 1.50979 2.41563 2.62139 3.12614 3.15936 3.65326 3.70376 3.92866 4.13057 4.22950 4.43187 4.46405 4.51298 4.55913 4.60694 4.70110 4.75091 4.77071 4.78895 4.88429 4.98108 5.07042 5.13325 5.17493 5.20787 5.32910 5.35309 5.37553 5.40670 5.41943 5.56589 5.57694 5.70760 5.81870 6.06906 6.23928 6.25937 6.62760 6.82932 7.00977 7.37984 8.92024 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038138 B = 0.003558 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.002528 B = 7868.020013 C = 8203.858291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.141 4.141 6 C 0.146 3.854 7 H 0.072 0.928 8 N -0.737 5.737 9 C 0.199 3.801 10 C -0.192 4.192 11 C -0.089 4.089 12 C -0.124 4.124 13 C 0.064 3.936 14 C -0.527 4.527 15 H 0.052 0.948 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.268 1.268 22 C -0.090 4.090 23 C -0.194 4.194 24 C -0.120 4.120 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.403 0.597 33 H 0.138 0.862 34 H 0.110 0.890 35 H -0.003 1.003 36 H -0.003 1.003 37 H 0.265 0.735 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.075 0.925 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.102 13.233 3.110 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.180 4.180 6 C 0.041 3.959 7 H 0.090 0.910 8 N -0.368 5.368 9 C 0.097 3.903 10 C -0.214 4.214 11 C -0.108 4.108 12 C -0.126 4.126 13 C 0.027 3.973 14 C -0.565 4.565 15 H 0.070 0.930 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.193 1.193 22 C -0.109 4.109 23 C -0.216 4.216 24 C -0.158 4.158 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.156 0.844 34 H 0.128 0.872 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.150 0.850 40 H 0.093 0.907 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.134 13.018 3.151 25.871 hybrid contribution 1.250 -0.115 0.314 1.294 sum -20.884 12.903 3.465 24.792 Atomic orbital electron populations 1.21794 0.94022 1.02127 1.02065 1.21949 0.96157 0.99017 0.93990 0.90691 1.22534 0.94775 1.00206 0.97805 1.22877 0.98019 1.01094 0.96030 1.21615 0.84808 0.99019 0.90466 0.90957 1.44726 1.14024 1.18263 1.59826 1.17705 0.88026 0.90387 0.94178 1.20668 0.93550 1.01284 1.05942 1.20830 0.97823 0.93320 0.98850 1.20126 0.95981 0.96578 0.99877 1.17972 0.90920 0.92785 0.95620 1.21429 1.04635 1.20421 1.10045 0.92976 1.25961 0.99832 0.94735 0.99090 1.70084 1.25947 1.24687 1.36561 0.85500 0.77931 0.78381 0.79238 1.19291 1.20457 1.19276 1.20831 0.92953 0.99371 0.97765 1.20673 0.99702 0.94373 1.06902 1.22484 0.95711 0.99300 0.98315 0.92224 0.92266 0.92401 0.90836 0.91108 0.92474 0.92074 0.76046 0.84389 0.87181 0.98436 0.98507 0.92633 0.87404 0.85030 0.90669 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.12 71.98 0.66 -0.75 16 2 C -0.09 -1.12 3.46 -9.68 -0.03 -1.15 16 3 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 4 C -0.12 -1.60 6.33 31.89 0.20 -1.40 16 5 C -0.14 -2.65 6.54 31.67 0.21 -2.44 16 6 C 0.15 2.75 2.92 45.72 0.13 2.88 16 7 H 0.07 1.49 6.48 -2.39 -0.02 1.48 16 8 N -0.74 -16.43 5.22 -315.54 -1.65 -18.08 16 9 C 0.20 6.13 6.65 38.21 0.25 6.39 16 10 C -0.19 -6.37 9.90 22.40 0.22 -6.15 16 11 C -0.09 -3.70 9.69 22.25 0.22 -3.48 16 12 C -0.12 -5.83 5.07 -19.84 -0.10 -5.93 16 13 C 0.06 3.63 5.10 29.10 0.15 3.78 16 14 C -0.53 -31.55 9.09 25.60 0.23 -31.32 16 15 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 16 C 0.00 0.09 5.46 84.66 0.46 0.55 16 17 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 18 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C -0.09 -3.78 9.69 22.25 0.22 -3.56 16 23 C -0.19 -6.60 9.21 22.40 0.21 -6.39 16 24 C -0.12 -1.64 6.14 31.35 0.19 -1.45 16 25 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.56 8.11 -2.39 -0.02 0.54 16 28 H 0.07 0.96 8.06 -2.39 -0.02 0.94 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.28 8.05 -2.39 -0.02 1.26 16 32 H 0.40 7.42 8.32 -92.71 -0.77 6.65 16 33 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 34 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 36 H 0.00 -0.20 8.08 -2.39 -0.02 -0.22 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.13 3.80 6.24 -2.91 -0.02 3.78 16 40 H 0.07 0.96 7.61 -2.38 -0.02 0.94 16 41 H 0.08 1.01 7.82 -2.39 -0.02 0.99 16 Total: -1.00 -67.28 331.52 4.10 -63.18 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.22 Total: 15.45 kcal Atomic # 6 Polarization: -53.65 SS G_CDS: 3.21 Total: -50.43 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.36 Total: -75.89 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -67.28 4.10 -63.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903298710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.660 kcal (2) G-P(sol) polarization free energy of solvation -67.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds