Wall clock time and date at job start Mon Mar 30 2020 06:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41389 * 126.57303 * 2 1 4 4 C 1.34620 * 106.83187 * 179.97438 * 3 2 1 5 5 Br 1.89102 * 125.79923 * 179.97438 * 4 3 2 6 6 O 1.34310 * 108.40262 * 359.74245 * 4 3 2 7 7 C 1.34346 * 109.47153 * 0.43126 * 6 4 3 8 8 C 1.50707 * 125.78039 * 179.83213 * 7 6 4 9 9 H 1.08999 * 109.47345 * 194.69373 * 8 7 6 10 10 O 1.42903 * 109.46442 * 314.69303 * 8 7 6 11 11 C 1.50696 * 109.47163 * 74.68922 * 8 7 6 12 12 H 1.07991 * 120.00427 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99614 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00261 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99746 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47128 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47366 * 120.00160 * 15 13 11 18 18 H 1.48504 * 109.47370 * 240.00254 * 15 13 11 19 19 H 1.09010 * 109.46714 * 270.01989 * 1 2 3 20 20 H 1.08999 * 109.47201 * 30.01907 * 1 2 3 21 21 H 1.08995 * 109.47215 * 150.02614 * 1 2 3 22 22 H 1.08002 * 126.58786 * 0.02562 * 3 2 1 23 23 H 0.96700 * 114.00311 * 60.00230 * 10 8 7 24 24 H 0.97001 * 120.00070 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1355 0.0000 4 6 3.6166 0.6808 0.0006 5 35 5.1758 1.7508 0.0002 6 8 3.5852 -0.6619 0.0067 7 6 2.3085 -1.0801 0.0005 8 6 1.8517 -2.5162 0.0007 9 1 0.7957 -2.5617 -0.2656 10 8 2.6155 -3.2591 -0.9516 11 6 2.0494 -3.1061 1.3733 12 1 2.4640 -2.5015 2.1662 13 6 1.7010 -4.4177 1.6166 14 7 1.1966 -5.1542 0.6508 15 14 1.9455 -5.1487 3.3182 16 1 2.5251 -4.1209 4.2198 17 1 0.6367 -5.5987 3.8563 18 1 2.8697 -6.3078 3.2310 19 1 -0.3633 0.0004 1.0278 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3633 -0.8902 -0.5134 22 1 2.0366 2.1692 0.0004 23 1 3.5666 -3.2622 -0.7766 24 1 0.9512 -6.0769 0.8222 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536015813.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:11 Heat of formation + Delta-G solvation = -39.478310 kcal Electronic energy + Delta-G solvation = -12359.329349 eV Core-core repulsion = 9899.747383 eV Total energy + Delta-G solvation = -2459.581966 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.983 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.05571 -35.77437 -33.65650 -32.30356 -31.86429 -29.29991 -27.67878 -25.66426 -22.71475 -20.89919 -19.13133 -17.23585 -16.55695 -15.54120 -14.75803 -14.65962 -13.91640 -13.27134 -12.66125 -12.63468 -12.44558 -11.91396 -11.63507 -11.25478 -11.20628 -11.00591 -10.90676 -10.43373 -10.27511 -9.55286 -9.12021 -8.78388 -8.57783 -7.65960 -6.17545 -4.37921 1.25411 2.09065 3.02420 3.20781 3.29329 3.34573 3.97766 4.29845 5.09499 5.30668 5.53751 5.65827 5.99518 6.06718 6.22375 6.32238 6.47236 6.53716 6.98327 7.12844 7.64343 7.74648 7.89031 8.63281 9.11777 9.37566 10.85711 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.006626 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.898231 B = 4224.745415 C = 4572.498101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.215 4.215 3 C -0.145 4.145 4 C -0.062 4.062 5 Br 0.024 6.976 6 O -0.155 6.155 7 C 0.047 3.953 8 C 0.299 3.701 9 H 0.095 0.905 10 O -0.556 6.556 11 C -0.571 4.571 12 H 0.061 0.939 13 C 0.082 3.918 14 N -0.856 5.856 15 Si 0.898 3.102 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 H 0.064 0.936 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.148 0.852 23 H 0.355 0.645 24 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 12.813 -1.220 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.216 4.216 3 C -0.167 4.167 4 C -0.189 4.189 5 Br 0.108 6.892 6 O -0.052 6.052 7 C -0.007 4.007 8 C 0.241 3.759 9 H 0.113 0.887 10 O -0.359 6.359 11 C -0.608 4.608 12 H 0.080 0.920 13 C -0.125 4.125 14 N -0.491 5.491 15 Si 0.725 3.275 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.206 1.206 19 H 0.083 0.917 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.166 0.834 23 H 0.200 0.800 24 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.420 12.746 -1.544 13.579 hybrid contribution 0.324 -0.292 1.265 1.338 sum 4.744 12.454 -0.279 13.330 Atomic orbital electron populations 1.20074 0.89048 1.01922 1.01909 1.20133 0.97379 0.91274 1.12857 1.21439 0.90267 0.99918 1.05072 1.23438 0.93359 0.83766 1.18349 1.96677 1.33835 1.60498 1.98226 1.84088 1.30399 1.19489 1.71180 1.24992 0.78973 1.00046 0.96694 1.18495 0.92386 0.75095 0.89891 0.88734 1.86579 1.21106 1.75094 1.53128 1.21504 1.46276 0.97452 0.95597 0.92032 1.25018 0.93554 0.96756 0.97197 1.70061 1.39355 1.08178 1.31548 0.86455 0.78105 0.79205 0.83782 1.19518 1.20585 1.20610 0.91702 0.92467 0.91283 0.83384 0.80013 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.13 36.01 0.36 -0.84 14 2 C -0.21 -4.21 6.16 -104.74 -0.65 -4.86 14 3 C -0.14 -2.55 10.82 -39.66 -0.43 -2.98 14 4 C -0.06 -1.15 7.80 29.45 0.23 -0.92 14 5 Br 0.02 0.35 34.09 -68.01 -2.32 -1.97 14 6 O -0.16 -3.38 10.65 5.34 0.06 -3.32 14 7 C 0.05 1.05 6.11 -35.63 -0.22 0.83 14 8 C 0.30 7.54 3.22 -29.03 -0.09 7.45 14 9 H 0.10 2.47 6.80 -51.93 -0.35 2.11 14 10 O -0.56 -14.33 12.72 -35.47 -0.45 -14.78 14 11 C -0.57 -15.47 8.75 -34.44 -0.30 -15.77 14 12 H 0.06 1.69 7.74 -52.49 -0.41 1.28 14 13 C 0.08 2.22 5.40 -17.82 -0.10 2.13 14 14 N -0.86 -24.28 12.84 55.43 0.71 -23.57 14 15 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 14 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 14 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 14 19 H 0.06 1.03 8.14 -51.92 -0.42 0.61 14 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 14 21 H 0.07 1.18 7.01 -51.93 -0.36 0.81 14 22 H 0.15 2.12 8.06 -52.49 -0.42 1.70 14 23 H 0.36 8.29 9.02 45.56 0.41 8.70 14 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 14 LS Contribution 242.76 15.07 3.66 3.66 Total: -1.00 -29.07 242.76 -5.67 -34.74 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -1.12 Total: 4.46 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.19 Total: -14.96 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.71 Total: -23.57 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.39 Total: -18.10 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -2.32 Total: -1.97 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.07 -5.67 -34.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536015813.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.741 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds