Wall clock time and date at job start Mon Mar 30 2020 06:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41389 * 126.57303 * 2 1 4 4 C 1.34620 * 106.83187 * 179.97438 * 3 2 1 5 5 Br 1.89102 * 125.79923 * 179.97438 * 4 3 2 6 6 O 1.34310 * 108.40262 * 359.74245 * 4 3 2 7 7 C 1.34346 * 109.47153 * 0.43126 * 6 4 3 8 8 C 1.50707 * 125.78039 * 179.83213 * 7 6 4 9 9 H 1.08999 * 109.47345 * 194.69373 * 8 7 6 10 10 O 1.42903 * 109.46442 * 314.69303 * 8 7 6 11 11 C 1.50696 * 109.47163 * 74.68922 * 8 7 6 12 12 H 1.07991 * 120.00427 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99614 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00261 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99746 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47128 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47366 * 120.00160 * 15 13 11 18 18 H 1.48504 * 109.47370 * 240.00254 * 15 13 11 19 19 H 1.09010 * 109.46714 * 270.01989 * 1 2 3 20 20 H 1.08999 * 109.47201 * 30.01907 * 1 2 3 21 21 H 1.08995 * 109.47215 * 150.02614 * 1 2 3 22 22 H 1.08002 * 126.58786 * 0.02562 * 3 2 1 23 23 H 0.96700 * 114.00311 * 60.00230 * 10 8 7 24 24 H 0.97001 * 120.00070 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1355 0.0000 4 6 3.6166 0.6808 0.0006 5 35 5.1758 1.7508 0.0002 6 8 3.5852 -0.6619 0.0067 7 6 2.3085 -1.0801 0.0005 8 6 1.8517 -2.5162 0.0007 9 1 0.7957 -2.5617 -0.2656 10 8 2.6155 -3.2591 -0.9516 11 6 2.0494 -3.1061 1.3733 12 1 2.4640 -2.5015 2.1662 13 6 1.7010 -4.4177 1.6166 14 7 1.1966 -5.1542 0.6508 15 14 1.9455 -5.1487 3.3182 16 1 2.5251 -4.1209 4.2198 17 1 0.6367 -5.5987 3.8563 18 1 2.8697 -6.3078 3.2310 19 1 -0.3633 0.0004 1.0278 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3633 -0.8902 -0.5134 22 1 2.0366 2.1692 0.0004 23 1 3.5666 -3.2622 -0.7766 24 1 0.9512 -6.0769 0.8222 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536015813.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:11 Heat of formation + Delta-G solvation = -59.328995 kcal Electronic energy + Delta-G solvation = -12360.190139 eV Core-core repulsion = 9899.747383 eV Total energy + Delta-G solvation = -2460.442756 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.983 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.59612 -37.73677 -35.16964 -34.38277 -33.25312 -30.88835 -29.29463 -27.43006 -24.57757 -22.39464 -20.71169 -19.26538 -18.19865 -17.14841 -16.76427 -16.36453 -15.65498 -15.08671 -14.15392 -14.05486 -13.97463 -13.53165 -13.39693 -13.07933 -12.84353 -12.73222 -12.30949 -12.13195 -11.78681 -11.41439 -10.83182 -10.59052 -10.51888 -9.23094 -8.22879 -6.51656 -0.12433 0.56399 1.38421 1.39770 1.50387 1.55246 2.33884 2.43557 3.02401 3.89759 3.95863 4.17464 4.29798 4.62397 4.86926 4.90002 4.98477 5.13377 5.24192 5.53216 5.59001 5.84187 6.12404 6.54596 7.14507 7.30738 8.80183 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.006626 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.898231 B = 4224.745415 C = 4572.498101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.206 4.206 3 C -0.141 4.141 4 C -0.071 4.071 5 Br 0.065 6.935 6 O -0.177 6.177 7 C 0.001 3.999 8 C 0.302 3.698 9 H 0.077 0.923 10 O -0.571 6.571 11 C -0.584 4.584 12 H 0.051 0.949 13 C 0.035 3.965 14 N -0.891 5.891 15 Si 0.965 3.035 16 H -0.270 1.270 17 H -0.270 1.270 18 H -0.275 1.275 19 H 0.071 0.929 20 H 0.092 0.908 21 H 0.056 0.944 22 H 0.187 0.813 23 H 0.361 0.639 24 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 14.365 -0.483 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.208 4.208 3 C -0.162 4.162 4 C -0.198 4.198 5 Br 0.148 6.852 6 O -0.074 6.074 7 C -0.051 4.051 8 C 0.244 3.756 9 H 0.094 0.906 10 O -0.375 6.375 11 C -0.621 4.621 12 H 0.070 0.930 13 C -0.169 4.169 14 N -0.527 5.527 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.196 1.196 18 H -0.201 1.201 19 H 0.090 0.910 20 H 0.110 0.890 21 H 0.074 0.926 22 H 0.204 0.796 23 H 0.207 0.793 24 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.611 14.307 -0.809 15.053 hybrid contribution 0.343 -0.640 0.992 1.229 sum 4.953 13.667 0.183 14.538 Atomic orbital electron populations 1.20184 0.87189 1.03038 1.02664 1.20609 0.98826 0.91158 1.10187 1.21848 0.89374 1.01033 1.03981 1.24212 0.95773 0.82881 1.16918 1.96711 1.31768 1.58644 1.98092 1.84022 1.30154 1.21345 1.71914 1.24417 0.80132 0.99482 1.01108 1.18136 0.91590 0.77062 0.88779 0.90612 1.86515 1.21704 1.75805 1.53521 1.21716 1.46222 0.97879 0.96323 0.93047 1.25822 0.93068 0.97058 1.00916 1.70161 1.40307 1.08599 1.33598 0.85430 0.78366 0.78249 0.79105 1.19421 1.19553 1.20081 0.91025 0.88965 0.92552 0.79588 0.79310 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.34 10.13 71.24 0.72 -1.62 14 2 C -0.21 -7.86 6.16 -19.94 -0.12 -7.98 14 3 C -0.14 -4.60 10.82 22.22 0.24 -4.36 14 4 C -0.07 -2.52 7.80 66.99 0.52 -2.00 14 5 Br 0.06 1.71 34.09 -20.37 -0.69 1.01 14 6 O -0.18 -7.70 10.65 -2.75 -0.03 -7.73 14 7 C 0.00 0.06 6.11 24.83 0.15 0.21 14 8 C 0.30 15.71 3.22 29.10 0.09 15.80 14 9 H 0.08 4.14 6.80 -2.39 -0.02 4.12 14 10 O -0.57 -30.47 12.72 -148.75 -1.89 -32.36 14 11 C -0.58 -32.31 8.75 25.60 0.22 -32.09 14 12 H 0.05 2.88 7.74 -2.92 -0.02 2.85 14 13 C 0.04 1.94 5.40 84.66 0.46 2.39 14 14 N -0.89 -51.30 12.84 21.45 0.28 -51.02 14 15 Si 0.96 42.76 29.54 68.60 2.03 44.78 14 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 14 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 14 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 14 19 H 0.07 2.17 8.14 -2.38 -0.02 2.15 14 20 H 0.09 2.24 8.14 -2.39 -0.02 2.22 14 21 H 0.06 1.92 7.01 -2.39 -0.02 1.90 14 22 H 0.19 4.52 8.06 -2.91 -0.02 4.50 14 23 H 0.36 17.57 9.02 -74.06 -0.67 16.90 14 24 H 0.27 14.45 8.31 -92.71 -0.77 13.68 14 Total: -1.00 -62.26 242.76 2.54 -59.72 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.56 Total: 15.24 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 2.29 Total: -29.65 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.28 Total: -51.02 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.92 Total: -40.08 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 35 Polarization: 1.71 SS G_CDS: -0.69 Total: 1.01 kcal Total: -62.26 2.54 -59.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536015813.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.393 kcal (2) G-P(sol) polarization free energy of solvation -62.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds