Wall clock time and date at job start Mon Mar 30 2020 06:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33399 * 122.54099 * 2 1 4 4 S 1.75878 * 109.60691 * 180.02562 * 3 2 1 5 5 C 1.75883 * 90.97754 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.19915 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 270.02151 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46983 * 120.00379 * 11 9 7 14 14 H 1.48503 * 109.47491 * 240.00192 * 11 9 7 15 15 C 1.33429 * 109.59833 * 0.22787 * 5 4 3 16 16 Br 1.89103 * 122.54769 * 179.77105 * 15 5 4 17 17 H 1.09003 * 109.47216 * 89.97780 * 1 2 3 18 18 H 1.09004 * 109.46750 * 209.97308 * 1 2 3 19 19 H 1.08993 * 109.47368 * 329.97414 * 1 2 3 20 20 H 1.08008 * 125.19699 * 0.02562 * 3 2 1 21 21 H 1.09004 * 109.47210 * 150.02444 * 6 5 4 22 22 H 1.08994 * 109.47551 * 30.02096 * 6 5 4 23 23 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1246 0.0000 4 16 3.9387 0.7309 -0.0007 5 6 3.5743 -0.9898 -0.0018 6 6 4.5991 -2.0947 -0.0034 7 6 4.9400 -2.4615 -1.4248 8 1 4.4627 -1.9458 -2.2449 9 6 5.8660 -3.4513 -1.6782 10 7 6.4475 -4.0790 -0.6795 11 14 6.2942 -3.9006 -3.4400 12 1 5.5078 -3.0533 -4.3721 13 1 7.7439 -3.6750 -3.6700 14 1 5.9719 -5.3305 -3.6786 15 6 2.2519 -1.1672 -0.0066 16 35 1.4556 -2.8824 -0.0156 17 1 -0.3634 0.0004 -1.0277 18 1 -0.3633 -0.8903 0.5134 19 1 -0.3634 0.8897 0.5142 20 1 1.8154 2.1241 0.0004 21 1 4.1938 -2.9669 0.5097 22 1 5.4989 -1.7565 0.5103 23 1 7.0986 -4.7755 -0.8578 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536041519.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:51 Heat of formation + Delta-G solvation = 0.604361 kcal Electronic energy + Delta-G solvation = -10144.868816 eV Core-core repulsion = 8129.777837 eV Total energy + Delta-G solvation = -2015.090980 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 259.957 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.36072 -35.55421 -33.21964 -31.56445 -29.58930 -27.62986 -25.35940 -22.23332 -19.53327 -18.57381 -18.04072 -16.60799 -15.74538 -15.16263 -14.46438 -14.35161 -13.99422 -13.68725 -13.11437 -12.93818 -12.79191 -12.50423 -12.36374 -11.88514 -11.62811 -11.56866 -11.51009 -10.88398 -10.58574 -9.34225 -9.18830 -8.20522 -6.32230 0.07887 0.34261 1.02163 1.38883 1.40031 1.49952 1.52356 1.58985 2.40721 3.12031 3.96552 4.22140 4.57242 4.64414 4.81725 4.86279 5.03543 5.28402 5.39160 5.41151 5.58181 5.70714 6.09666 6.75703 7.35062 8.89164 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.010073 C = 0.008026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.011354 B = 2778.970585 C = 3487.652966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.092 4.092 3 C -0.221 4.221 4 S 0.114 5.886 5 C -0.120 4.120 6 C 0.083 3.917 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.959 3.041 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.277 1.277 15 C -0.140 4.140 16 Br -0.039 7.039 17 H 0.078 0.922 18 H 0.067 0.933 19 H 0.093 0.907 20 H 0.203 0.797 21 H 0.030 0.970 22 H 0.008 0.992 23 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.684 8.048 1.476 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C -0.357 4.357 4 S 0.377 5.623 5 C -0.240 4.240 6 C 0.044 3.956 7 C -0.553 4.553 8 H 0.070 0.930 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.784 3.216 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.203 1.203 15 C -0.230 4.230 16 Br 0.045 6.955 17 H 0.097 0.903 18 H 0.086 0.914 19 H 0.112 0.888 20 H 0.219 0.781 21 H 0.048 0.952 22 H 0.026 0.974 23 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.519 8.171 1.520 13.407 hybrid contribution -0.388 -1.071 -0.675 1.324 sum -10.907 7.101 0.845 13.042 Atomic orbital electron populations 1.20636 0.87152 1.03959 1.03318 1.18902 0.99053 0.89820 1.02712 1.25623 0.94558 1.03002 1.12479 1.84092 1.07567 0.97737 1.72865 1.25116 0.97576 0.99741 1.01542 1.17773 0.90450 0.89927 0.97428 1.21145 1.23228 1.19529 0.91447 0.93014 1.25778 0.95729 0.95815 1.01374 1.70066 1.28561 1.25106 1.32763 0.85477 0.78152 0.78198 0.79779 1.19028 1.20110 1.20295 1.20782 0.93615 0.92893 1.15745 1.96497 1.80558 1.20521 1.97963 0.90306 0.91436 0.88834 0.78051 0.95244 0.97394 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.12 9.79 71.24 0.70 -1.42 14 2 C -0.09 -2.88 5.80 -20.91 -0.12 -3.01 14 3 C -0.22 -6.25 10.98 66.72 0.73 -5.52 14 4 S 0.11 4.00 23.33 -56.49 -1.32 2.68 14 5 C -0.12 -5.27 5.70 24.60 0.14 -5.13 14 6 C 0.08 4.39 5.11 29.10 0.15 4.53 14 7 C -0.51 -28.97 9.09 25.60 0.23 -28.73 14 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 14 9 C 0.01 0.67 5.46 84.66 0.46 1.13 14 10 N -0.93 -54.98 13.29 21.45 0.28 -54.69 14 11 Si 0.96 44.29 29.54 68.60 2.03 46.31 14 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 14 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 14 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 14 15 C -0.14 -5.51 6.16 21.23 0.13 -5.38 14 16 Br -0.04 -1.49 31.39 -20.37 -0.64 -2.12 14 17 H 0.08 1.69 8.14 -2.39 -0.02 1.67 14 18 H 0.07 1.62 7.17 -2.38 -0.02 1.60 14 19 H 0.09 1.61 8.12 -2.39 -0.02 1.59 14 20 H 0.20 3.92 8.06 -2.91 -0.02 3.90 14 21 H 0.03 1.66 7.32 -2.38 -0.02 1.64 14 22 H 0.01 0.44 8.14 -2.39 -0.02 0.42 14 23 H 0.27 14.81 8.31 -92.70 -0.77 14.04 14 Total: -1.00 -62.22 239.96 3.99 -58.23 By element: Atomic # 1 Polarization: -8.10 SS G_CDS: 1.21 Total: -6.89 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 2.42 Total: -43.53 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.28 Total: -54.69 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.32 Total: 2.68 kcal Atomic # 35 Polarization: -1.49 SS G_CDS: -0.64 Total: -2.12 kcal Total: -62.22 3.99 -58.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536041519.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.836 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds