Wall clock time and date at job start Mon Mar 30 2020 06:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39785 * 120.07082 * 47.16478 * 3 2 1 5 5 C 1.37693 * 119.96292 * 179.74479 * 4 3 2 6 6 C 1.39103 * 120.09697 * 0.54875 * 5 4 3 7 7 N 1.39347 * 119.92749 * 179.72467 * 6 5 4 8 8 C 1.46900 * 110.99852 * 62.89694 * 7 6 5 9 9 C 1.50705 * 109.46897 * 170.00324 * 8 7 6 10 10 H 1.08001 * 119.99821 * 359.97438 * 9 8 7 11 11 C 1.37868 * 120.00101 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00190 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 120.00114 * 359.72592 * 11 9 8 14 14 H 1.48494 * 109.47199 * 89.99340 * 13 11 9 15 15 H 1.48495 * 109.47101 * 210.00006 * 13 11 9 16 16 H 1.48505 * 109.46602 * 329.99570 * 13 11 9 17 17 C 1.46899 * 110.99516 * 298.94292 * 7 6 5 18 18 C 1.53001 * 117.50127 * 271.24830 * 17 7 6 19 19 C 1.53005 * 117.49478 * 202.62476 * 17 7 6 20 20 C 1.39338 * 120.14396 * 359.45298 * 6 5 4 21 21 F 1.35091 * 119.98494 * 180.25050 * 20 6 5 22 22 C 1.37832 * 120.03414 * 0.26619 * 20 6 5 23 23 H 1.08005 * 120.02047 * 0.02562 * 4 3 2 24 24 H 1.07997 * 119.95580 * 180.27387 * 5 4 3 25 25 H 1.08999 * 109.47049 * 50.00094 * 8 7 6 26 26 H 1.09000 * 109.47153 * 289.99924 * 8 7 6 27 27 H 0.97000 * 120.00284 * 180.02562 * 12 11 9 28 28 H 1.09004 * 115.55542 * 56.96350 * 17 7 6 29 29 H 1.08999 * 117.49263 * 0.02562 * 18 17 7 30 30 H 1.08995 * 117.50004 * 145.02320 * 18 17 7 31 31 H 1.08997 * 117.49766 * 214.97914 * 19 17 7 32 32 H 1.08995 * 117.49711 * 0.02562 * 19 17 7 33 33 H 1.08003 * 120.05077 * 179.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.8215 -0.8871 5 6 4.6457 -0.8152 -0.8888 6 6 5.3407 -0.0003 -0.0012 7 7 6.7342 -0.0011 -0.0020 8 6 7.2600 0.4755 -1.2882 9 6 8.7466 0.6947 -1.1729 10 1 9.2502 0.4999 -0.2376 11 6 9.4636 1.1439 -2.2614 12 7 10.7608 1.3357 -2.1607 13 14 8.5939 1.4735 -3.8815 14 1 8.1317 2.8842 -3.9171 15 1 9.5333 1.2317 -5.0058 16 1 7.4251 0.5663 -4.0092 17 6 7.2600 -1.3343 0.3204 18 6 7.4863 -1.6665 1.7966 19 6 8.6830 -1.4169 0.8765 20 6 4.6465 0.8208 0.8850 21 9 5.3247 1.6147 1.7422 22 6 3.2682 0.8234 0.8876 23 1 2.7306 -1.4580 -1.5739 24 1 5.1870 -1.4472 -1.5773 25 1 6.7738 1.4141 -1.5542 26 1 7.0612 -0.2681 -2.0600 27 1 11.2653 1.6520 -2.9264 28 1 6.9271 -2.1415 -0.3322 29 1 7.2445 -0.8959 2.5286 30 1 7.3020 -2.6923 2.1156 31 1 9.2860 -2.2785 0.5902 32 1 9.2287 -0.4819 1.0035 33 1 2.7298 1.4595 1.5746 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549478.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:51 Heat of formation + Delta-G solvation = 40.878925 kcal Electronic energy + Delta-G solvation = -18752.725214 eV Core-core repulsion = 15693.986970 eV Total energy + Delta-G solvation = -3058.738244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.73138 -40.92896 -38.98645 -37.35552 -35.41894 -34.49725 -31.80168 -31.35670 -28.93298 -24.87023 -23.87057 -23.66814 -23.09029 -21.38899 -20.21754 -19.15219 -17.66896 -17.43418 -17.00682 -16.86856 -16.34895 -15.83954 -15.64219 -15.14408 -14.99730 -14.95401 -14.59314 -14.41743 -13.98207 -13.83438 -13.50475 -13.23879 -12.97308 -12.68725 -12.54203 -12.45296 -12.27159 -11.85601 -11.43537 -10.96503 -10.82242 -10.67932 -10.02350 -9.62988 -9.31693 -8.18977 -6.21748 -0.44844 0.15012 1.38112 1.39406 1.47640 1.53963 1.75877 2.39046 2.61930 2.69941 2.83007 3.09253 3.13685 3.39885 3.77779 3.98256 4.12824 4.19055 4.23178 4.33402 4.54144 4.63125 4.77132 4.82457 4.90271 5.01033 5.04401 5.12108 5.20339 5.33696 5.46526 5.58957 5.60232 6.01276 6.35025 6.37665 6.71327 6.90490 7.40329 8.95527 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.006488 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.543603 B = 4314.325477 C = 4981.137027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.288 3.712 3 C -0.013 4.013 4 C -0.048 4.048 5 C -0.128 4.128 6 C 0.090 3.910 7 N -0.492 5.492 8 C 0.183 3.817 9 C -0.515 4.515 10 H 0.068 0.932 11 C 0.014 3.986 12 N -0.946 5.946 13 Si 0.930 3.070 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.243 1.243 17 C 0.013 3.987 18 C -0.152 4.152 19 C -0.158 4.158 20 C 0.098 3.902 21 F -0.138 7.138 22 C -0.087 4.087 23 H 0.169 0.831 24 H 0.147 0.853 25 H 0.021 0.979 26 H 0.007 0.993 27 H 0.264 0.736 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 -6.664 3.497 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.027 4.027 3 C -0.016 4.016 4 C -0.069 4.069 5 C -0.148 4.148 6 C -0.006 4.006 7 N -0.213 5.213 8 C 0.058 3.942 9 C -0.553 4.553 10 H 0.086 0.914 11 C -0.184 4.184 12 N -0.588 5.588 13 Si 0.754 3.246 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.166 1.166 17 C -0.093 4.093 18 C -0.190 4.190 19 C -0.195 4.195 20 C 0.077 3.923 21 F -0.116 7.116 22 C -0.109 4.109 23 H 0.186 0.814 24 H 0.165 0.835 25 H 0.039 0.961 26 H 0.024 0.976 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.538 -6.256 3.791 17.174 hybrid contribution 0.846 0.301 -1.219 1.514 sum -14.691 -5.955 2.573 16.060 Atomic orbital electron populations 1.81296 1.12874 1.09368 1.09236 1.25410 0.92114 0.92595 0.92603 1.15610 0.83740 1.01648 1.00644 1.21309 0.92898 0.96313 0.96404 1.21703 0.94808 0.99531 0.98719 1.19467 0.90231 0.95775 0.95125 1.59043 1.02837 1.24866 1.34594 1.19986 0.94699 0.94407 0.85121 1.21554 0.91875 1.42836 0.99010 0.91431 1.25676 0.95252 0.95277 1.02160 1.70023 1.08111 1.48477 1.32164 0.85972 0.79447 0.79454 0.79685 1.19993 1.21254 1.16645 1.22263 1.00598 0.89037 0.97447 1.23093 1.01585 1.02688 0.91599 1.22925 0.90910 1.02351 1.03329 1.17537 0.89573 0.93471 0.91694 1.91495 1.80612 1.71647 1.67892 1.21095 0.90886 0.99403 0.99516 0.81352 0.83503 0.96105 0.97571 0.92723 0.88409 0.89638 0.86185 0.88401 0.90545 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.02 18.54 19.00 0.35 -10.67 16 2 C 0.29 5.73 15.33 88.33 1.35 7.08 16 3 C -0.01 -0.23 5.74 -21.28 -0.12 -0.36 16 4 C -0.05 -0.82 9.74 22.52 0.22 -0.60 16 5 C -0.13 -2.91 8.65 22.35 0.19 -2.72 16 6 C 0.09 2.71 4.68 38.42 0.18 2.89 16 7 N -0.49 -18.56 4.41 -675.39 -2.98 -21.54 16 8 C 0.18 8.03 3.41 85.56 0.29 8.32 16 9 C -0.51 -27.63 8.90 25.60 0.23 -27.40 16 10 H 0.07 3.96 4.86 -2.91 -0.01 3.95 16 11 C 0.01 0.75 5.47 84.65 0.46 1.21 16 12 N -0.95 -57.07 13.96 21.44 0.30 -56.77 16 13 Si 0.93 41.85 27.47 68.60 1.88 43.73 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 16 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 17 C 0.01 0.45 4.43 44.92 0.20 0.65 16 18 C -0.15 -4.40 10.46 30.60 0.32 -4.08 16 19 C -0.16 -5.70 9.09 30.60 0.28 -5.42 16 20 C 0.10 2.72 7.30 22.44 0.16 2.89 16 21 F -0.14 -4.56 17.07 44.97 0.77 -3.80 16 22 C -0.09 -1.78 9.72 22.56 0.22 -1.56 16 23 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 24 H 0.15 3.16 7.29 -2.91 -0.02 3.14 16 25 H 0.02 0.94 7.49 -2.39 -0.02 0.92 16 26 H 0.01 0.28 6.64 -2.39 -0.02 0.26 16 27 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.10 2.90 7.52 -2.38 -0.02 2.88 16 29 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.08 3.41 5.85 -2.39 -0.01 3.40 16 33 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -64.80 293.63 5.40 -59.40 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.09 Total: 8.73 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 3.99 Total: -19.09 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -2.33 Total: -88.98 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.77 Total: -3.80 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.73 kcal Total: -64.80 5.40 -59.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549478.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.282 kcal (2) G-P(sol) polarization free energy of solvation -64.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds