Wall clock time and date at job start Mon Mar 30 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46919 * 2 1 4 4 C 1.50702 * 109.46941 * 240.00286 * 2 1 3 5 5 H 1.07997 * 119.99684 * 239.99678 * 4 2 1 6 6 C 1.37872 * 120.00073 * 59.99841 * 4 2 1 7 7 N 1.31513 * 120.00310 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99737 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47495 * 59.99774 * 8 6 4 10 10 H 1.48500 * 109.46966 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46721 * 299.99356 * 8 6 4 12 12 C 1.50700 * 109.47523 * 119.99651 * 2 1 3 13 13 C 1.38287 * 119.93983 * 59.98192 * 12 2 1 14 14 C 1.38123 * 120.05390 * 180.02562 * 13 12 2 15 15 C 1.38744 * 119.94541 * 359.97438 * 14 13 12 16 16 O 1.35899 * 120.05962 * 179.97438 * 15 14 13 17 17 C 1.38711 * 119.88994 * 0.02562 * 15 14 13 18 18 C 1.50697 * 120.03040 * 180.02562 * 17 15 14 19 19 F 1.39902 * 109.47272 * 179.97438 * 18 17 15 20 20 F 1.39898 * 109.47325 * 299.97664 * 18 17 15 21 21 F 1.39900 * 109.47261 * 59.97886 * 18 17 15 22 22 C 1.38165 * 119.94450 * 0.02562 * 17 15 14 23 23 H 1.08994 * 109.47588 * 60.00002 * 1 2 3 24 24 H 1.09007 * 109.46919 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47349 * 299.99852 * 1 2 3 26 26 H 0.96995 * 120.00257 * 179.97438 * 7 6 4 27 27 H 1.08001 * 119.97583 * 0.04213 * 13 12 2 28 28 H 1.08000 * 120.02757 * 180.02562 * 14 13 12 29 29 H 0.96704 * 113.99561 * 270.02540 * 16 15 14 30 30 H 1.08002 * 119.97562 * 179.72226 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8268 -0.4198 -5.2204 11 1 3.8062 -1.1207 -4.0082 12 6 2.0324 -0.7103 1.2305 13 6 1.6973 -2.0342 1.4484 14 6 2.1561 -2.6873 2.5756 15 6 2.9542 -2.0143 3.4894 16 8 3.4064 -2.6545 4.5996 17 6 3.2889 -0.6864 3.2686 18 6 4.1560 0.0475 4.2588 19 9 4.3537 1.3616 3.8214 20 9 3.5275 0.0616 5.5085 21 9 5.3919 -0.5992 4.3656 22 6 2.8266 -0.0371 2.1400 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7086 1.1613 -3.4843 27 1 1.0766 -2.5579 0.7364 28 1 1.8945 -3.7214 2.7452 29 1 2.8159 -2.5842 5.3621 30 1 3.0832 0.9981 1.9698 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333599.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:16 Heat of formation + Delta-G solvation = -197.757717 kcal Electronic energy + Delta-G solvation = -19536.781619 eV Core-core repulsion = 15881.173033 eV Total energy + Delta-G solvation = -3655.608586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.16936 -48.70242 -48.61628 -40.94195 -38.28444 -35.86504 -33.28951 -32.60985 -29.61673 -27.20182 -26.86883 -24.17470 -23.44634 -21.64451 -19.78330 -19.49802 -19.40119 -18.64622 -18.01513 -16.82516 -16.59433 -16.46890 -15.61859 -15.52066 -15.31060 -15.08048 -14.94757 -14.80262 -14.68973 -14.64711 -13.88993 -13.61895 -13.37186 -13.22745 -13.02939 -12.79080 -12.58387 -12.23151 -12.09105 -11.58373 -11.39891 -11.02204 -10.46703 -10.17773 -9.42628 -8.10126 -6.24275 -0.04530 0.28854 1.44060 1.45149 1.52227 1.64924 2.40130 2.54847 2.70335 3.01735 3.11483 3.18687 3.42737 3.91442 4.14834 4.39011 4.41054 4.61390 4.84665 4.93920 5.01389 5.19601 5.23562 5.31429 5.46439 5.64896 5.77074 5.98072 6.07976 6.32356 6.70028 6.84207 7.44220 8.94154 Molecular weight = 260.08amu Principal moments of inertia in cm(-1) A = 0.028872 B = 0.005712 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.563591 B = 4900.888956 C = 5096.853790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.071 3.929 3 H 0.007 0.993 4 C -0.524 4.524 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.276 1.276 12 C -0.064 4.064 13 C -0.067 4.067 14 C -0.138 4.138 15 C 0.138 3.862 16 O -0.496 6.496 17 C -0.222 4.222 18 C 0.521 3.479 19 F -0.182 7.182 20 F -0.175 7.175 21 F -0.178 7.178 22 C -0.079 4.079 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.137 0.863 28 H 0.165 0.835 29 H 0.412 0.588 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 -5.035 13.337 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.053 3.947 3 H 0.026 0.974 4 C -0.562 4.562 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.777 3.223 9 H -0.192 1.192 10 H -0.211 1.211 11 H -0.202 1.202 12 C -0.064 4.064 13 C -0.085 4.085 14 C -0.156 4.156 15 C 0.093 3.907 16 O -0.309 6.309 17 C -0.224 4.224 18 C 0.467 3.533 19 F -0.164 7.164 20 F -0.156 7.156 21 F -0.159 7.159 22 C -0.097 4.097 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.183 0.817 29 H 0.272 0.728 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.248 -5.043 12.896 14.029 hybrid contribution 0.091 0.295 -0.614 0.687 sum 2.339 -4.749 12.282 13.374 Atomic orbital electron populations 1.21652 0.96787 0.99778 0.99945 1.17768 0.93588 0.94130 0.89242 0.97448 1.21357 1.31361 1.12573 0.90954 0.92650 1.25665 0.95181 0.95627 1.01687 1.69990 1.37356 1.23922 1.24163 0.85715 0.78591 0.79051 0.78949 1.19239 1.21071 1.20199 1.20460 0.95341 0.95127 0.95464 1.21293 0.97448 0.93569 0.96178 1.21597 0.97854 1.01792 0.94387 1.17965 0.94741 0.87914 0.90041 1.84793 1.50288 1.74462 1.21382 1.20366 1.07032 0.95949 0.99060 1.18032 0.78692 0.76617 0.80008 1.93154 1.95374 1.38367 1.89475 1.93167 1.82101 1.96367 1.43952 1.93201 1.45070 1.81401 1.96260 1.20884 0.96225 1.00416 0.92216 0.92183 0.94197 0.95420 0.92858 0.84470 0.81746 0.72823 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.78 71.98 0.63 -4.97 16 2 C 0.07 3.39 2.48 -12.29 -0.03 3.36 16 3 H 0.01 0.39 7.87 -2.38 -0.02 0.37 16 4 C -0.52 -27.32 8.24 25.60 0.21 -27.11 16 5 H 0.06 2.84 7.60 -2.91 -0.02 2.82 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -50.86 11.32 21.45 0.24 -50.61 16 8 Si 0.95 42.10 29.54 68.60 2.03 44.12 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 12 C -0.06 -2.53 4.74 -19.85 -0.09 -2.62 16 13 C -0.07 -2.26 8.70 22.25 0.19 -2.07 16 14 C -0.14 -3.81 9.99 22.36 0.22 -3.58 16 15 C 0.14 3.91 6.58 22.50 0.15 4.06 16 16 O -0.50 -11.48 12.41 -92.41 -1.15 -12.63 16 17 C -0.22 -7.08 5.38 -19.77 -0.11 -7.18 16 18 C 0.52 15.49 2.99 71.24 0.21 15.70 16 19 F -0.18 -5.65 15.97 44.97 0.72 -4.93 16 20 F -0.17 -4.62 16.95 44.97 0.76 -3.86 16 21 F -0.18 -5.48 16.95 44.97 0.76 -4.72 16 22 C -0.08 -2.89 9.05 22.25 0.20 -2.69 16 23 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 24 H 0.04 1.67 7.39 -2.38 -0.02 1.65 16 25 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 27 H 0.14 4.58 7.57 -2.91 -0.02 4.55 16 28 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.41 5.54 9.06 -74.05 -0.67 4.87 16 30 H 0.13 4.75 7.04 -2.91 -0.02 4.73 16 Total: -1.00 -58.46 273.81 5.93 -52.53 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.52 Total: 5.81 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 2.04 Total: -25.72 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.24 Total: -50.61 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.15 Total: -12.63 kcal Atomic # 9 Polarization: -15.75 SS G_CDS: 2.24 Total: -13.51 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -58.46 5.93 -52.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333599.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.226 kcal (2) G-P(sol) polarization free energy of solvation -58.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds