Wall clock time and date at job start Mon Mar 30 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47183 * 2 1 4 4 C 1.35641 * 116.99782 * 179.97438 * 3 2 1 5 5 C 1.41350 * 120.26437 * 269.97574 * 4 3 2 6 6 C 1.41156 * 120.29131 * 0.02562 * 5 4 3 7 7 H 1.07998 * 120.00066 * 334.27679 * 6 5 4 8 8 C 1.39938 * 119.99609 * 154.27180 * 6 5 4 9 9 N 1.30863 * 120.00552 * 343.31974 * 8 6 5 10 10 Si 1.86807 * 119.99694 * 163.32173 * 8 6 5 11 11 H 1.48496 * 109.47312 * 89.99574 * 10 8 6 12 12 H 1.48494 * 109.47014 * 210.00042 * 10 8 6 13 13 H 1.48501 * 109.46923 * 329.99862 * 10 8 6 14 14 C 1.40693 * 119.42221 * 179.76188 * 5 4 3 15 15 C 1.36531 * 119.92276 * 0.55736 * 14 5 4 16 16 C 1.38777 * 120.54193 * 359.43987 * 15 14 5 17 17 C 1.38353 * 120.58944 * 0.27161 * 16 15 14 18 18 C 1.50695 * 119.97291 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.47191 * 0.02562 * 18 17 16 20 20 F 1.39900 * 109.46877 * 120.00118 * 18 17 16 21 21 F 1.39898 * 109.47043 * 239.99943 * 18 17 16 22 22 H 1.08995 * 109.47500 * 299.99643 * 1 2 3 23 23 H 1.08998 * 109.47170 * 60.00029 * 1 2 3 24 24 H 1.09002 * 109.47182 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46740 * 239.99963 * 2 1 3 26 26 H 1.09004 * 109.47044 * 120.00377 * 2 1 3 27 27 H 0.96996 * 120.00203 * 180.02562 * 9 8 6 28 28 H 1.07992 * 120.04219 * 180.29207 * 14 5 4 29 29 H 1.08002 * 119.72566 * 179.70883 * 15 14 5 30 30 H 1.07998 * 119.70565 * 180.29766 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.0567 1.6189 1.2217 6 6 3.3683 1.5282 2.4506 7 1 2.3244 1.7994 2.5061 8 6 4.0385 1.0867 3.5970 9 7 5.1800 0.4565 3.4859 10 14 3.3036 1.3971 5.2862 11 1 2.4277 0.2583 5.6618 12 1 4.3953 1.5319 6.2838 13 1 2.5036 2.6478 5.2558 14 6 5.4521 1.7981 1.2016 15 6 6.1097 1.8909 0.0087 16 6 5.4145 1.7984 -1.1889 17 6 4.0431 1.6162 -1.1946 18 6 3.3022 1.5170 -2.5031 19 9 4.2084 1.6361 -3.5623 20 9 2.6557 0.2787 -2.5802 21 9 2.3549 2.5434 -2.5816 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.6443 0.1502 4.2805 28 1 6.0018 1.8665 2.1286 29 1 7.1802 2.0332 -0.0030 30 1 5.9490 1.8688 -2.1247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705935492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:05 Heat of formation + Delta-G solvation = -181.060888 kcal Electronic energy + Delta-G solvation = -20190.446827 eV Core-core repulsion = 16535.562270 eV Total energy + Delta-G solvation = -3654.884557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.43838 -47.00365 -46.86737 -38.67208 -36.22977 -34.02193 -31.12098 -30.51517 -28.92660 -25.44130 -24.86320 -22.40536 -21.10868 -20.64721 -18.20187 -17.78625 -17.68886 -16.64473 -16.05888 -15.46765 -14.90666 -14.22661 -13.94307 -13.87412 -13.63759 -13.47855 -13.26293 -13.14794 -13.07383 -12.91876 -12.28134 -11.99407 -11.67063 -11.55219 -11.26811 -11.13713 -11.10811 -10.65549 -10.59815 -10.11690 -9.85108 -9.40859 -8.76014 -7.88282 -7.59031 -6.99181 -4.56788 2.26160 2.48182 2.97192 2.98620 3.06207 3.48283 3.78594 4.27210 4.60522 4.74522 4.89738 5.09753 5.47198 5.68894 5.83103 6.02306 6.09251 6.22763 6.37442 6.52088 6.61656 6.74422 6.79001 6.97753 7.00185 7.31609 7.60927 7.73054 7.89861 8.20411 8.48816 8.58994 8.87199 9.94028 Molecular weight = 260.08amu Principal moments of inertia in cm(-1) A = 0.023850 B = 0.008298 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.740928 B = 3373.365597 C = 4220.132812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.323 6.323 4 C 0.015 3.985 5 C 0.096 3.904 6 C -0.437 4.437 7 H 0.089 0.911 8 C 0.073 3.927 9 N -0.787 5.787 10 Si 0.913 3.087 11 H -0.268 1.268 12 H -0.274 1.274 13 H -0.258 1.258 14 C -0.131 4.131 15 C -0.108 4.108 16 C -0.193 4.193 17 C -0.166 4.166 18 C 0.510 3.490 19 F -0.190 7.190 20 F -0.186 7.186 21 F -0.180 7.180 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.285 0.715 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 -0.601 -3.426 4.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.240 6.240 4 C -0.030 4.030 5 C 0.092 3.908 6 C -0.465 4.465 7 H 0.107 0.893 8 C -0.146 4.146 9 N -0.412 5.412 10 Si 0.737 3.263 11 H -0.193 1.193 12 H -0.199 1.199 13 H -0.181 1.181 14 C -0.150 4.150 15 C -0.126 4.126 16 C -0.213 4.213 17 C -0.168 4.168 18 C 0.456 3.544 19 F -0.172 7.172 20 F -0.167 7.167 21 F -0.161 7.161 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.119 0.881 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.227 -0.599 -3.308 4.032 hybrid contribution -0.165 -0.243 0.516 0.594 sum -2.392 -0.842 -2.791 3.771 Atomic orbital electron populations 1.21685 0.94763 1.01275 1.02434 1.22751 0.94189 0.84845 1.00754 1.85943 1.18527 1.25259 1.94259 1.18179 0.83184 1.10864 0.90820 1.17790 0.91918 0.89573 0.91475 1.19553 0.98586 1.36817 0.91566 0.89331 1.26017 0.94385 0.92270 1.01926 1.69799 1.13946 1.24946 1.32462 0.86212 0.79654 0.80330 0.80122 1.19271 1.19902 1.18120 1.21204 0.94732 1.01902 0.97206 1.20430 0.98190 1.01474 0.92552 1.20095 0.91345 1.11910 0.97939 1.19874 0.94965 1.12238 0.89691 1.18569 0.77052 0.73286 0.85516 1.93080 1.67659 1.95816 1.60636 1.93082 1.82846 1.44166 1.96643 1.93159 1.66470 1.59734 1.96779 0.92116 0.92542 0.91826 0.93177 0.93006 0.90390 0.85446 0.88062 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.28 37.16 0.38 -1.95 16 2 C 0.05 1.00 6.41 37.16 0.24 1.23 16 3 O -0.32 -7.56 8.47 -18.62 -0.16 -7.72 16 4 C 0.01 0.36 5.64 -38.34 -0.22 0.15 16 5 C 0.10 2.44 5.58 -106.68 -0.60 1.85 16 6 C -0.44 -11.02 8.71 -37.84 -0.33 -11.35 16 7 H 0.09 2.23 7.67 -52.49 -0.40 1.83 16 8 C 0.07 1.72 5.16 -17.33 -0.09 1.63 16 9 N -0.79 -18.86 10.95 55.55 0.61 -18.25 16 10 Si 0.91 17.70 29.59 -169.99 -5.03 12.67 16 11 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 12 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 13 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 14 C -0.13 -3.18 8.63 -39.27 -0.34 -3.51 16 15 C -0.11 -2.36 9.97 -40.00 -0.40 -2.76 16 16 C -0.19 -4.20 9.43 -39.34 -0.37 -4.57 16 17 C -0.17 -3.80 5.38 -104.52 -0.56 -4.36 16 18 C 0.51 10.62 2.99 36.00 0.11 10.72 16 19 F -0.19 -3.67 15.96 2.25 0.04 -3.64 16 20 F -0.19 -3.77 14.29 2.25 0.03 -3.73 16 21 F -0.18 -3.78 16.95 2.25 0.04 -3.75 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 28 H 0.13 3.12 6.18 -52.49 -0.32 2.79 16 29 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 30 H 0.11 2.08 7.14 -52.49 -0.37 1.71 16 LS Contribution 271.27 15.07 4.09 4.09 Total: -1.00 -25.69 271.27 -5.20 -30.89 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -2.64 Total: 2.37 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.17 Total: -12.94 kcal Atomic # 7 Polarization: -18.86 SS G_CDS: 0.61 Total: -18.25 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.16 Total: -7.72 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 0.11 Total: -11.12 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.69 -5.20 -30.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705935492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.169 kcal (2) G-P(sol) polarization free energy of solvation -25.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds