Wall clock time and date at job start Mon Mar 30 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47183 * 2 1 4 4 C 1.35641 * 116.99782 * 179.97438 * 3 2 1 5 5 C 1.41350 * 120.26437 * 269.97574 * 4 3 2 6 6 C 1.41156 * 120.29131 * 0.02562 * 5 4 3 7 7 H 1.07998 * 120.00066 * 334.27679 * 6 5 4 8 8 C 1.39938 * 119.99609 * 154.27180 * 6 5 4 9 9 N 1.30863 * 120.00552 * 343.31974 * 8 6 5 10 10 Si 1.86807 * 119.99694 * 163.32173 * 8 6 5 11 11 H 1.48496 * 109.47312 * 89.99574 * 10 8 6 12 12 H 1.48494 * 109.47014 * 210.00042 * 10 8 6 13 13 H 1.48501 * 109.46923 * 329.99862 * 10 8 6 14 14 C 1.40693 * 119.42221 * 179.76188 * 5 4 3 15 15 C 1.36531 * 119.92276 * 0.55736 * 14 5 4 16 16 C 1.38777 * 120.54193 * 359.43987 * 15 14 5 17 17 C 1.38353 * 120.58944 * 0.27161 * 16 15 14 18 18 C 1.50695 * 119.97291 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.47191 * 0.02562 * 18 17 16 20 20 F 1.39900 * 109.46877 * 120.00118 * 18 17 16 21 21 F 1.39898 * 109.47043 * 239.99943 * 18 17 16 22 22 H 1.08995 * 109.47500 * 299.99643 * 1 2 3 23 23 H 1.08998 * 109.47170 * 60.00029 * 1 2 3 24 24 H 1.09002 * 109.47182 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46740 * 239.99963 * 2 1 3 26 26 H 1.09004 * 109.47044 * 120.00377 * 2 1 3 27 27 H 0.96996 * 120.00203 * 180.02562 * 9 8 6 28 28 H 1.07992 * 120.04219 * 180.29207 * 14 5 4 29 29 H 1.08002 * 119.72566 * 179.70883 * 15 14 5 30 30 H 1.07998 * 119.70565 * 180.29766 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.0567 1.6189 1.2217 6 6 3.3683 1.5282 2.4506 7 1 2.3244 1.7994 2.5061 8 6 4.0385 1.0867 3.5970 9 7 5.1800 0.4565 3.4859 10 14 3.3036 1.3971 5.2862 11 1 2.4277 0.2583 5.6618 12 1 4.3953 1.5319 6.2838 13 1 2.5036 2.6478 5.2558 14 6 5.4521 1.7981 1.2016 15 6 6.1097 1.8909 0.0087 16 6 5.4145 1.7984 -1.1889 17 6 4.0431 1.6162 -1.1946 18 6 3.3022 1.5170 -2.5031 19 9 4.2084 1.6361 -3.5623 20 9 2.6557 0.2787 -2.5802 21 9 2.3549 2.5434 -2.5816 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.6443 0.1502 4.2805 28 1 6.0018 1.8665 2.1286 29 1 7.1802 2.0332 -0.0030 30 1 5.9490 1.8688 -2.1247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705935492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:04 Heat of formation + Delta-G solvation = -193.218448 kcal Electronic energy + Delta-G solvation = -20190.974018 eV Core-core repulsion = 16535.562270 eV Total energy + Delta-G solvation = -3655.411749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.08310 -48.62057 -48.52841 -40.44686 -37.97854 -35.80746 -32.68427 -32.28949 -30.64860 -27.25739 -26.57820 -23.95121 -22.88418 -22.39366 -19.95114 -19.43935 -19.34274 -18.42052 -17.81290 -17.18833 -16.57991 -15.92015 -15.60609 -15.51340 -15.30642 -15.12226 -14.91635 -14.78879 -14.70599 -14.56139 -13.91875 -13.54111 -13.29117 -13.17437 -12.90237 -12.77614 -12.72234 -12.26032 -12.20784 -11.78669 -11.61355 -11.15866 -10.50815 -9.70225 -9.39536 -8.75102 -6.43660 0.45667 0.72641 1.37843 1.44721 1.52640 1.80303 2.17199 2.51281 2.89630 3.03869 3.24384 3.37972 3.70889 4.20491 4.37875 4.42630 4.55818 4.63110 4.81004 4.90141 5.02912 5.07331 5.17783 5.23470 5.26480 5.53948 5.81316 5.90974 6.08924 6.36862 6.65331 6.75830 7.06954 8.20661 Molecular weight = 260.08amu Principal moments of inertia in cm(-1) A = 0.023850 B = 0.008298 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.740928 B = 3373.365597 C = 4220.132812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.046 3.954 3 O -0.337 6.337 4 C -0.003 4.003 5 C 0.066 3.934 6 C -0.468 4.468 7 H 0.075 0.925 8 C 0.040 3.960 9 N -0.812 5.812 10 Si 0.980 3.020 11 H -0.262 1.262 12 H -0.261 1.261 13 H -0.261 1.261 14 C -0.149 4.149 15 C -0.105 4.105 16 C -0.188 4.188 17 C -0.180 4.180 18 C 0.517 3.483 19 F -0.178 7.178 20 F -0.183 7.183 21 F -0.182 7.182 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.294 0.706 28 H 0.119 0.881 29 H 0.134 0.866 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 -0.773 -3.626 4.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 O -0.254 6.254 4 C -0.048 4.048 5 C 0.063 3.937 6 C -0.496 4.496 7 H 0.094 0.906 8 C -0.177 4.177 9 N -0.437 5.437 10 Si 0.801 3.199 11 H -0.187 1.187 12 H -0.185 1.185 13 H -0.185 1.185 14 C -0.169 4.169 15 C -0.123 4.123 16 C -0.208 4.208 17 C -0.182 4.182 18 C 0.463 3.537 19 F -0.160 7.160 20 F -0.164 7.164 21 F -0.163 7.163 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.105 0.895 28 H 0.137 0.863 29 H 0.152 0.848 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.236 -0.777 -3.528 4.248 hybrid contribution -0.124 -0.211 0.475 0.534 sum -2.360 -0.988 -3.053 3.983 Atomic orbital electron populations 1.21691 0.91552 1.03428 1.02670 1.22926 0.96740 0.83363 0.99818 1.85899 1.18190 1.27040 1.94279 1.18408 0.83748 1.11367 0.91297 1.18149 0.92901 0.90418 0.92211 1.19622 0.98344 1.38812 0.92812 0.90639 1.26733 0.94683 0.91407 1.04886 1.69813 1.14843 1.25128 1.33896 0.85219 0.79098 0.79911 0.75720 1.18681 1.18497 1.18528 1.21239 0.94472 1.03225 0.97929 1.20766 0.99850 0.99984 0.91723 1.20473 0.91081 1.10176 0.99037 1.20137 0.95746 1.12122 0.90210 1.18254 0.77008 0.73367 0.85054 1.93101 1.67218 1.95767 1.59868 1.93086 1.82766 1.43939 1.96606 1.93156 1.66519 1.59852 1.96762 0.92199 0.91933 0.88705 0.93084 0.94905 0.89467 0.86305 0.84787 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 10.28 71.98 0.74 -3.49 16 2 C 0.05 1.86 6.41 71.98 0.46 2.32 16 3 O -0.34 -15.97 8.47 -89.55 -0.76 -16.73 16 4 C 0.00 -0.15 5.64 23.08 0.13 -0.02 16 5 C 0.07 3.46 5.58 -21.20 -0.12 3.34 16 6 C -0.47 -24.29 8.71 23.40 0.20 -24.09 16 7 H 0.08 3.97 7.67 -2.91 -0.02 3.95 16 8 C 0.04 1.88 5.16 85.25 0.44 2.32 16 9 N -0.81 -39.23 10.95 21.83 0.24 -38.99 16 10 Si 0.98 36.28 29.59 68.60 2.03 38.31 16 11 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 12 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 13 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 14 C -0.15 -7.29 8.63 22.47 0.19 -7.10 16 15 C -0.11 -4.46 9.97 22.00 0.22 -4.24 16 16 C -0.19 -7.86 9.43 22.43 0.21 -7.65 16 17 C -0.18 -8.12 5.38 -19.80 -0.11 -8.23 16 18 C 0.52 20.81 2.99 71.23 0.21 21.02 16 19 F -0.18 -6.45 15.96 44.97 0.72 -5.74 16 20 F -0.18 -7.16 14.29 44.97 0.64 -6.52 16 21 F -0.18 -7.42 16.95 44.97 0.76 -6.66 16 22 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 25 H 0.05 2.02 5.63 -2.39 -0.01 2.01 16 26 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.29 12.72 8.30 -92.71 -0.77 11.95 16 28 H 0.12 5.92 6.18 -2.91 -0.02 5.90 16 29 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.13 4.81 7.14 -2.91 -0.02 4.79 16 Total: -1.00 -54.88 271.27 7.40 -47.49 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.18 Total: 14.63 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 2.59 Total: -25.81 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.24 Total: -38.99 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.76 Total: -16.73 kcal Atomic # 9 Polarization: -21.04 SS G_CDS: 2.12 Total: -18.91 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -54.88 7.40 -47.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705935492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.731 kcal (2) G-P(sol) polarization free energy of solvation -54.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds