Wall clock time and date at job start Mon Mar 30 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30450 * 120.00445 * 2 1 4 4 N 1.40095 * 120.00480 * 179.59857 * 3 2 1 5 5 C 1.34774 * 120.00196 * 175.70845 * 4 3 2 6 6 O 1.21917 * 120.00127 * 359.97438 * 5 4 3 7 7 C 1.41058 * 120.00129 * 180.02562 * 5 4 3 8 8 H 1.08006 * 119.99685 * 359.97438 * 7 5 4 9 9 C 1.40223 * 119.99984 * 179.97438 * 7 5 4 10 10 N 1.30583 * 120.00297 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99626 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47256 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46973 * 120.00355 * 11 9 7 14 14 H 1.48503 * 109.46964 * 239.99966 * 11 9 7 15 15 C 1.47052 * 120.00161 * 180.02562 * 2 1 3 16 16 C 1.40026 * 120.18350 * 114.35075 * 15 2 1 17 17 C 1.37804 * 119.81345 * 179.97438 * 16 15 2 18 18 C 1.38505 * 120.18249 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.81547 * 179.97438 * 18 17 16 20 20 C 1.38457 * 120.36722 * 359.97438 * 18 17 16 21 21 C 1.37838 * 120.18462 * 0.02562 * 20 18 17 22 22 C 1.50701 * 120.09340 * 180.27836 * 21 20 18 23 23 H 1.08997 * 109.47067 * 269.99867 * 1 2 3 24 24 H 1.09004 * 109.47055 * 29.99051 * 1 2 3 25 25 H 1.08994 * 109.47572 * 149.99775 * 1 2 3 26 26 H 0.96998 * 119.99700 * 355.70252 * 4 3 2 27 27 H 0.96996 * 120.00252 * 180.02562 * 10 9 7 28 28 H 1.07998 * 120.09244 * 0.02562 * 16 15 2 29 29 H 1.07995 * 119.91018 * 180.02562 * 17 16 15 30 30 H 1.09000 * 109.47068 * 89.99521 * 19 18 17 31 31 H 1.08999 * 109.47374 * 209.99631 * 19 18 17 32 32 H 1.09007 * 109.47048 * 330.00225 * 19 18 17 33 33 H 1.08004 * 119.90315 * 180.02562 * 20 18 17 34 34 H 1.09005 * 109.46644 * 263.40406 * 22 21 20 35 35 H 1.08990 * 109.47223 * 23.40225 * 22 21 20 36 36 H 1.08994 * 109.46903 * 143.40584 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1297 0.0000 4 7 3.5602 1.1297 0.0085 5 6 4.2347 2.2933 -0.0788 6 8 3.6256 3.3459 -0.1657 7 6 5.6452 2.2933 -0.0708 8 1 6.1847 1.3607 0.0057 9 6 6.3469 3.5039 -0.1622 10 7 5.6946 4.6313 -0.2553 11 14 8.2149 3.5037 -0.1509 12 1 8.7091 2.1080 -0.0382 13 1 8.7176 4.1062 -1.4117 14 1 8.7029 4.2971 1.0057 15 6 2.2423 -1.2735 -0.0006 16 6 3.0265 -1.6331 -1.1035 17 6 3.7128 -2.8281 -1.0957 18 6 3.6280 -3.6727 -0.0012 19 6 4.3815 -4.9777 -0.0017 20 6 2.8548 -3.3246 1.0933 21 6 2.1620 -2.1329 1.1016 22 6 1.3260 -1.7532 2.2966 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8901 -0.5137 25 1 -0.3634 -0.8899 -0.5138 26 1 4.0448 0.2922 0.0773 27 1 6.1800 5.4686 -0.3189 28 1 3.0940 -0.9755 -1.9574 29 1 4.3184 -3.1068 -1.9453 30 1 5.3739 -4.8244 0.4220 31 1 3.8400 -5.7102 0.5970 32 1 4.4756 -5.3425 -1.0246 33 1 2.7943 -3.9886 1.9430 34 1 0.2868 -2.0273 2.1148 35 1 1.6918 -2.2798 3.1780 36 1 1.3948 -0.6779 2.4612 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038203877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:55 Heat of formation + Delta-G solvation = 8.321697 kcal Electronic energy + Delta-G solvation = -18900.184548 eV Core-core repulsion = 15963.494822 eV Total energy + Delta-G solvation = -2936.689726 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.62078 -37.48183 -35.76184 -33.38375 -32.58703 -31.75790 -31.24881 -28.13454 -27.14005 -26.64883 -25.88441 -22.18448 -21.05065 -20.41825 -18.78373 -17.44139 -16.57314 -15.60915 -15.48122 -14.89969 -14.32366 -13.96004 -13.92084 -13.41243 -13.19642 -13.11678 -12.79277 -12.68136 -12.67081 -12.34940 -12.05059 -11.94644 -11.45793 -11.31173 -11.24953 -11.19458 -10.93148 -10.59913 -10.36682 -10.30741 -9.39233 -8.96248 -8.68029 -8.34057 -7.69159 -7.32083 -6.34765 -4.88692 1.29444 1.51726 2.69431 3.06531 3.13331 3.18579 3.80092 3.85618 4.19099 4.49134 4.81303 4.87580 4.95972 5.03416 5.31920 5.34935 5.53133 5.58363 5.69350 5.72800 5.76108 5.81342 5.81418 5.89242 5.93896 5.98694 6.13016 6.29591 6.39007 6.62428 6.66036 6.69852 6.91818 7.10997 7.26059 7.92205 8.07420 8.78557 8.82741 9.38949 10.44747 10.72208 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.005872 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.552199 B = 4767.433323 C = 5758.475487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.046 3.954 3 N -0.186 5.186 4 N -0.591 5.591 5 C 0.559 3.441 6 O -0.556 6.556 7 C -0.537 4.537 8 H 0.069 0.931 9 C 0.089 3.911 10 N -0.747 5.747 11 Si 0.914 3.086 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.273 1.273 15 C -0.077 4.077 16 C -0.095 4.095 17 C -0.124 4.124 18 C -0.085 4.085 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.061 4.061 22 C -0.114 4.114 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.370 0.630 27 H 0.273 0.727 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 -17.388 1.489 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.146 4.146 3 N 0.005 4.995 4 N -0.338 5.338 5 C 0.367 3.633 6 O -0.435 6.435 7 C -0.574 4.574 8 H 0.087 0.913 9 C -0.134 4.134 10 N -0.374 5.374 11 Si 0.738 3.262 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.198 1.198 15 C -0.079 4.079 16 C -0.114 4.114 17 C -0.142 4.142 18 C -0.085 4.085 19 C -0.169 4.169 20 C -0.142 4.142 21 C -0.063 4.063 22 C -0.171 4.171 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.206 0.794 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.733 -15.312 1.405 16.088 hybrid contribution 1.500 -1.280 -0.011 1.972 sum -3.233 -16.592 1.394 16.961 Atomic orbital electron populations 1.20379 0.88221 1.02616 1.02273 1.23276 0.96293 0.87596 1.07446 1.75003 0.95426 1.23443 1.05580 1.47960 0.98617 1.11135 1.76070 1.16870 0.87617 0.80628 0.78165 1.90697 1.69630 1.29546 1.53667 1.19853 0.90081 0.94298 1.53188 0.91254 1.25750 1.00490 0.94714 0.92445 1.70016 1.36971 0.98358 1.32071 0.86208 0.82147 0.79365 0.78487 1.18538 1.19839 1.19833 1.19407 0.98947 0.95202 0.94390 1.21382 0.96002 0.96375 0.97686 1.20903 1.00435 0.94500 0.98387 1.19981 0.97743 0.96592 0.94224 1.20780 0.99763 0.93909 1.02467 1.20793 0.98492 0.96714 0.98197 1.20050 0.97478 0.93612 0.95171 1.20820 0.98929 1.02561 0.94743 0.91290 0.90869 0.91459 0.79351 0.91627 0.85894 0.86076 0.91209 0.91770 0.91681 0.86225 0.90944 0.91872 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.70 36.00 0.35 -0.70 16 2 C 0.05 0.83 5.38 -79.61 -0.43 0.40 16 3 N -0.19 -4.34 11.07 35.11 0.39 -3.95 16 4 N -0.59 -14.95 5.98 28.99 0.17 -14.78 16 5 C 0.56 16.86 7.67 -15.19 -0.12 16.75 16 6 O -0.56 -19.05 15.21 4.99 0.08 -18.97 16 7 C -0.54 -15.43 9.28 -37.77 -0.35 -15.78 16 8 H 0.07 1.82 7.85 -52.48 -0.41 1.41 16 9 C 0.09 2.48 5.50 -17.34 -0.10 2.39 16 10 N -0.75 -22.33 11.71 55.56 0.65 -21.68 16 11 Si 0.91 19.87 29.56 -169.99 -5.02 14.85 16 12 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 C -0.08 -1.24 4.33 -104.99 -0.45 -1.70 16 16 C -0.10 -1.50 8.55 -39.07 -0.33 -1.83 16 17 C -0.12 -1.67 9.68 -39.64 -0.38 -2.05 16 18 C -0.09 -1.05 5.89 -104.44 -0.62 -1.66 16 19 C -0.11 -1.02 10.00 36.00 0.36 -0.66 16 20 C -0.12 -1.55 9.31 -39.65 -0.37 -1.92 16 21 C -0.06 -0.87 5.92 -104.11 -0.62 -1.48 16 22 C -0.11 -1.37 8.63 36.01 0.31 -1.06 16 23 H 0.07 0.84 7.56 -51.93 -0.39 0.44 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 0.78 8.11 -51.93 -0.42 0.35 16 26 H 0.37 8.46 6.50 -182.60 -1.19 7.27 16 27 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 28 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 36 H 0.07 1.00 7.26 -51.93 -0.38 0.62 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -35.57 313.04 -7.48 -43.05 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.72 Total: 6.08 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.74 Total: -9.31 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 1.21 Total: -40.41 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.08 Total: -18.97 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.57 -7.48 -43.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038203877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.371 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds