Wall clock time and date at job start Mon Mar 30 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30450 * 120.00445 * 2 1 4 4 N 1.40095 * 120.00480 * 179.59857 * 3 2 1 5 5 C 1.34774 * 120.00196 * 175.70845 * 4 3 2 6 6 O 1.21917 * 120.00127 * 359.97438 * 5 4 3 7 7 C 1.41058 * 120.00129 * 180.02562 * 5 4 3 8 8 H 1.08006 * 119.99685 * 359.97438 * 7 5 4 9 9 C 1.40223 * 119.99984 * 179.97438 * 7 5 4 10 10 N 1.30583 * 120.00297 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99626 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47256 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46973 * 120.00355 * 11 9 7 14 14 H 1.48503 * 109.46964 * 239.99966 * 11 9 7 15 15 C 1.47052 * 120.00161 * 180.02562 * 2 1 3 16 16 C 1.40026 * 120.18350 * 114.35075 * 15 2 1 17 17 C 1.37804 * 119.81345 * 179.97438 * 16 15 2 18 18 C 1.38505 * 120.18249 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.81547 * 179.97438 * 18 17 16 20 20 C 1.38457 * 120.36722 * 359.97438 * 18 17 16 21 21 C 1.37838 * 120.18462 * 0.02562 * 20 18 17 22 22 C 1.50701 * 120.09340 * 180.27836 * 21 20 18 23 23 H 1.08997 * 109.47067 * 269.99867 * 1 2 3 24 24 H 1.09004 * 109.47055 * 29.99051 * 1 2 3 25 25 H 1.08994 * 109.47572 * 149.99775 * 1 2 3 26 26 H 0.96998 * 119.99700 * 355.70252 * 4 3 2 27 27 H 0.96996 * 120.00252 * 180.02562 * 10 9 7 28 28 H 1.07998 * 120.09244 * 0.02562 * 16 15 2 29 29 H 1.07995 * 119.91018 * 180.02562 * 17 16 15 30 30 H 1.09000 * 109.47068 * 89.99521 * 19 18 17 31 31 H 1.08999 * 109.47374 * 209.99631 * 19 18 17 32 32 H 1.09007 * 109.47048 * 330.00225 * 19 18 17 33 33 H 1.08004 * 119.90315 * 180.02562 * 20 18 17 34 34 H 1.09005 * 109.46644 * 263.40406 * 22 21 20 35 35 H 1.08990 * 109.47223 * 23.40225 * 22 21 20 36 36 H 1.08994 * 109.46903 * 143.40584 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1297 0.0000 4 7 3.5602 1.1297 0.0085 5 6 4.2347 2.2933 -0.0788 6 8 3.6256 3.3459 -0.1657 7 6 5.6452 2.2933 -0.0708 8 1 6.1847 1.3607 0.0057 9 6 6.3469 3.5039 -0.1622 10 7 5.6946 4.6313 -0.2553 11 14 8.2149 3.5037 -0.1509 12 1 8.7091 2.1080 -0.0382 13 1 8.7176 4.1062 -1.4117 14 1 8.7029 4.2971 1.0057 15 6 2.2423 -1.2735 -0.0006 16 6 3.0265 -1.6331 -1.1035 17 6 3.7128 -2.8281 -1.0957 18 6 3.6280 -3.6727 -0.0012 19 6 4.3815 -4.9777 -0.0017 20 6 2.8548 -3.3246 1.0933 21 6 2.1620 -2.1329 1.1016 22 6 1.3260 -1.7532 2.2966 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8901 -0.5137 25 1 -0.3634 -0.8899 -0.5138 26 1 4.0448 0.2922 0.0773 27 1 6.1800 5.4686 -0.3189 28 1 3.0940 -0.9755 -1.9574 29 1 4.3184 -3.1068 -1.9453 30 1 5.3739 -4.8244 0.4220 31 1 3.8400 -5.7102 0.5970 32 1 4.4756 -5.3425 -1.0246 33 1 2.7943 -3.9886 1.9430 34 1 0.2868 -2.0273 2.1148 35 1 1.6918 -2.2798 3.1780 36 1 1.3948 -0.6779 2.4612 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038203877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:54 Heat of formation + Delta-G solvation = -15.949840 kcal Electronic energy + Delta-G solvation = -18901.237041 eV Core-core repulsion = 15963.494822 eV Total energy + Delta-G solvation = -2937.742219 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82034 -39.42204 -37.41432 -34.93310 -34.43547 -33.17313 -32.55329 -29.88974 -28.16106 -27.85620 -27.56539 -23.31174 -22.56183 -21.98809 -20.34058 -19.29668 -18.14748 -17.64663 -16.69358 -16.02086 -15.93419 -15.33911 -15.11164 -14.97059 -14.66105 -14.30573 -14.08490 -14.04782 -13.99059 -13.38271 -13.25432 -13.08817 -12.93089 -12.84360 -12.77030 -12.39380 -12.37602 -12.19469 -12.00857 -11.88657 -11.02360 -10.90597 -10.00602 -9.76558 -9.53926 -9.12316 -8.44315 -7.11439 0.15381 0.43157 1.16711 1.35745 1.40212 1.55936 2.09990 2.39484 2.40473 2.71458 3.60710 3.62608 3.86533 3.92523 3.99343 4.32861 4.38884 4.45238 4.64389 4.70430 4.75275 4.81016 4.82467 4.86675 4.89249 5.02689 5.12837 5.16574 5.22499 5.32306 5.37524 5.49985 5.61100 5.65503 5.80075 6.02025 6.06786 6.65863 6.96712 7.43931 8.40187 8.57649 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.005872 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.552199 B = 4767.433323 C = 5758.475487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.097 3.903 3 N -0.265 5.265 4 N -0.595 5.595 5 C 0.545 3.455 6 O -0.617 6.617 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.032 3.968 10 N -0.801 5.801 11 Si 1.008 2.992 12 H -0.246 1.246 13 H -0.262 1.262 14 H -0.262 1.262 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.131 4.131 18 C -0.077 4.077 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.063 4.063 22 C -0.114 4.114 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.377 0.623 27 H 0.282 0.718 28 H 0.101 0.899 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 -20.942 2.387 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 N -0.071 5.071 4 N -0.340 5.340 5 C 0.354 3.646 6 O -0.502 6.502 7 C -0.600 4.600 8 H 0.105 0.895 9 C -0.187 4.187 10 N -0.429 5.429 11 Si 0.826 3.174 12 H -0.168 1.168 13 H -0.187 1.187 14 H -0.187 1.187 15 C -0.117 4.117 16 C -0.131 4.131 17 C -0.149 4.149 18 C -0.077 4.077 19 C -0.168 4.168 20 C -0.142 4.142 21 C -0.064 4.064 22 C -0.170 4.170 23 H 0.113 0.887 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.215 0.785 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.156 0.844 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.169 0.831 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.787 -18.931 2.306 19.444 hybrid contribution 0.986 -0.453 -0.284 1.122 sum -2.801 -19.385 2.022 19.690 Atomic orbital electron populations 1.20648 0.85190 1.03875 1.04302 1.24225 0.98111 0.87569 0.99658 1.75085 0.94137 1.26172 1.11724 1.47222 0.99920 1.09878 1.77018 1.17270 0.88589 0.81031 0.77695 1.90623 1.70968 1.31872 1.56774 1.20361 0.90145 0.95799 1.53736 0.89513 1.27132 1.07241 0.93532 0.90780 1.70171 1.40228 0.99630 1.32882 0.84837 0.73219 0.80286 0.79105 1.16845 1.18655 1.18653 1.19427 1.00854 0.95206 0.96201 1.21307 0.97088 0.97379 0.97284 1.21137 1.00241 0.93790 0.99749 1.20430 0.96726 0.97375 0.93189 1.20863 0.99780 0.92343 1.03826 1.21180 0.97456 0.96366 0.99204 1.20289 0.97667 0.93670 0.94792 1.20881 1.00264 1.01117 0.94780 0.88661 0.91483 0.88269 0.78536 0.90778 0.88128 0.84368 0.90464 0.89769 0.90534 0.83054 0.88482 0.89694 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.70 71.23 0.69 -1.48 16 2 C 0.10 3.56 5.38 45.08 0.24 3.80 16 3 N -0.26 -13.06 11.07 -42.82 -0.47 -13.53 16 4 N -0.60 -31.90 5.98 -180.31 -1.08 -32.97 16 5 C 0.55 34.87 7.67 84.93 0.65 35.52 16 6 O -0.62 -45.21 15.21 -5.05 -0.08 -45.29 16 7 C -0.56 -33.57 9.28 23.44 0.22 -33.35 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 9 C 0.03 1.79 5.50 85.36 0.47 2.26 16 10 N -0.80 -49.92 11.71 21.87 0.26 -49.67 16 11 Si 1.01 40.91 29.56 68.60 2.03 42.94 16 12 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 13 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 14 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 15 C -0.11 -3.66 4.33 -20.11 -0.09 -3.75 16 16 C -0.11 -3.52 8.55 22.60 0.19 -3.33 16 17 C -0.13 -3.34 9.68 22.23 0.22 -3.12 16 18 C -0.08 -1.64 5.89 -19.75 -0.12 -1.76 16 19 C -0.11 -1.56 10.00 71.23 0.71 -0.85 16 20 C -0.12 -2.67 9.31 22.23 0.21 -2.47 16 21 C -0.06 -1.63 5.92 -19.53 -0.12 -1.74 16 22 C -0.11 -2.44 8.63 71.24 0.61 -1.83 16 23 H 0.09 2.13 7.56 -2.39 -0.02 2.11 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.10 2.05 8.11 -2.39 -0.02 2.03 16 26 H 0.38 18.15 6.50 -213.33 -1.39 16.76 16 27 H 0.28 15.58 8.29 -92.71 -0.77 14.81 16 28 H 0.10 3.55 8.06 -2.91 -0.02 3.52 16 29 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.08 0.92 8.08 -2.38 -0.02 0.91 16 33 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.10 1.59 8.12 -2.38 -0.02 1.57 16 35 H 0.08 1.45 8.04 -2.39 -0.02 1.43 16 36 H 0.04 1.22 7.26 -2.39 -0.02 1.21 16 Total: -1.00 -84.21 313.04 4.25 -79.96 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.30 Total: 30.66 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 3.89 Total: -12.10 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -1.30 Total: -96.17 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.08 Total: -45.29 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -84.21 4.25 -79.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038203877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.010 kcal (2) G-P(sol) polarization free energy of solvation -84.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds