Wall clock time and date at job start Mon Mar 30 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37748 * 119.74780 * 2 1 4 4 C 1.39645 * 119.78129 * 179.97438 * 3 2 1 5 5 N 1.35899 * 133.50660 * 180.02562 * 4 3 2 6 6 C 1.30098 * 109.73247 * 179.74437 * 5 4 3 7 7 C 1.50696 * 124.97252 * 180.26990 * 6 5 4 8 8 H 1.09002 * 109.46832 * 166.78435 * 7 6 5 9 9 C 1.52998 * 109.47553 * 286.78840 * 7 6 5 10 10 O 1.42894 * 109.47078 * 46.79176 * 7 6 5 11 11 N 1.36530 * 110.04519 * 0.42412 * 6 5 4 12 12 C 1.37314 * 126.39681 * 179.85245 * 11 6 5 13 13 H 1.08004 * 119.99791 * 323.64489 * 12 11 6 14 14 C 1.38905 * 120.00411 * 143.37650 * 12 11 6 15 15 N 1.31379 * 119.99816 * 342.16620 * 14 12 11 16 16 Si 1.86799 * 120.00102 * 162.17133 * 14 12 11 17 17 H 1.48502 * 109.47386 * 59.99987 * 16 14 12 18 18 H 1.48502 * 109.47057 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47281 * 299.99428 * 16 14 12 20 20 C 1.38388 * 107.21014 * 359.58419 * 11 6 5 21 21 C 1.38673 * 134.05090 * 180.26174 * 20 11 6 22 22 C 1.37989 * 119.83326 * 179.97438 * 21 20 11 23 23 C 1.50703 * 119.78051 * 180.02562 * 22 21 20 24 24 H 1.08993 * 109.47495 * 269.98567 * 1 2 3 25 25 H 1.09007 * 109.46409 * 29.98290 * 1 2 3 26 26 H 1.08997 * 109.47487 * 149.97722 * 1 2 3 27 27 H 1.08004 * 120.10918 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.46953 * 60.00143 * 9 7 6 29 29 H 1.08999 * 109.47260 * 180.02562 * 9 7 6 30 30 H 1.09006 * 109.46910 * 300.00272 * 9 7 6 31 31 H 0.96696 * 114.00172 * 299.99268 * 10 7 6 32 32 H 0.96999 * 120.00178 * 185.22929 * 15 14 12 33 33 H 1.08008 * 120.07812 * 0.02562 * 21 20 11 34 34 H 1.08997 * 109.47047 * 90.00430 * 23 22 21 35 35 H 1.08997 * 109.47473 * 210.00234 * 23 22 21 36 36 H 1.09004 * 109.47219 * 330.00274 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1960 0.0000 4 6 3.5869 1.1968 0.0005 5 7 4.5219 2.1830 0.0011 6 6 5.7128 1.6592 0.0069 7 6 7.0006 2.4418 0.0152 8 1 7.8293 1.7752 0.2537 9 6 7.2278 3.0648 -1.3636 10 8 6.9232 3.4760 0.9982 11 7 5.6248 0.2968 0.0010 12 6 6.6753 -0.5875 0.0016 13 1 7.5758 -0.3567 -0.5483 14 6 6.5821 -1.7764 0.7140 15 7 5.6719 -1.9105 1.6519 16 14 7.7509 -3.1843 0.3385 17 1 9.1498 -2.7399 0.5638 18 1 7.4467 -4.3316 1.2310 19 1 7.5856 -3.6007 -1.0772 20 6 4.2793 -0.0267 0.0004 21 6 3.5748 -1.2211 0.0002 22 6 2.1950 -1.2042 0.0001 23 6 1.4305 -2.5030 0.0004 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3632 0.8902 -0.5136 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6481 2.1299 -0.0004 28 1 6.3990 3.7315 -1.6021 29 1 8.1594 3.6305 -1.3577 30 1 7.2868 2.2759 -2.1135 31 1 6.2065 4.1077 0.8490 32 1 5.6550 -2.7102 2.2005 33 1 4.1048 -2.1622 0.0009 34 1 1.2461 -2.8157 1.0281 35 1 0.4793 -2.3648 -0.5135 36 1 2.0132 -3.2677 -0.5132 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040309347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:38 Heat of formation + Delta-G solvation = 1.343250 kcal Electronic energy + Delta-G solvation = -19706.064560 eV Core-core repulsion = 16769.072226 eV Total energy + Delta-G solvation = -2936.992334 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85788 -37.47786 -36.31522 -34.19149 -31.56846 -31.24109 -30.50810 -29.77838 -26.52693 -25.34820 -24.94645 -22.79999 -20.89258 -20.19296 -19.24988 -17.81166 -16.34215 -15.64731 -15.31986 -14.76449 -14.31747 -14.18685 -14.03764 -13.69766 -13.31657 -12.91068 -12.79314 -12.28288 -12.22721 -11.97643 -11.77583 -11.53245 -11.43980 -11.36919 -11.24359 -10.76822 -10.67315 -10.57659 -10.29098 -9.90950 -9.86028 -9.44583 -8.90893 -8.72043 -7.13932 -6.84521 -6.69227 -4.57332 2.07810 2.65500 2.95340 2.98744 3.00746 3.72027 3.92684 4.46618 4.62481 4.92113 4.97743 5.26733 5.59465 5.61453 5.63917 5.71617 5.79269 5.93425 6.03056 6.07180 6.10308 6.25645 6.35423 6.35923 6.41573 6.47318 6.64076 6.77212 6.84247 6.96476 7.04990 7.19606 7.51080 7.65961 7.85141 8.02893 8.10903 8.14520 8.58350 9.15739 9.34616 10.18289 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.010484 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.893207 B = 2670.019182 C = 4405.310867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.112 4.112 3 C -0.086 4.086 4 C 0.030 3.970 5 N -0.526 5.526 6 C 0.180 3.820 7 C 0.199 3.801 8 H 0.113 0.887 9 C -0.172 4.172 10 O -0.555 6.555 11 N -0.279 5.279 12 C -0.366 4.366 13 H 0.108 0.892 14 C 0.057 3.943 15 N -0.819 5.819 16 Si 0.929 3.071 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.265 1.265 20 C 0.049 3.951 21 C -0.038 4.038 22 C -0.124 4.124 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.379 0.621 32 H 0.283 0.717 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.608 0.536 -3.726 4.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.106 4.106 4 C -0.094 4.094 5 N -0.251 5.251 6 C -0.082 4.082 7 C 0.138 3.862 8 H 0.131 0.869 9 C -0.231 4.231 10 O -0.359 6.359 11 N 0.050 4.950 12 C -0.494 4.494 13 H 0.126 0.874 14 C -0.157 4.157 15 N -0.448 5.448 16 Si 0.753 3.247 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.066 4.066 21 C -0.058 4.058 22 C -0.127 4.127 23 C -0.155 4.155 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.227 0.773 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.192 0.819 -3.342 4.079 hybrid contribution 0.331 -1.391 -0.110 1.434 sum -1.861 -0.572 -3.451 3.963 Atomic orbital electron populations 1.20662 0.92442 1.01495 1.01136 1.19095 0.94573 0.92254 1.05514 1.19660 0.90308 0.96537 1.04049 1.18812 0.93432 0.89201 1.07958 1.69969 0.97306 1.31408 1.26392 1.23934 0.95733 0.82458 1.06046 1.19952 0.91114 0.86940 0.88155 0.86924 1.22409 1.02047 1.01529 0.97093 1.86507 1.56315 1.41000 1.52065 1.41069 1.04100 1.04385 1.45481 1.19603 0.96406 0.99170 1.34198 0.87410 1.25607 0.97292 0.99260 0.93546 1.69989 1.31979 1.28440 1.14388 0.85953 0.80035 0.79426 0.79275 1.18984 1.20124 1.18931 1.18674 0.84296 0.95521 1.08135 1.19813 0.91662 0.95957 0.98353 1.19165 0.92745 0.94024 1.06791 1.20627 0.99064 0.94673 1.01115 0.92408 0.92681 0.92046 0.87397 0.91767 0.91775 0.91727 0.77331 0.90677 0.86673 0.92438 0.92202 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.58 36.00 0.35 -1.17 16 2 C -0.11 -2.23 5.88 -104.64 -0.61 -2.84 16 3 C -0.09 -1.88 9.73 -39.24 -0.38 -2.26 16 4 C 0.03 0.75 7.23 -84.66 -0.61 0.14 16 5 N -0.53 -13.05 11.14 -8.10 -0.09 -13.14 16 6 C 0.18 4.37 6.71 -154.37 -1.04 3.33 16 7 C 0.20 3.96 3.95 -27.89 -0.11 3.85 16 8 H 0.11 2.27 7.29 -51.93 -0.38 1.89 16 9 C -0.17 -2.78 9.52 37.16 0.35 -2.42 16 10 O -0.55 -10.74 13.33 -35.23 -0.47 -11.21 16 11 N -0.28 -7.33 2.84 -56.65 -0.16 -7.49 16 12 C -0.37 -9.27 9.17 -14.85 -0.14 -9.40 16 13 H 0.11 2.51 7.69 -52.48 -0.40 2.11 16 14 C 0.06 1.39 4.59 -17.50 -0.08 1.31 16 15 N -0.82 -21.32 10.72 55.49 0.59 -20.72 16 16 Si 0.93 18.46 29.59 -169.99 -5.03 13.43 16 17 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 18 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 20 C 0.05 1.29 6.13 -83.86 -0.51 0.78 16 21 C -0.04 -0.92 8.24 -39.51 -0.33 -1.24 16 22 C -0.12 -2.60 5.88 -104.55 -0.62 -3.22 16 23 C -0.10 -1.62 9.59 36.01 0.35 -1.28 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.75 8.08 -51.92 -0.42 0.33 16 26 H 0.06 0.82 5.91 -51.93 -0.31 0.52 16 27 H 0.11 2.13 8.06 -52.48 -0.42 1.71 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.38 6.39 8.93 45.56 0.41 6.79 16 32 H 0.28 6.83 8.32 -40.82 -0.34 6.49 16 33 H 0.12 2.87 6.43 -52.48 -0.34 2.53 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.84 5.91 -51.93 -0.31 0.53 16 36 H 0.05 0.85 8.08 -51.93 -0.42 0.44 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -29.85 300.53 -7.85 -37.70 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -3.84 Total: 11.33 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -3.38 Total: -14.43 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.34 Total: -41.35 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.47 Total: -11.21 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.85 -7.85 -37.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040309347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.043 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds