Wall clock time and date at job start Mon Mar 30 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37754 * 119.74150 * 2 1 4 4 C 1.39640 * 119.77474 * 180.02562 * 3 2 1 5 5 N 1.35896 * 133.50414 * 179.97438 * 4 3 2 6 6 C 1.30091 * 109.73846 * 179.97438 * 5 4 3 7 7 C 1.50695 * 124.97823 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.47189 * 194.75173 * 7 6 5 9 9 C 1.53000 * 109.47097 * 74.75507 * 7 6 5 10 10 O 1.42901 * 109.47408 * 314.75400 * 7 6 5 11 11 N 1.36539 * 110.04584 * 359.97438 * 6 5 4 12 12 C 1.37308 * 126.39802 * 179.97438 * 11 6 5 13 13 H 1.08004 * 120.00026 * 39.60712 * 12 11 6 14 14 C 1.38918 * 120.00109 * 219.60651 * 12 11 6 15 15 N 1.31386 * 119.99709 * 203.87643 * 14 12 11 16 16 Si 1.86800 * 119.99952 * 23.59662 * 14 12 11 17 17 H 1.48496 * 109.47343 * 265.45779 * 16 14 12 18 18 H 1.48500 * 109.47186 * 25.46115 * 16 14 12 19 19 H 1.48498 * 109.47017 * 145.45621 * 16 14 12 20 20 C 1.38389 * 107.20532 * 0.23045 * 11 6 5 21 21 C 1.38676 * 134.04877 * 180.44518 * 20 11 6 22 22 C 1.37989 * 119.83387 * 179.61229 * 21 20 11 23 23 C 1.50706 * 119.78229 * 179.72791 * 22 21 20 24 24 H 1.08997 * 109.47414 * 90.00275 * 1 2 3 25 25 H 1.09004 * 109.47477 * 210.00174 * 1 2 3 26 26 H 1.08996 * 109.47137 * 329.99744 * 1 2 3 27 27 H 1.07997 * 120.11148 * 0.04226 * 3 2 1 28 28 H 1.08997 * 109.47001 * 299.58874 * 9 7 6 29 29 H 1.09000 * 109.47572 * 59.59108 * 9 7 6 30 30 H 1.09004 * 109.47322 * 179.59177 * 9 7 6 31 31 H 0.96701 * 113.99780 * 180.02562 * 10 7 6 32 32 H 0.96999 * 119.99230 * 179.72671 * 15 14 12 33 33 H 1.08004 * 120.07750 * 359.33519 * 21 20 11 34 34 H 1.09002 * 109.46673 * 270.01846 * 23 22 21 35 35 H 1.08995 * 109.46989 * 30.01483 * 23 22 21 36 36 H 1.08997 * 109.47134 * 150.01894 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1961 0.0000 4 6 3.5868 1.1969 -0.0005 5 7 4.5217 2.1831 -0.0011 6 6 5.7126 1.6595 -0.0009 7 6 7.0004 2.4422 -0.0020 8 1 7.8270 1.7814 -0.2632 9 6 7.2396 3.0325 1.3892 10 8 6.9146 3.4993 -0.9597 11 7 5.6248 0.2970 0.0004 12 6 6.6754 -0.5872 0.0005 13 1 7.5530 -0.3830 0.5960 14 6 6.6094 -1.7443 -0.7654 15 7 7.3372 -2.7890 -0.4411 16 14 5.4803 -1.8175 -2.2517 17 1 4.1805 -2.4173 -1.8568 18 1 5.2547 -0.4444 -2.7702 19 1 6.1081 -2.6491 -3.3097 20 6 4.2793 -0.0265 -0.0043 21 6 3.5748 -1.2210 0.0022 22 6 2.1950 -1.2042 0.0025 23 6 1.4306 -2.5030 0.0033 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6480 2.1300 0.0007 28 1 6.4166 3.6989 1.6474 29 1 7.2978 2.2267 2.1208 30 1 8.1747 3.5926 1.3904 31 1 7.7107 4.0456 -1.0148 32 1 7.2881 -3.5983 -0.9736 33 1 4.1048 -2.1620 0.0026 34 1 1.2464 -2.8168 -1.0242 35 1 2.0132 -3.2671 0.5177 36 1 0.4793 -2.3643 0.5170 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040309350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:40 Heat of formation + Delta-G solvation = 13.437387 kcal Electronic energy + Delta-G solvation = -19797.767484 eV Core-core repulsion = 16861.299591 eV Total energy + Delta-G solvation = -2936.467893 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17160 -37.67996 -36.51867 -34.17190 -32.03015 -31.60748 -30.82673 -29.91110 -26.65220 -25.57903 -25.03277 -22.99722 -20.99692 -20.40182 -19.12575 -17.92533 -16.87507 -15.91810 -15.60379 -14.96863 -14.44909 -14.36219 -13.91770 -13.84151 -13.48015 -13.23517 -12.81941 -12.70138 -12.43319 -12.21902 -11.97684 -11.66094 -11.60809 -11.26434 -11.17361 -10.91798 -10.76082 -10.41729 -10.35126 -10.04355 -9.81585 -9.57056 -8.95086 -8.78505 -7.30995 -7.10218 -6.96912 -4.62459 1.78441 2.37305 2.96492 3.09379 3.22857 3.61714 3.88176 3.98644 4.47840 4.69581 4.95281 5.08775 5.39534 5.43333 5.52160 5.57703 5.64885 5.73738 5.88538 5.90225 5.98586 6.08355 6.10746 6.20877 6.28333 6.32740 6.45121 6.49544 6.60147 6.67146 6.87426 7.17779 7.35439 7.48157 7.55985 7.81659 7.89923 8.03337 8.53462 8.98700 9.10358 10.08407 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.010453 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.634926 B = 2678.107971 C = 3922.156354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.112 4.112 3 C -0.073 4.073 4 C 0.034 3.966 5 N -0.497 5.497 6 C 0.226 3.774 7 C 0.196 3.804 8 H 0.079 0.921 9 C -0.173 4.173 10 O -0.552 6.552 11 N -0.299 5.299 12 C -0.364 4.364 13 H 0.121 0.879 14 C 0.089 3.911 15 N -0.822 5.822 16 Si 0.863 3.137 17 H -0.242 1.242 18 H -0.258 1.258 19 H -0.280 1.280 20 C 0.013 3.987 21 C -0.085 4.085 22 C -0.106 4.106 23 C -0.104 4.104 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.374 0.626 32 H 0.286 0.714 33 H 0.118 0.882 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 3.123 0.728 5.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 C -0.093 4.093 4 C -0.091 4.091 5 N -0.219 5.219 6 C -0.036 4.036 7 C 0.135 3.865 8 H 0.096 0.904 9 C -0.232 4.232 10 O -0.356 6.356 11 N 0.028 4.972 12 C -0.491 4.491 13 H 0.138 0.862 14 C -0.126 4.126 15 N -0.451 5.451 16 Si 0.687 3.313 17 H -0.166 1.166 18 H -0.182 1.182 19 H -0.206 1.206 20 C -0.101 4.101 21 C -0.105 4.105 22 C -0.109 4.109 23 C -0.160 4.160 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.220 0.780 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.383 3.408 0.618 6.401 hybrid contribution 0.627 -0.902 -0.673 1.289 sum -4.755 2.506 -0.055 5.375 Atomic orbital electron populations 1.20684 0.91905 1.01893 1.01386 1.19179 0.94988 0.92049 1.05251 1.19800 0.90259 0.96906 1.02323 1.18913 0.93713 0.88842 1.07639 1.70209 0.97195 1.30600 1.23922 1.22631 0.94364 0.81363 1.05264 1.19630 0.91107 0.87215 0.88512 0.90375 1.22406 1.01859 1.01830 0.97086 1.86618 1.42687 1.45539 1.60737 1.41339 1.03740 1.04935 1.47182 1.19222 0.97842 1.00997 1.31026 0.86189 1.25346 0.96114 0.93833 0.97324 1.69767 1.37507 1.01656 1.36186 0.87096 0.81519 0.80682 0.81994 1.16646 1.18208 1.20631 1.18876 0.84978 0.96235 1.10052 1.19875 0.92836 0.95513 1.02279 1.19149 0.92245 0.94484 1.04994 1.20699 0.99442 0.94462 1.01432 0.92179 0.91782 0.92327 0.86668 0.91227 0.91520 0.92124 0.77999 0.90340 0.86368 0.92183 0.92258 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 9.59 36.01 0.35 -1.07 16 2 C -0.11 -2.10 5.88 -104.63 -0.61 -2.71 16 3 C -0.07 -1.53 9.73 -39.24 -0.38 -1.91 16 4 C 0.03 0.83 7.22 -84.66 -0.61 0.21 16 5 N -0.50 -12.53 11.26 -8.11 -0.09 -12.62 16 6 C 0.23 5.49 6.72 -154.37 -1.04 4.45 16 7 C 0.20 3.80 3.93 -27.89 -0.11 3.69 16 8 H 0.08 1.49 7.40 -51.92 -0.38 1.10 16 9 C -0.17 -2.76 9.52 37.16 0.35 -2.41 16 10 O -0.55 -10.05 13.29 -35.23 -0.47 -10.51 16 11 N -0.30 -7.74 2.45 -56.64 -0.14 -7.88 16 12 C -0.36 -9.58 9.52 -14.85 -0.14 -9.72 16 13 H 0.12 3.17 7.98 -52.48 -0.42 2.75 16 14 C 0.09 2.31 4.92 -17.49 -0.09 2.22 16 15 N -0.82 -21.57 13.95 55.49 0.77 -20.79 16 16 Si 0.86 20.80 24.53 -169.99 -4.17 16.63 16 17 H -0.24 -5.55 5.45 56.52 0.31 -5.24 16 18 H -0.26 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.01 0.33 5.25 -83.86 -0.44 -0.11 16 21 C -0.08 -1.97 6.54 -39.51 -0.26 -2.23 16 22 C -0.11 -2.10 5.88 -104.54 -0.62 -2.72 16 23 C -0.10 -1.61 9.59 36.01 0.35 -1.27 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.78 5.91 -51.93 -0.31 0.48 16 26 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.37 4.40 9.08 45.56 0.41 4.81 16 32 H 0.29 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.12 2.80 5.81 -52.48 -0.31 2.49 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.89 8.08 -51.93 -0.42 0.48 16 36 H 0.07 0.85 5.91 -51.93 -0.31 0.55 16 LS Contribution 294.75 15.07 4.44 4.44 Total: -1.00 -31.43 294.75 -6.82 -38.25 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.91 Total: 6.06 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -3.25 Total: -13.58 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.54 Total: -41.29 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.47 Total: -10.51 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.17 Total: 16.63 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.43 -6.82 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040309350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.685 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds