Wall clock time and date at job start Mon Mar 30 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37754 * 119.74150 * 2 1 4 4 C 1.39640 * 119.77474 * 180.02562 * 3 2 1 5 5 N 1.35896 * 133.50414 * 179.97438 * 4 3 2 6 6 C 1.30091 * 109.73846 * 179.97438 * 5 4 3 7 7 C 1.50695 * 124.97823 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.47189 * 194.75173 * 7 6 5 9 9 C 1.53000 * 109.47097 * 74.75507 * 7 6 5 10 10 O 1.42901 * 109.47408 * 314.75400 * 7 6 5 11 11 N 1.36539 * 110.04584 * 359.97438 * 6 5 4 12 12 C 1.37308 * 126.39802 * 179.97438 * 11 6 5 13 13 H 1.08004 * 120.00026 * 39.60712 * 12 11 6 14 14 C 1.38918 * 120.00109 * 219.60651 * 12 11 6 15 15 N 1.31386 * 119.99709 * 203.87643 * 14 12 11 16 16 Si 1.86800 * 119.99952 * 23.59662 * 14 12 11 17 17 H 1.48496 * 109.47343 * 265.45779 * 16 14 12 18 18 H 1.48500 * 109.47186 * 25.46115 * 16 14 12 19 19 H 1.48498 * 109.47017 * 145.45621 * 16 14 12 20 20 C 1.38389 * 107.20532 * 0.23045 * 11 6 5 21 21 C 1.38676 * 134.04877 * 180.44518 * 20 11 6 22 22 C 1.37989 * 119.83387 * 179.61229 * 21 20 11 23 23 C 1.50706 * 119.78229 * 179.72791 * 22 21 20 24 24 H 1.08997 * 109.47414 * 90.00275 * 1 2 3 25 25 H 1.09004 * 109.47477 * 210.00174 * 1 2 3 26 26 H 1.08996 * 109.47137 * 329.99744 * 1 2 3 27 27 H 1.07997 * 120.11148 * 0.04226 * 3 2 1 28 28 H 1.08997 * 109.47001 * 299.58874 * 9 7 6 29 29 H 1.09000 * 109.47572 * 59.59108 * 9 7 6 30 30 H 1.09004 * 109.47322 * 179.59177 * 9 7 6 31 31 H 0.96701 * 113.99780 * 180.02562 * 10 7 6 32 32 H 0.96999 * 119.99230 * 179.72671 * 15 14 12 33 33 H 1.08004 * 120.07750 * 359.33519 * 21 20 11 34 34 H 1.09002 * 109.46673 * 270.01846 * 23 22 21 35 35 H 1.08995 * 109.46989 * 30.01483 * 23 22 21 36 36 H 1.08997 * 109.47134 * 150.01894 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1961 0.0000 4 6 3.5868 1.1969 -0.0005 5 7 4.5217 2.1831 -0.0011 6 6 5.7126 1.6595 -0.0009 7 6 7.0004 2.4422 -0.0020 8 1 7.8270 1.7814 -0.2632 9 6 7.2396 3.0325 1.3892 10 8 6.9146 3.4993 -0.9597 11 7 5.6248 0.2970 0.0004 12 6 6.6754 -0.5872 0.0005 13 1 7.5530 -0.3830 0.5960 14 6 6.6094 -1.7443 -0.7654 15 7 7.3372 -2.7890 -0.4411 16 14 5.4803 -1.8175 -2.2517 17 1 4.1805 -2.4173 -1.8568 18 1 5.2547 -0.4444 -2.7702 19 1 6.1081 -2.6491 -3.3097 20 6 4.2793 -0.0265 -0.0043 21 6 3.5748 -1.2210 0.0022 22 6 2.1950 -1.2042 0.0025 23 6 1.4306 -2.5030 0.0033 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6480 2.1300 0.0007 28 1 6.4166 3.6989 1.6474 29 1 7.2978 2.2267 2.1208 30 1 8.1747 3.5926 1.3904 31 1 7.7107 4.0456 -1.0148 32 1 7.2881 -3.5983 -0.9736 33 1 4.1048 -2.1620 0.0026 34 1 1.2464 -2.8168 -1.0242 35 1 2.0132 -3.2671 0.5177 36 1 0.4793 -2.3643 0.5170 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040309350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:39 Heat of formation + Delta-G solvation = -8.556313 kcal Electronic energy + Delta-G solvation = -19798.721203 eV Core-core repulsion = 16861.299591 eV Total energy + Delta-G solvation = -2937.421612 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.95046 -39.24137 -37.99701 -36.07123 -33.88283 -33.11709 -32.39355 -31.33752 -28.16197 -27.08151 -26.86561 -24.46209 -22.66759 -22.10712 -20.90750 -19.76817 -18.36822 -17.72072 -17.21504 -16.68242 -16.16374 -15.97936 -15.54973 -15.32027 -15.07288 -14.91672 -14.46027 -14.33520 -13.65044 -13.57681 -13.39625 -13.17914 -12.99817 -12.91715 -12.82790 -12.42264 -12.20686 -12.10571 -12.02452 -11.78074 -11.54747 -11.03734 -10.82399 -10.67491 -9.03816 -8.94974 -8.81346 -6.62647 0.07810 0.70574 1.05609 1.13573 1.25334 1.83009 1.95403 2.25151 2.57822 2.96919 3.32274 3.61387 3.83671 4.00502 4.07180 4.16561 4.24080 4.35373 4.48463 4.61720 4.69847 4.78478 4.80830 4.84350 4.91694 5.00454 5.02867 5.05390 5.18927 5.25160 5.33998 5.44517 5.62865 5.79054 5.87356 5.92976 6.19829 6.56765 6.89096 7.12757 7.25439 8.14865 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.010453 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.634926 B = 2678.107971 C = 3922.156354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.101 4.101 3 C -0.085 4.085 4 C 0.003 3.997 5 N -0.518 5.518 6 C 0.213 3.787 7 C 0.195 3.805 8 H 0.076 0.924 9 C -0.160 4.160 10 O -0.568 6.568 11 N -0.321 5.321 12 C -0.376 4.376 13 H 0.106 0.894 14 C 0.067 3.933 15 N -0.849 5.849 16 Si 0.906 3.094 17 H -0.225 1.225 18 H -0.297 1.297 19 H -0.265 1.265 20 C -0.013 4.013 21 C -0.119 4.119 22 C -0.095 4.095 23 C -0.105 4.105 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.136 0.864 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.401 0.599 32 H 0.294 0.706 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 3.047 0.607 7.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C -0.105 4.105 4 C -0.120 4.120 5 N -0.241 5.241 6 C -0.049 4.049 7 C 0.134 3.866 8 H 0.093 0.907 9 C -0.218 4.218 10 O -0.376 6.376 11 N 0.004 4.996 12 C -0.503 4.503 13 H 0.124 0.876 14 C -0.146 4.146 15 N -0.479 5.479 16 Si 0.730 3.270 17 H -0.148 1.148 18 H -0.223 1.223 19 H -0.190 1.190 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.098 4.098 23 C -0.161 4.161 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.154 0.846 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.252 0.748 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.808 3.318 0.502 8.498 hybrid contribution 1.241 -0.778 -0.607 1.585 sum -6.567 2.540 -0.106 7.042 Atomic orbital electron populations 1.20799 0.87587 1.03999 1.03168 1.19797 0.97889 0.90643 1.02069 1.20233 0.88987 0.98977 1.02289 1.19521 0.95280 0.88580 1.08631 1.70197 0.97787 1.31129 1.24945 1.23598 0.95912 0.81442 1.03984 1.19727 0.88732 0.87469 0.90631 0.90657 1.22302 1.03720 1.01401 0.94377 1.86544 1.44957 1.45577 1.60558 1.41431 1.03885 1.05374 1.48899 1.19143 0.98057 1.01748 1.31380 0.87640 1.25682 0.96925 0.93634 0.98348 1.69773 1.38726 1.02193 1.37218 0.86501 0.81660 0.78511 0.80353 1.14808 1.22341 1.19019 1.19360 0.85035 0.97455 1.10795 1.20038 0.94414 0.94323 1.05206 1.19801 0.91287 0.97138 1.01526 1.20840 1.00327 0.91946 1.02961 0.90323 0.89404 0.90628 0.84571 0.92125 0.92650 0.87708 0.74804 0.89493 0.87614 0.90596 0.92109 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.24 9.59 71.24 0.68 -1.56 16 2 C -0.10 -3.49 5.88 -19.87 -0.12 -3.61 16 3 C -0.09 -3.46 9.73 22.49 0.22 -3.24 16 4 C 0.00 0.15 7.22 39.42 0.28 0.43 16 5 N -0.52 -26.72 11.26 -179.56 -2.02 -28.74 16 6 C 0.21 10.71 6.72 137.76 0.93 11.64 16 7 C 0.20 7.70 3.93 29.85 0.12 7.82 16 8 H 0.08 2.97 7.40 -2.38 -0.02 2.95 16 9 C -0.16 -5.03 9.52 71.98 0.69 -4.34 16 10 O -0.57 -20.54 13.29 -148.98 -1.98 -22.52 16 11 N -0.32 -17.29 2.45 -333.11 -0.81 -18.11 16 12 C -0.38 -20.72 9.52 84.00 0.80 -19.92 16 13 H 0.11 5.91 7.98 -2.91 -0.02 5.88 16 14 C 0.07 3.57 4.92 84.92 0.42 3.99 16 15 N -0.85 -45.46 13.95 21.65 0.30 -45.16 16 16 Si 0.91 43.85 24.53 68.60 1.68 45.53 16 17 H -0.22 -10.09 5.45 99.48 0.54 -9.55 16 18 H -0.30 -16.22 7.11 99.48 0.71 -15.51 16 19 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.01 -0.70 5.25 38.78 0.20 -0.49 16 21 C -0.12 -5.55 6.54 22.32 0.15 -5.40 16 22 C -0.10 -3.56 5.88 -19.81 -0.12 -3.68 16 23 C -0.10 -2.83 9.59 71.24 0.68 -2.15 16 24 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.09 1.60 5.91 -2.38 -0.01 1.59 16 26 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 27 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.40 8.92 9.08 -74.06 -0.67 8.24 16 32 H 0.29 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.11 5.08 5.81 -2.91 -0.02 5.06 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.65 8.08 -2.39 -0.02 1.63 16 36 H 0.10 2.03 5.91 -2.39 -0.01 2.02 16 Total: -1.00 -71.36 294.75 2.37 -69.00 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.27 Total: 20.51 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.93 Total: -20.52 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -2.53 Total: -92.00 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -1.98 Total: -22.52 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.68 Total: 45.53 kcal Total: -71.36 2.37 -69.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040309350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.440 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds