Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36010 * 117.00250 * 2 1 4 4 C 1.38698 * 119.98069 * 180.02562 * 3 2 1 5 5 C 1.38111 * 120.01632 * 180.02562 * 4 3 2 6 6 C 1.38855 * 119.98396 * 359.97363 * 5 4 3 7 7 N 1.39933 * 120.02366 * 180.02562 * 6 5 4 8 8 C 1.46493 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.50706 * 109.47492 * 269.99975 * 8 7 6 10 10 H 1.08004 * 119.99292 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00653 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99582 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00141 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47121 * 90.00123 * 13 11 9 15 15 H 1.48507 * 109.47183 * 210.00184 * 13 11 9 16 16 H 1.48498 * 109.47234 * 330.00117 * 13 11 9 17 17 C 1.46506 * 120.00226 * 179.97438 * 7 6 5 18 18 C 1.52997 * 109.47289 * 270.00318 * 17 7 6 19 19 C 1.47196 * 109.47172 * 180.02562 * 18 17 7 20 20 N 8.88743 * 90.09181 * 350.68224 * 2 1 3 21 21 C 1.38871 * 119.95945 * 0.27633 * 6 5 4 22 22 C 1.38110 * 119.97622 * 359.47194 * 21 6 5 23 23 H 1.09004 * 109.47224 * 300.00248 * 1 2 3 24 24 H 1.08999 * 109.47235 * 60.00141 * 1 2 3 25 25 H 1.08998 * 109.47310 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99417 * 0.02562 * 4 3 2 27 27 H 1.07998 * 120.00954 * 179.97438 * 5 4 3 28 28 H 1.09006 * 109.47571 * 29.99650 * 8 7 6 29 29 H 1.09005 * 109.47727 * 150.00107 * 8 7 6 30 30 H 0.97002 * 119.99852 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.47060 * 30.00587 * 17 7 6 32 32 H 1.09004 * 109.47073 * 150.00076 * 17 7 6 33 33 H 1.09001 * 109.46832 * 299.99854 * 18 17 7 34 34 H 1.08996 * 109.46952 * 59.99873 * 18 17 7 35 35 H 1.07997 * 120.01070 * 179.70318 * 21 6 5 36 36 H 1.08007 * 119.98934 * 180.25028 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0594 2.5140 0.0000 6 6 3.3036 3.6789 0.0005 7 7 3.9389 4.9257 0.0005 8 6 5.4018 5.0024 -0.0006 9 6 5.9047 5.0281 1.4199 10 1 5.2044 4.9907 2.2413 11 6 7.2585 5.0985 1.6708 12 7 8.1112 5.1436 0.6705 13 14 7.8816 5.1311 3.4315 14 1 8.1194 3.7416 3.8982 15 1 9.1518 5.8981 3.4929 16 1 6.8691 5.7796 4.3030 17 6 3.1410 6.1544 0.0005 18 6 2.8631 6.5821 -1.4420 19 6 2.0620 7.8170 -1.4419 20 7 1.4432 8.7702 -1.4390 21 6 1.9169 3.6058 0.0063 22 6 1.2907 2.3748 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 4.0194 0.3778 -0.0014 27 1 5.1380 2.5700 0.0000 28 1 5.8109 4.1328 -0.5151 29 1 5.7177 5.9104 -0.5143 30 1 9.0637 5.1935 0.8470 31 1 2.1967 5.9744 0.5144 32 1 3.6895 6.9439 0.5143 33 1 3.8074 6.7621 -1.9558 34 1 2.3146 5.7927 -1.9557 35 1 1.3282 4.5112 0.0116 36 1 0.2122 2.3177 0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041251304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = 20.479495 kcal Electronic energy + Delta-G solvation = -18708.857773 eV Core-core repulsion = 15772.695249 eV Total energy + Delta-G solvation = -2936.162525 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69495 -38.05989 -36.62026 -35.16335 -32.95422 -31.31168 -30.53928 -28.65622 -27.42880 -26.12287 -24.02562 -22.52007 -21.61797 -19.86015 -17.87722 -17.47647 -16.51440 -16.19255 -15.81353 -15.40451 -14.89095 -14.72942 -14.10127 -13.88164 -13.80451 -13.15628 -13.00957 -12.63959 -12.41748 -12.24301 -12.17069 -12.01842 -11.75851 -11.49761 -11.22153 -11.08321 -10.83822 -10.72469 -10.67183 -10.29482 -9.92785 -9.74671 -8.64614 -8.54049 -8.47013 -6.46684 -6.05591 -4.21553 1.86612 2.17198 2.83485 2.88993 3.25102 3.32313 3.35357 3.65859 3.81363 4.29565 4.40054 4.46580 5.11205 5.16622 5.18491 5.25537 5.28258 5.31899 5.37328 5.52806 5.62090 5.83471 5.87802 5.96188 6.19668 6.22730 6.42572 6.57788 6.81041 6.85727 7.10190 7.20561 7.29366 7.65324 7.76120 7.83032 8.08901 8.16165 8.35762 8.87396 9.46038 10.91194 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.006981 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.138229 B = 4010.008799 C = 5923.423046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.327 6.327 3 C 0.045 3.955 4 C -0.102 4.102 5 C -0.144 4.144 6 C 0.208 3.792 7 N -0.612 5.612 8 C 0.250 3.750 9 C -0.534 4.534 10 H 0.060 0.940 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.135 3.865 18 C -0.052 4.052 19 C 0.219 3.781 20 N -0.452 5.452 21 C -0.183 4.183 22 C -0.161 4.161 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.207 -5.699 -3.307 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.242 6.242 3 C -0.001 4.001 4 C -0.121 4.121 5 C -0.166 4.166 6 C 0.104 3.896 7 N -0.319 5.319 8 C 0.130 3.870 9 C -0.572 4.572 10 H 0.078 0.922 11 C -0.139 4.139 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.199 1.199 17 C 0.008 3.992 18 C -0.094 4.094 19 C -0.099 4.099 20 N -0.130 5.130 21 C -0.206 4.206 22 C -0.180 4.180 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.720 -4.263 -3.341 12.911 hybrid contribution 0.457 -0.158 1.005 1.115 sum -11.263 -4.421 -2.337 12.323 Atomic orbital electron populations 1.22861 0.79821 1.02823 1.00745 1.86014 1.20134 1.27616 1.90409 1.18692 0.92195 0.83610 1.05570 1.20175 0.90958 0.97927 1.03087 1.20787 1.00876 0.89826 1.05093 1.17837 0.90881 0.86409 0.94478 1.47011 1.07092 1.00323 1.77514 1.19310 0.72516 0.98118 0.97010 1.21586 0.91783 1.51125 0.92752 0.92165 1.24934 0.96753 0.94952 0.97270 1.69916 1.02574 1.50086 1.30710 0.86553 0.78241 0.78213 0.84792 1.20510 1.21209 1.19919 1.21069 0.96794 0.88927 0.92396 1.19983 0.98797 0.88267 1.02367 1.29265 0.93313 0.94495 0.92851 1.81203 1.10855 1.11915 1.08994 1.20396 0.92785 0.97064 1.10374 1.20790 0.98769 0.92029 1.06408 0.93343 0.93347 0.89196 0.85994 0.84067 0.94459 0.94938 0.92618 0.91115 0.89613 0.86903 0.87473 0.86444 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.33 16 2 O -0.33 -4.78 10.50 -19.77 -0.21 -4.98 16 3 C 0.04 0.71 6.69 -39.24 -0.26 0.44 16 4 C -0.10 -1.71 9.98 -39.46 -0.39 -2.10 16 5 C -0.14 -2.62 9.20 -39.40 -0.36 -2.98 16 6 C 0.21 3.64 6.55 -83.70 -0.55 3.09 16 7 N -0.61 -10.96 2.60 -173.06 -0.45 -11.41 16 8 C 0.25 5.51 4.91 -5.19 -0.03 5.48 16 9 C -0.53 -13.44 9.39 -34.44 -0.32 -13.76 16 10 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 13 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.13 1.96 5.12 -4.04 -0.02 1.94 16 18 C -0.05 -0.61 6.03 -29.52 -0.18 -0.79 16 19 C 0.22 2.91 15.43 -20.75 -0.32 2.59 16 20 N -0.45 -7.14 18.54 42.17 0.78 -6.36 16 21 C -0.18 -2.78 9.21 -39.39 -0.36 -3.14 16 22 C -0.16 -2.34 9.03 -39.46 -0.36 -2.69 16 23 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.14 2.81 6.14 -52.49 -0.32 2.48 16 28 H 0.04 0.87 6.20 -51.93 -0.32 0.55 16 29 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.07 0.94 6.19 -51.93 -0.32 0.62 16 32 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.12 1.55 6.13 -52.49 -0.32 1.23 16 36 H 0.12 1.38 6.29 -52.48 -0.33 1.05 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -28.73 313.61 -6.18 -34.91 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.49 Total: 0.23 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -2.26 Total: -9.05 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 1.07 Total: -41.32 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.21 Total: -4.98 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.73 -6.18 -34.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.393 kcal (2) G-P(sol) polarization free energy of solvation -28.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds