Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36010 * 117.00250 * 2 1 4 4 C 1.38698 * 119.98069 * 180.02562 * 3 2 1 5 5 C 1.38111 * 120.01632 * 180.02562 * 4 3 2 6 6 C 1.38855 * 119.98396 * 359.97363 * 5 4 3 7 7 N 1.39933 * 120.02366 * 180.02562 * 6 5 4 8 8 C 1.46493 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.50706 * 109.47492 * 269.99975 * 8 7 6 10 10 H 1.08004 * 119.99292 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00653 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99582 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00141 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47121 * 90.00123 * 13 11 9 15 15 H 1.48507 * 109.47183 * 210.00184 * 13 11 9 16 16 H 1.48498 * 109.47234 * 330.00117 * 13 11 9 17 17 C 1.46506 * 120.00226 * 179.97438 * 7 6 5 18 18 C 1.52997 * 109.47289 * 270.00318 * 17 7 6 19 19 C 1.47196 * 109.47172 * 180.02562 * 18 17 7 20 20 N 8.88743 * 90.09181 * 350.68224 * 2 1 3 21 21 C 1.38871 * 119.95945 * 0.27633 * 6 5 4 22 22 C 1.38110 * 119.97622 * 359.47194 * 21 6 5 23 23 H 1.09004 * 109.47224 * 300.00248 * 1 2 3 24 24 H 1.08999 * 109.47235 * 60.00141 * 1 2 3 25 25 H 1.08998 * 109.47310 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99417 * 0.02562 * 4 3 2 27 27 H 1.07998 * 120.00954 * 179.97438 * 5 4 3 28 28 H 1.09006 * 109.47571 * 29.99650 * 8 7 6 29 29 H 1.09005 * 109.47727 * 150.00107 * 8 7 6 30 30 H 0.97002 * 119.99852 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.47060 * 30.00587 * 17 7 6 32 32 H 1.09004 * 109.47073 * 150.00076 * 17 7 6 33 33 H 1.09001 * 109.46832 * 299.99854 * 18 17 7 34 34 H 1.08996 * 109.46952 * 59.99873 * 18 17 7 35 35 H 1.07997 * 120.01070 * 179.70318 * 21 6 5 36 36 H 1.08007 * 119.98934 * 180.25028 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0594 2.5140 0.0000 6 6 3.3036 3.6789 0.0005 7 7 3.9389 4.9257 0.0005 8 6 5.4018 5.0024 -0.0006 9 6 5.9047 5.0281 1.4199 10 1 5.2044 4.9907 2.2413 11 6 7.2585 5.0985 1.6708 12 7 8.1112 5.1436 0.6705 13 14 7.8816 5.1311 3.4315 14 1 8.1194 3.7416 3.8982 15 1 9.1518 5.8981 3.4929 16 1 6.8691 5.7796 4.3030 17 6 3.1410 6.1544 0.0005 18 6 2.8631 6.5821 -1.4420 19 6 2.0620 7.8170 -1.4419 20 7 1.4432 8.7702 -1.4390 21 6 1.9169 3.6058 0.0063 22 6 1.2907 2.3748 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 4.0194 0.3778 -0.0014 27 1 5.1380 2.5700 0.0000 28 1 5.8109 4.1328 -0.5151 29 1 5.7177 5.9104 -0.5143 30 1 9.0637 5.1935 0.8470 31 1 2.1967 5.9744 0.5144 32 1 3.6895 6.9439 0.5143 33 1 3.8074 6.7621 -1.9558 34 1 2.3146 5.7927 -1.9557 35 1 1.3282 4.5112 0.0116 36 1 0.2122 2.3177 0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041251304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = 5.168220 kcal Electronic energy + Delta-G solvation = -18709.521720 eV Core-core repulsion = 15772.695249 eV Total energy + Delta-G solvation = -2936.826471 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89426 -39.26961 -37.76104 -36.47371 -34.78253 -32.62673 -31.74796 -30.09717 -28.64007 -27.36964 -25.50634 -23.97714 -22.87347 -21.18800 -19.04345 -18.71673 -18.24593 -17.55048 -17.03807 -16.45256 -16.37536 -15.98501 -15.37315 -15.18847 -15.09502 -14.42970 -14.32004 -14.06804 -13.60141 -13.54078 -13.46038 -13.24628 -13.02613 -12.91445 -12.72841 -12.56283 -12.31358 -12.09388 -11.99695 -11.78503 -11.52172 -11.25992 -10.54151 -10.00098 -9.74034 -8.24666 -7.60971 -6.25815 0.60881 0.90858 1.41593 1.44210 1.52321 1.73611 1.82392 2.38803 2.54476 2.70294 3.10245 3.16524 3.28653 4.01460 4.13575 4.18944 4.22924 4.46117 4.54306 4.57287 4.64638 4.69459 4.82850 4.83758 4.92775 5.09877 5.13660 5.28463 5.32498 5.46619 5.61637 5.65415 5.78586 5.96295 6.19351 6.55399 6.60102 6.72069 6.93522 7.01306 7.45673 8.91103 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.006981 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.138229 B = 4010.008799 C = 5923.423046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.345 6.345 3 C 0.045 3.955 4 C -0.115 4.115 5 C -0.166 4.166 6 C 0.189 3.811 7 N -0.617 5.617 8 C 0.266 3.734 9 C -0.537 4.537 10 H 0.050 0.950 11 C 0.017 3.983 12 N -0.924 5.924 13 Si 0.949 3.051 14 H -0.279 1.279 15 H -0.283 1.283 16 H -0.271 1.271 17 C 0.133 3.867 18 C -0.037 4.037 19 C 0.245 3.755 20 N -0.493 5.493 21 C -0.171 4.171 22 C -0.154 4.154 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.111 0.889 28 H 0.017 0.983 29 H 0.022 0.978 30 H 0.264 0.736 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.592 -6.129 -3.085 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.260 6.260 3 C 0.000 4.000 4 C -0.135 4.135 5 C -0.189 4.189 6 C 0.086 3.914 7 N -0.326 5.326 8 C 0.145 3.855 9 C -0.576 4.576 10 H 0.068 0.932 11 C -0.182 4.182 12 N -0.564 5.564 13 Si 0.775 3.225 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.196 1.196 17 C 0.008 3.992 18 C -0.079 4.079 19 C -0.072 4.072 20 N -0.171 5.171 21 C -0.193 4.193 22 C -0.173 4.173 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.131 0.869 26 H 0.143 0.857 27 H 0.129 0.871 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.146 -4.703 -3.118 15.230 hybrid contribution 1.091 -0.151 0.932 1.443 sum -13.055 -4.853 -2.186 14.099 Atomic orbital electron populations 1.23212 0.77265 1.04919 1.01844 1.86000 1.22780 1.27002 1.90178 1.18789 0.91919 0.84758 1.04555 1.20233 0.92101 0.97477 1.03646 1.20625 0.99670 0.91243 1.07322 1.17997 0.91993 0.85686 0.95678 1.46755 1.05572 1.01696 1.78556 1.18822 0.75325 0.96488 0.94899 1.21867 0.91732 1.50001 0.94007 0.93192 1.25609 0.97174 0.95028 1.00401 1.70006 1.02705 1.51421 1.32286 0.85695 0.77729 0.78051 0.81020 1.20451 1.20886 1.19596 1.21160 0.96734 0.87158 0.94160 1.19888 0.99124 0.88100 1.00746 1.29338 0.92285 0.94014 0.91557 1.81240 1.12441 1.13166 1.10299 1.20656 0.91598 0.98515 1.08557 1.21150 1.00424 0.91066 1.04669 0.92329 0.91954 0.86884 0.85734 0.87057 0.96472 0.96015 0.92655 0.89260 0.91131 0.86491 0.85088 0.83780 0.83248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.34 -9.24 10.50 -93.66 -0.98 -10.22 16 3 C 0.05 1.35 6.69 22.49 0.15 1.50 16 4 C -0.12 -3.86 9.98 22.35 0.22 -3.64 16 5 C -0.17 -6.21 9.20 22.39 0.21 -6.00 16 6 C 0.19 6.47 6.55 38.15 0.25 6.72 16 7 N -0.62 -21.91 2.60 -701.44 -1.82 -23.73 16 8 C 0.27 12.06 4.91 85.64 0.42 12.48 16 9 C -0.54 -27.62 9.39 25.60 0.24 -27.38 16 10 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 11 C 0.02 0.91 5.46 84.65 0.46 1.37 16 12 N -0.92 -51.32 13.29 21.45 0.28 -51.04 16 13 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 14 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 C 0.13 3.66 5.12 86.38 0.44 4.10 16 18 C -0.04 -0.79 6.03 28.79 0.17 -0.61 16 19 C 0.25 6.04 15.43 89.44 1.38 7.42 16 20 N -0.49 -14.87 18.54 20.01 0.37 -14.50 16 21 C -0.17 -4.67 9.21 22.39 0.21 -4.46 16 22 C -0.15 -3.94 9.03 22.35 0.20 -3.74 16 23 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 24 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 25 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 27 H 0.11 4.75 6.14 -2.91 -0.02 4.74 16 28 H 0.02 0.85 6.20 -2.38 -0.01 0.84 16 29 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 30 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.09 2.11 6.19 -2.39 -0.01 2.10 16 32 H 0.07 2.15 8.07 -2.38 -0.02 2.13 16 33 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.14 3.14 6.13 -2.91 -0.02 3.12 16 36 H 0.15 2.80 6.29 -2.91 -0.02 2.79 16 Total: -1.00 -62.58 313.61 6.43 -56.15 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.09 Total: 9.59 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 5.47 Total: -10.76 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -1.17 Total: -89.27 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.98 Total: -10.22 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -62.58 6.43 -56.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.319 kcal (2) G-P(sol) polarization free energy of solvation -62.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds