Wall clock time and date at job start Mon Mar 30 2020 06:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46830 * 2 1 4 4 O 1.42904 * 109.47034 * 240.00261 * 2 1 3 5 5 C 1.35936 * 116.99763 * 205.05785 * 4 2 1 6 6 C 1.39573 * 119.75087 * 354.28813 * 5 4 2 7 7 C 1.37861 * 120.52589 * 179.68869 * 6 5 4 8 8 C 1.38746 * 119.96128 * 0.61591 * 7 6 5 9 9 C 1.41364 * 119.96160 * 359.66074 * 8 7 6 10 10 C 1.37743 * 119.75016 * 174.56298 * 5 4 2 11 11 N 1.33975 * 107.54322 * 180.02562 * 9 8 7 12 12 C 1.32490 * 109.79427 * 359.97438 * 11 9 8 13 13 C 1.40154 * 125.30112 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00509 * 180.02562 * 13 12 11 15 15 C 1.40352 * 120.00115 * 0.02884 * 13 12 11 16 16 N 1.30590 * 119.99376 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00309 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47477 * 59.99510 * 17 15 13 19 19 H 1.48505 * 109.47285 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46947 * 299.99683 * 17 15 13 21 21 N 1.37829 * 109.40284 * 0.02562 * 12 11 9 22 22 C 1.46497 * 126.53768 * 180.02562 * 21 12 11 23 23 H 1.09001 * 109.46926 * 59.99997 * 1 2 3 24 24 H 1.09001 * 109.46944 * 300.00048 * 1 2 3 25 25 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46897 * 120.00085 * 2 1 3 27 27 H 1.09003 * 109.46716 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47368 * 299.99732 * 3 2 1 29 29 H 1.09001 * 109.47396 * 60.00228 * 3 2 1 30 30 H 1.08006 * 119.73681 * 359.97438 * 6 5 4 31 31 H 1.07991 * 120.02272 * 180.25832 * 7 6 5 32 32 H 1.08000 * 120.14777 * 359.97420 * 10 5 4 33 33 H 0.97004 * 119.99930 * 180.02562 * 16 15 13 34 34 H 1.09007 * 109.47217 * 89.97593 * 22 21 12 35 35 H 1.09000 * 109.47175 * 209.97389 * 22 21 12 36 36 H 1.08996 * 109.47474 * 329.97162 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 3.2465 -1.2259 -1.0975 6 6 4.0360 -1.0159 0.0342 7 6 5.2935 -1.5737 0.1242 8 6 5.7879 -2.3402 -0.9213 9 6 4.9987 -2.5543 -2.0745 10 6 3.7169 -1.9839 -2.1471 11 7 5.7096 -3.3190 -2.9140 12 6 6.8868 -3.6016 -2.3759 13 6 7.8859 -4.3800 -2.9761 14 1 8.8169 -4.5569 -2.4581 15 6 7.6765 -4.9296 -4.2505 16 7 6.5506 -4.7160 -4.8766 17 14 9.0077 -5.9676 -5.0502 18 1 9.2975 -7.1461 -4.1945 19 1 8.5430 -6.4271 -6.3837 20 1 10.2409 -5.1553 -5.2081 21 7 6.9761 -3.0109 -1.1338 22 6 8.1148 -3.0805 -0.2147 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.6568 -0.4154 0.8480 31 1 5.8957 -1.4094 1.0054 32 1 3.1028 -2.1394 -3.0218 33 1 6.4057 -5.0961 -5.7572 34 1 8.7961 -2.2541 -0.4170 35 1 7.7571 -3.0133 0.8127 36 1 8.6384 -4.0260 -0.3559 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074318857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:51 Heat of formation + Delta-G solvation = 3.052667 kcal Electronic energy + Delta-G solvation = -19006.975813 eV Core-core repulsion = 16070.057605 eV Total energy + Delta-G solvation = -2936.918208 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.17792 -40.44520 -36.96123 -35.39759 -34.36172 -33.86971 -30.58185 -30.40427 -28.27292 -27.59681 -27.04478 -23.62058 -23.20003 -21.45981 -21.27272 -19.19725 -18.49514 -17.64139 -17.33017 -16.38326 -16.32154 -16.04900 -15.80611 -14.89055 -14.76380 -14.44253 -14.21403 -13.76499 -13.71802 -13.48429 -13.34989 -13.05829 -12.96283 -12.89785 -12.81061 -12.54355 -12.17389 -12.08642 -11.97844 -11.48178 -11.42327 -10.90978 -10.65623 -9.85187 -8.92622 -8.51635 -8.44298 -6.59202 0.39915 0.95644 1.42199 1.48146 1.57785 2.16218 2.31048 2.38431 2.52346 3.11132 3.56630 3.89708 3.97948 4.11163 4.16292 4.21002 4.29381 4.47550 4.55575 4.61709 4.68089 4.73600 4.76291 4.90411 4.90787 4.94816 5.11414 5.14511 5.22587 5.32377 5.36950 5.57782 5.61159 5.86094 6.00004 6.11816 6.38253 6.71826 6.82753 7.18588 8.03157 8.40643 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.037010 B = 0.004800 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.374570 B = 5831.840330 C = 6452.365305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 C -0.174 4.174 4 O -0.334 6.334 5 C 0.133 3.867 6 C -0.238 4.238 7 C -0.062 4.062 8 C -0.048 4.048 9 C 0.097 3.903 10 C -0.199 4.199 11 N -0.589 5.589 12 C 0.392 3.608 13 C -0.465 4.465 14 H 0.109 0.891 15 C 0.028 3.972 16 N -0.768 5.768 17 Si 1.006 2.994 18 H -0.252 1.252 19 H -0.272 1.272 20 H -0.252 1.252 21 N -0.549 5.549 22 C 0.098 3.902 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.285 0.715 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 6.224 10.719 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 C -0.232 4.232 4 O -0.249 6.249 5 C 0.086 3.914 6 C -0.259 4.259 7 C -0.083 4.083 8 C -0.155 4.155 9 C -0.030 4.030 10 C -0.221 4.221 11 N -0.315 5.315 12 C 0.155 3.845 13 C -0.502 4.502 14 H 0.127 0.873 15 C -0.195 4.195 16 N -0.390 5.390 17 Si 0.824 3.176 18 H -0.176 1.176 19 H -0.197 1.197 20 H -0.176 1.176 21 N -0.247 5.247 22 C -0.044 4.044 23 H 0.080 0.920 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.663 5.931 9.713 11.688 hybrid contribution 0.655 -0.197 0.080 0.689 sum -2.007 5.734 9.793 11.524 Atomic orbital electron populations 1.21875 0.91222 1.02979 1.03969 1.22725 0.96325 0.93058 0.87003 1.22357 1.01669 0.95373 1.03765 1.86048 1.29377 1.68996 1.40499 1.18262 0.84981 0.94056 0.94106 1.20858 0.95657 1.09876 0.99508 1.19811 0.95919 0.96614 0.95987 1.19223 0.90085 1.06155 1.00045 1.19556 0.94571 0.96836 0.92084 1.19056 0.95275 1.07460 1.00346 1.71262 1.05361 1.24920 1.29918 1.20853 0.92611 0.90757 0.80289 1.19036 1.00754 1.28181 1.02232 0.87311 1.27083 0.98794 0.96757 0.96838 1.70132 1.24617 1.32132 1.12161 0.84919 0.77128 0.78165 0.77368 1.17580 1.19687 1.17630 1.45564 1.14267 1.47089 1.17738 1.21746 0.86904 1.03175 0.92568 0.91970 0.87751 0.92478 0.90329 0.92869 0.92268 0.88367 0.82681 0.84221 0.88512 0.90488 0.91726 0.89375 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.56 71.98 0.69 -2.10 16 2 C 0.06 1.63 2.84 30.60 0.09 1.71 16 3 C -0.17 -3.71 9.16 71.98 0.66 -3.05 16 4 O -0.33 -12.32 9.79 -92.83 -0.91 -13.23 16 5 C 0.13 5.62 6.59 22.48 0.15 5.77 16 6 C -0.24 -8.69 8.23 22.50 0.19 -8.50 16 7 C -0.06 -2.42 10.03 22.30 0.22 -2.20 16 8 C -0.05 -2.38 6.88 39.05 0.27 -2.11 16 9 C 0.10 5.49 7.20 40.14 0.29 5.78 16 10 C -0.20 -10.26 10.04 22.70 0.23 -10.04 16 11 N -0.59 -36.75 9.33 -186.56 -1.74 -38.49 16 12 C 0.39 22.35 7.41 133.68 0.99 23.34 16 13 C -0.46 -24.49 8.99 23.25 0.21 -24.28 16 14 H 0.11 4.99 7.09 -2.91 -0.02 4.97 16 15 C 0.03 1.43 5.50 85.39 0.47 1.90 16 16 N -0.77 -43.28 11.85 21.89 0.26 -43.02 16 17 Si 1.01 36.90 29.56 68.60 2.03 38.93 16 18 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 19 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 20 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 21 N -0.55 -26.55 3.26 -536.12 -1.75 -28.30 16 22 C 0.10 3.35 10.93 127.77 1.40 4.75 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.85 6.30 -2.39 -0.02 1.83 16 27 H 0.05 1.27 6.89 -2.39 -0.02 1.26 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.16 4.32 5.37 -2.91 -0.02 4.31 16 31 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.10 5.14 8.06 -2.91 -0.02 5.12 16 33 H 0.28 14.50 8.29 -92.71 -0.77 13.73 16 34 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.08 2.67 7.32 -2.39 -0.02 2.65 16 Total: -1.00 -74.04 302.85 4.82 -69.23 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 1.08 Total: 23.92 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.84 Total: -9.04 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -3.23 Total: -109.81 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.91 Total: -13.23 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -74.04 4.82 -69.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074318857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.278 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds