Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 115.56104 * 2 1 4 4 C 1.52997 * 117.49878 * 214.31396 * 2 1 3 5 5 C 1.52999 * 117.49726 * 145.68928 * 2 1 3 6 6 H 1.08991 * 117.51940 * 0.02562 * 5 2 1 7 7 N 1.46502 * 117.49670 * 214.97682 * 5 2 1 8 8 C 1.34778 * 119.99488 * 154.98571 * 7 5 2 9 9 O 1.21575 * 120.00258 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99531 * 180.02562 * 8 7 5 11 11 C 1.39244 * 119.99696 * 175.52215 * 10 8 7 12 12 C 1.39478 * 119.83114 * 215.84423 * 11 10 8 13 13 C 1.36374 * 120.16700 * 179.97438 * 12 11 10 14 14 C 1.40864 * 119.82910 * 359.97438 * 13 12 11 15 15 C 1.41153 * 120.16292 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00388 * 335.27469 * 15 14 13 17 17 C 1.39893 * 120.00041 * 154.99647 * 15 14 13 18 18 N 1.30881 * 119.99948 * 345.09578 * 17 15 14 19 19 Si 1.86798 * 120.00326 * 165.09410 * 17 15 14 20 20 H 1.48500 * 109.47300 * 89.99788 * 19 17 15 21 21 H 1.48495 * 109.47466 * 210.00096 * 19 17 15 22 22 H 1.48506 * 109.46952 * 330.00088 * 19 17 15 23 23 C 1.40870 * 119.67298 * 0.28272 * 14 13 12 24 24 C 1.36370 * 119.82593 * 359.43793 * 23 14 13 25 25 H 1.08995 * 109.47419 * 274.30697 * 1 2 3 26 26 H 1.08998 * 109.47000 * 34.31213 * 1 2 3 27 27 H 1.09004 * 109.46925 * 154.30494 * 1 2 3 28 28 H 1.08996 * 117.50169 * 145.01881 * 4 2 1 29 29 H 1.08999 * 117.52059 * 359.97438 * 4 2 1 30 30 H 0.96996 * 120.00343 * 334.99164 * 7 5 2 31 31 H 0.96995 * 120.00146 * 355.52437 * 10 8 7 32 32 H 1.08005 * 119.91463 * 359.97438 * 12 11 10 33 33 H 1.08001 * 120.08361 * 180.02562 * 13 12 11 34 34 H 0.97000 * 120.00085 * 180.02562 * 18 17 15 35 35 H 1.08001 * 120.08351 * 179.72211 * 23 14 13 36 36 H 1.08004 * 119.91787 * 180.27294 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 1.6116 -1.8588 1.2680 7 7 3.4933 -0.7906 1.4414 8 6 3.8986 -1.5165 2.5022 9 8 3.2215 -2.4456 2.8975 10 7 5.0546 -1.2122 3.1248 11 6 5.4275 -1.9010 4.2761 12 6 6.0934 -1.2295 5.3013 13 6 6.4614 -1.8973 6.4320 14 6 6.1668 -3.2686 6.5631 15 6 6.5440 -3.9666 7.7306 16 1 7.3692 -3.6107 8.3297 17 6 5.8452 -5.1160 8.1148 18 7 4.6815 -5.3841 7.5791 19 14 6.5730 -6.2682 9.3923 20 1 6.1314 -5.8483 10.7465 21 1 6.1111 -7.6547 9.1287 22 1 8.0553 -6.2177 9.3172 23 6 5.4989 -3.9411 5.5210 24 6 5.1322 -3.2586 4.3987 25 1 -0.3634 0.0772 1.0247 26 1 -0.3633 0.8488 -0.5793 27 1 -0.3633 -0.9261 -0.4456 28 1 3.1715 -0.8751 -1.2683 29 1 1.6116 -1.8588 -1.2681 30 1 4.0336 -0.0494 1.1259 31 1 5.6267 -0.5134 2.7710 32 1 6.3182 -0.1780 5.1995 33 1 6.9766 -1.3760 7.2252 34 1 4.1968 -6.1808 7.8458 35 1 5.2738 -4.9934 5.6126 36 1 4.6161 -3.7718 3.6007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076033696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = 14.830174 kcal Electronic energy + Delta-G solvation = -18392.181359 eV Core-core repulsion = 15455.773862 eV Total energy + Delta-G solvation = -2936.407497 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.94755 -38.09536 -36.97302 -34.36393 -33.26918 -32.49159 -29.42078 -28.95494 -28.17118 -24.93642 -22.50493 -21.29155 -20.96266 -20.83131 -19.92749 -17.89447 -17.26166 -16.84055 -15.70991 -15.18478 -14.76928 -14.33321 -13.91767 -13.75369 -13.55909 -13.14143 -12.90580 -12.63034 -12.13749 -12.00461 -11.80912 -11.67746 -11.46490 -11.15725 -11.01734 -10.88351 -10.45296 -10.20426 -9.97800 -9.84066 -9.48631 -9.16110 -8.65931 -8.55349 -7.45564 -6.93552 -6.66414 -4.24281 2.71864 2.97298 3.10458 3.11494 3.15532 3.20012 3.53045 3.94064 3.97971 4.54298 4.69396 4.70604 4.74095 4.89651 5.12008 5.55401 5.60035 5.64553 5.75682 5.83735 5.89276 6.08836 6.19785 6.45914 6.65159 6.88333 6.91707 7.10952 7.16650 7.35224 7.41646 7.68392 7.91049 8.07364 8.12077 8.32922 8.53546 8.70222 8.94707 8.98354 9.16661 10.25827 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.040501 B = 0.003786 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.172832 B = 7394.747697 C = 7825.344245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.168 4.168 3 H 0.103 0.897 4 C -0.195 4.195 5 C 0.112 3.888 6 H 0.138 0.862 7 N -0.724 5.724 8 C 0.696 3.304 9 O -0.573 6.573 10 N -0.666 5.666 11 C 0.010 3.990 12 C -0.106 4.106 13 C -0.216 4.216 14 C 0.104 3.896 15 C -0.459 4.459 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.792 5.792 19 Si 0.909 3.091 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.156 4.156 24 C -0.086 4.086 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.392 0.608 31 H 0.390 0.610 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.280 0.720 35 H 0.122 0.878 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 8.240 -12.440 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.188 4.188 3 H 0.121 0.879 4 C -0.234 4.234 5 C 0.005 3.995 6 H 0.156 0.844 7 N -0.378 5.378 8 C 0.397 3.603 9 O -0.449 6.449 10 N -0.312 5.312 11 C -0.082 4.082 12 C -0.127 4.127 13 C -0.236 4.236 14 C 0.101 3.899 15 C -0.489 4.489 16 H 0.095 0.905 17 C -0.145 4.145 18 N -0.417 5.417 19 Si 0.733 3.267 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.176 4.176 24 C -0.106 4.106 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.226 0.774 31 H 0.223 0.777 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.938 7.192 -12.019 14.550 hybrid contribution 0.750 0.336 0.192 0.844 sum -3.188 7.528 -11.827 14.378 Atomic orbital electron populations 1.21339 0.92337 1.01973 1.02186 1.22818 0.95877 0.95002 1.05127 0.87871 1.23643 1.02567 1.01505 0.95696 1.21480 0.87403 1.00450 0.90193 0.84437 1.44509 1.24131 1.35939 1.33237 1.15985 0.81662 0.82812 0.79825 1.90924 1.56324 1.30827 1.66801 1.42062 1.20469 1.40504 1.28160 1.17004 1.11502 0.91743 0.87992 1.20028 1.02290 0.96894 0.93485 1.20531 1.10481 0.94773 0.97811 1.17671 0.89427 0.90492 0.92270 1.19528 1.14332 1.07497 1.07541 0.90514 1.25933 0.93800 0.97778 0.96973 1.69856 1.10106 1.24273 1.37463 0.86309 0.80534 0.79266 0.80560 1.19570 1.20132 1.18530 1.21067 1.03799 1.00213 0.92478 1.20583 0.99271 0.92067 0.98697 0.91912 0.92188 0.92294 0.88780 0.88150 0.77439 0.77712 0.89339 0.88701 0.90868 0.85991 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.19 37.16 0.38 -0.62 16 2 C -0.17 -1.57 6.33 -90.62 -0.57 -2.14 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.20 -1.86 10.10 -26.73 -0.27 -2.13 16 5 C 0.11 1.39 6.15 -67.93 -0.42 0.97 16 6 H 0.14 2.02 7.40 -51.93 -0.38 1.63 16 7 N -0.72 -9.76 5.57 -58.68 -0.33 -10.08 16 8 C 0.70 13.04 8.39 -86.91 -0.73 12.31 16 9 O -0.57 -13.45 13.35 5.30 0.07 -13.38 16 10 N -0.67 -12.14 5.31 -14.10 -0.07 -12.22 16 11 C 0.01 0.23 6.30 -83.57 -0.53 -0.29 16 12 C -0.11 -2.38 9.90 -39.79 -0.39 -2.78 16 13 C -0.22 -5.33 9.74 -39.26 -0.38 -5.71 16 14 C 0.10 2.84 5.58 -106.80 -0.60 2.25 16 15 C -0.46 -12.38 9.05 -37.86 -0.34 -12.72 16 16 H 0.08 1.96 7.89 -52.48 -0.41 1.55 16 17 C 0.07 1.87 5.19 -17.34 -0.09 1.78 16 18 N -0.79 -21.26 10.82 55.54 0.60 -20.66 16 19 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 23 C -0.16 -4.27 8.63 -39.26 -0.34 -4.60 16 24 C -0.09 -2.21 8.61 -39.79 -0.34 -2.56 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 30 H 0.39 3.94 8.84 -40.82 -0.36 3.58 16 31 H 0.39 5.44 8.83 -40.82 -0.36 5.08 16 32 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.28 6.86 8.30 -40.82 -0.34 6.53 16 35 H 0.12 3.47 6.09 -52.49 -0.32 3.15 16 36 H 0.11 2.79 6.25 -52.48 -0.33 2.47 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -31.49 308.36 -9.40 -40.89 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -4.67 Total: 13.06 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -4.62 Total: -16.24 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.20 Total: -42.95 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.07 Total: -13.38 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.49 -9.40 -40.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076033696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.721 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds