Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 115.56104 * 2 1 4 4 C 1.52997 * 117.49878 * 214.31396 * 2 1 3 5 5 C 1.52999 * 117.49726 * 145.68928 * 2 1 3 6 6 H 1.08991 * 117.51940 * 0.02562 * 5 2 1 7 7 N 1.46502 * 117.49670 * 214.97682 * 5 2 1 8 8 C 1.34778 * 119.99488 * 154.98571 * 7 5 2 9 9 O 1.21575 * 120.00258 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99531 * 180.02562 * 8 7 5 11 11 C 1.39244 * 119.99696 * 175.52215 * 10 8 7 12 12 C 1.39478 * 119.83114 * 215.84423 * 11 10 8 13 13 C 1.36374 * 120.16700 * 179.97438 * 12 11 10 14 14 C 1.40864 * 119.82910 * 359.97438 * 13 12 11 15 15 C 1.41153 * 120.16292 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00388 * 335.27469 * 15 14 13 17 17 C 1.39893 * 120.00041 * 154.99647 * 15 14 13 18 18 N 1.30881 * 119.99948 * 345.09578 * 17 15 14 19 19 Si 1.86798 * 120.00326 * 165.09410 * 17 15 14 20 20 H 1.48500 * 109.47300 * 89.99788 * 19 17 15 21 21 H 1.48495 * 109.47466 * 210.00096 * 19 17 15 22 22 H 1.48506 * 109.46952 * 330.00088 * 19 17 15 23 23 C 1.40870 * 119.67298 * 0.28272 * 14 13 12 24 24 C 1.36370 * 119.82593 * 359.43793 * 23 14 13 25 25 H 1.08995 * 109.47419 * 274.30697 * 1 2 3 26 26 H 1.08998 * 109.47000 * 34.31213 * 1 2 3 27 27 H 1.09004 * 109.46925 * 154.30494 * 1 2 3 28 28 H 1.08996 * 117.50169 * 145.01881 * 4 2 1 29 29 H 1.08999 * 117.52059 * 359.97438 * 4 2 1 30 30 H 0.96996 * 120.00343 * 334.99164 * 7 5 2 31 31 H 0.96995 * 120.00146 * 355.52437 * 10 8 7 32 32 H 1.08005 * 119.91463 * 359.97438 * 12 11 10 33 33 H 1.08001 * 120.08361 * 180.02562 * 13 12 11 34 34 H 0.97000 * 120.00085 * 180.02562 * 18 17 15 35 35 H 1.08001 * 120.08351 * 179.72211 * 23 14 13 36 36 H 1.08004 * 119.91787 * 180.27294 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 1.6116 -1.8588 1.2680 7 7 3.4933 -0.7906 1.4414 8 6 3.8986 -1.5165 2.5022 9 8 3.2215 -2.4456 2.8975 10 7 5.0546 -1.2122 3.1248 11 6 5.4275 -1.9010 4.2761 12 6 6.0934 -1.2295 5.3013 13 6 6.4614 -1.8973 6.4320 14 6 6.1668 -3.2686 6.5631 15 6 6.5440 -3.9666 7.7306 16 1 7.3692 -3.6107 8.3297 17 6 5.8452 -5.1160 8.1148 18 7 4.6815 -5.3841 7.5791 19 14 6.5730 -6.2682 9.3923 20 1 6.1314 -5.8483 10.7465 21 1 6.1111 -7.6547 9.1287 22 1 8.0553 -6.2177 9.3172 23 6 5.4989 -3.9411 5.5210 24 6 5.1322 -3.2586 4.3987 25 1 -0.3634 0.0772 1.0247 26 1 -0.3633 0.8488 -0.5793 27 1 -0.3633 -0.9261 -0.4456 28 1 3.1715 -0.8751 -1.2683 29 1 1.6116 -1.8588 -1.2681 30 1 4.0336 -0.0494 1.1259 31 1 5.6267 -0.5134 2.7710 32 1 6.3182 -0.1780 5.1995 33 1 6.9766 -1.3760 7.2252 34 1 4.1968 -6.1808 7.8458 35 1 5.2738 -4.9934 5.6126 36 1 4.6161 -3.7718 3.6007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076033696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = -5.379981 kcal Electronic energy + Delta-G solvation = -18393.057737 eV Core-core repulsion = 15455.773862 eV Total energy + Delta-G solvation = -2937.283876 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43228 -39.49730 -38.43073 -36.15059 -34.89405 -33.93544 -31.37395 -30.71658 -29.06039 -26.77512 -23.86169 -23.09806 -22.38687 -21.81879 -21.42079 -19.40192 -19.18421 -18.24882 -17.17780 -16.87604 -16.28216 -15.76328 -15.65787 -14.91793 -14.83212 -14.52691 -14.32216 -13.94145 -13.69892 -13.66826 -13.34327 -12.91926 -12.79134 -12.68125 -12.44516 -12.29570 -12.02412 -11.76882 -11.72361 -11.28965 -11.08075 -10.94175 -10.48777 -9.67844 -9.42577 -8.80995 -8.57315 -6.25258 0.88341 1.16973 1.38992 1.47842 1.55086 1.69938 2.12902 2.22841 2.78471 2.96615 3.31898 3.76596 3.78939 3.93723 4.07932 4.43332 4.45544 4.50993 4.69622 4.92391 4.93868 4.96338 5.03741 5.11752 5.18670 5.20262 5.32612 5.39763 5.45389 5.59351 5.70106 5.81815 6.11565 6.14650 6.21952 6.38250 6.71592 6.95249 7.04476 7.17309 7.67402 8.36926 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.040501 B = 0.003786 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.172832 B = 7394.747697 C = 7825.344245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.144 4.144 3 H 0.122 0.878 4 C -0.176 4.176 5 C 0.070 3.930 6 H 0.106 0.894 7 N -0.699 5.699 8 C 0.692 3.308 9 O -0.627 6.627 10 N -0.656 5.656 11 C 0.024 3.976 12 C -0.099 4.099 13 C -0.222 4.222 14 C 0.071 3.929 15 C -0.494 4.494 16 H 0.082 0.918 17 C 0.027 3.973 18 N -0.832 5.832 19 Si 0.987 3.013 20 H -0.261 1.261 21 H -0.270 1.270 22 H -0.255 1.255 23 C -0.180 4.180 24 C -0.101 4.101 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.413 0.587 31 H 0.415 0.585 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 10.470 -13.579 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.164 4.164 3 H 0.140 0.860 4 C -0.215 4.215 5 C -0.037 4.037 6 H 0.123 0.877 7 N -0.354 5.354 8 C 0.393 3.607 9 O -0.507 6.507 10 N -0.304 5.304 11 C -0.070 4.070 12 C -0.120 4.120 13 C -0.242 4.242 14 C 0.069 3.931 15 C -0.523 4.523 16 H 0.100 0.900 17 C -0.187 4.187 18 N -0.459 5.459 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.195 1.195 22 H -0.178 1.178 23 C -0.201 4.201 24 C -0.122 4.122 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.250 0.750 31 H 0.252 0.748 32 H 0.153 0.847 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.332 9.505 -13.232 16.629 hybrid contribution 0.477 -0.228 0.364 0.642 sum -2.856 9.277 -12.868 16.119 Atomic orbital electron populations 1.21404 0.91701 1.03040 1.02042 1.22923 0.96348 0.95017 1.02084 0.86002 1.23718 1.03305 1.01461 0.92992 1.21556 0.87365 1.02806 0.91963 0.87653 1.44206 1.24462 1.35378 1.31357 1.16196 0.81326 0.82549 0.80623 1.90903 1.57861 1.33358 1.68567 1.41793 1.20977 1.40642 1.26961 1.17052 1.09675 0.90849 0.89461 1.20385 1.00661 0.98877 0.92031 1.20827 1.10263 0.93949 0.99211 1.18016 0.90448 0.92073 0.92587 1.19830 1.15238 1.09129 1.08121 0.89963 1.26884 0.93707 0.98967 0.99093 1.69951 1.11554 1.25090 1.39271 0.85137 0.79725 0.76774 0.77629 1.18576 1.19506 1.17827 1.20951 1.05764 0.99524 0.93818 1.20599 0.99811 0.93772 0.98003 0.92845 0.90156 0.92101 0.87240 0.87431 0.74962 0.74754 0.84724 0.87022 0.90395 0.88400 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 10.19 71.98 0.73 -1.06 16 2 C -0.14 -2.28 6.33 -10.79 -0.07 -2.35 16 3 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16 4 C -0.18 -2.88 10.10 30.59 0.31 -2.57 16 5 C 0.07 1.66 6.15 44.99 0.28 1.93 16 6 H 0.11 3.22 7.40 -2.39 -0.02 3.21 16 7 N -0.70 -17.62 5.57 -457.82 -2.55 -20.17 16 8 C 0.69 25.58 8.39 179.05 1.50 27.08 16 9 O -0.63 -30.42 13.35 -3.95 -0.05 -30.47 16 10 N -0.66 -22.78 5.31 -316.78 -1.68 -24.47 16 11 C 0.02 1.07 6.30 38.56 0.24 1.31 16 12 C -0.10 -4.25 9.90 22.13 0.22 -4.03 16 13 C -0.22 -10.87 9.74 22.48 0.22 -10.65 16 14 C 0.07 4.01 5.58 -21.28 -0.12 3.89 16 15 C -0.49 -27.35 9.05 23.39 0.21 -27.14 16 16 H 0.08 4.28 7.89 -2.91 -0.02 4.26 16 17 C 0.03 1.44 5.19 85.24 0.44 1.88 16 18 N -0.83 -46.73 10.82 21.82 0.24 -46.49 16 19 Si 0.99 39.63 29.59 68.60 2.03 41.66 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 23 C -0.18 -10.42 8.63 22.48 0.19 -10.23 16 24 C -0.10 -5.42 8.61 22.13 0.19 -5.23 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.85 7.90 -2.38 -0.02 0.83 16 28 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.11 1.63 8.05 -2.39 -0.02 1.61 16 30 H 0.41 6.93 8.84 -92.71 -0.82 6.11 16 31 H 0.42 10.20 8.83 -92.71 -0.82 9.38 16 32 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 34 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 35 H 0.10 6.00 6.09 -2.91 -0.02 5.98 16 36 H 0.09 5.17 6.25 -2.91 -0.02 5.15 16 Total: -1.00 -72.63 308.36 1.81 -70.82 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.53 Total: 36.27 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.35 Total: -27.15 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -4.00 Total: -91.13 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -72.63 1.81 -70.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076033696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.441 kcal (2) G-P(sol) polarization free energy of solvation -72.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds