Wall clock time and date at job start Mon Mar 30 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 115.56382 * 2 1 4 4 C 1.53078 * 117.51364 * 145.70464 * 2 1 3 5 5 C 1.53006 * 59.98486 * 107.47662 * 4 2 1 6 6 H 1.09002 * 117.49888 * 107.49809 * 5 4 2 7 7 N 1.46503 * 117.49664 * 252.50174 * 5 4 2 8 8 C 1.34774 * 119.99347 * 223.74600 * 7 5 4 9 9 O 1.21582 * 120.00438 * 359.97438 * 8 7 5 10 10 N 1.34784 * 119.99483 * 180.02562 * 8 7 5 11 11 C 1.39241 * 119.99738 * 184.40275 * 10 8 7 12 12 C 1.39478 * 119.83504 * 324.34318 * 11 10 8 13 13 C 1.36376 * 120.16648 * 179.75713 * 12 11 10 14 14 C 1.40868 * 119.83036 * 0.51499 * 13 12 11 15 15 C 1.41157 * 120.16786 * 179.76425 * 14 13 12 16 16 H 1.07997 * 120.00290 * 148.74725 * 15 14 13 17 17 C 1.39896 * 119.99720 * 328.74566 * 15 14 13 18 18 N 1.30879 * 120.00283 * 167.76374 * 17 15 14 19 19 Si 1.86808 * 120.00019 * 347.76475 * 17 15 14 20 20 H 1.48497 * 109.47130 * 92.59732 * 19 17 15 21 21 H 1.48500 * 109.46921 * 212.60146 * 19 17 15 22 22 H 1.48500 * 109.46848 * 332.59602 * 19 17 15 23 23 C 1.40869 * 119.66908 * 359.73565 * 14 13 12 24 24 C 1.36374 * 119.83212 * 0.02562 * 23 14 13 25 25 H 1.09004 * 109.47001 * 205.68861 * 1 2 3 26 26 H 1.09003 * 109.46820 * 325.68586 * 1 2 3 27 27 H 1.08997 * 109.47137 * 85.68407 * 1 2 3 28 28 H 1.08998 * 117.51326 * 0.02562 * 4 2 1 29 29 H 1.08998 * 117.51245 * 214.95173 * 4 2 1 30 30 H 0.96998 * 120.00169 * 43.74409 * 7 5 4 31 31 H 0.96998 * 119.99826 * 4.68027 * 10 8 7 32 32 H 1.07995 * 119.91995 * 359.97438 * 12 11 10 33 33 H 1.08004 * 120.08840 * 180.24971 * 13 12 11 34 34 H 0.97002 * 120.00196 * 179.97438 * 18 17 15 35 35 H 1.08002 * 120.08456 * 180.02562 * 23 14 13 36 36 H 1.07992 * 119.91810 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 0.7650 5 6 2.2365 -1.1210 -0.7651 6 1 3.1713 -0.8750 -1.2687 7 7 1.3960 -2.1122 -1.4415 8 6 1.8766 -2.7925 -2.5010 9 8 3.0074 -2.5833 -2.8958 10 7 1.1033 -3.7040 -3.1237 11 6 1.6290 -4.4720 -4.1593 12 6 2.5545 -3.9105 -5.0388 13 6 3.0775 -4.6580 -6.0525 14 6 2.6726 -5.9972 -6.2166 15 6 3.2056 -6.7759 -7.2664 16 1 3.3289 -7.8413 -7.1396 17 6 3.5740 -6.1675 -8.4711 18 7 4.2824 -6.8307 -9.3493 19 14 3.0550 -4.4085 -8.8261 20 1 4.1229 -3.4778 -8.3807 21 1 2.8311 -4.2434 -10.2849 22 1 1.7982 -4.1062 -8.0952 23 6 1.7335 -6.5557 -5.3274 24 6 1.2229 -5.7973 -4.3155 25 1 -0.3633 -0.9261 0.4455 26 1 -0.3633 0.8488 0.5793 27 1 -0.3633 0.0773 -1.0247 28 1 1.6124 -1.8597 1.2679 29 1 3.1725 -0.8761 1.2679 30 1 0.4938 -2.2788 -1.1268 31 1 0.1794 -3.8222 -2.8530 32 1 2.8604 -2.8823 -4.9147 33 1 3.7971 -4.2231 -6.7304 34 1 4.5375 -6.4090 -10.1848 35 1 1.4186 -7.5819 -5.4468 36 1 0.5026 -6.2239 -3.6333 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076033697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:18 Heat of formation + Delta-G solvation = 17.283687 kcal Electronic energy + Delta-G solvation = -18588.899237 eV Core-core repulsion = 15652.598132 eV Total energy + Delta-G solvation = -2936.301105 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.15465 -38.34361 -37.21303 -34.44131 -33.28499 -32.57026 -29.90401 -29.39860 -28.64974 -24.91445 -22.50352 -21.78477 -21.48484 -20.27650 -20.10534 -18.28465 -17.39630 -16.89537 -15.92416 -15.27773 -14.99930 -14.81240 -14.14089 -13.79794 -13.59097 -13.38791 -12.81063 -12.58758 -12.55585 -12.48992 -12.23059 -11.91953 -11.71940 -11.29887 -11.03347 -10.77007 -10.30126 -10.22463 -10.19562 -9.71679 -9.56440 -9.37127 -8.86972 -8.69145 -7.75014 -7.12226 -6.87718 -4.39880 2.48407 2.73848 2.86376 3.16726 3.25440 3.34044 3.39773 3.81880 4.03770 4.44096 4.48015 4.57173 4.70891 4.76364 5.01401 5.43561 5.46887 5.47637 5.58995 5.69946 5.79172 5.94200 5.97329 6.19913 6.46016 6.51733 6.69412 6.78675 6.92501 7.03439 7.21385 7.47434 7.64469 7.68944 7.92091 8.12414 8.33178 8.39118 8.66234 8.83746 8.96535 10.14440 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.039547 B = 0.004245 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.846476 B = 6594.559979 C = 6893.785691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.170 4.170 3 H 0.110 0.890 4 C -0.194 4.194 5 C 0.111 3.889 6 H 0.138 0.862 7 N -0.721 5.721 8 C 0.698 3.302 9 O -0.575 6.575 10 N -0.667 5.667 11 C 0.011 3.989 12 C -0.062 4.062 13 C -0.228 4.228 14 C 0.087 3.913 15 C -0.443 4.443 16 H 0.091 0.909 17 C 0.081 3.919 18 N -0.815 5.815 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.294 1.294 22 H -0.244 1.244 23 C -0.196 4.196 24 C -0.096 4.096 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.393 0.607 31 H 0.392 0.608 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.285 0.715 35 H 0.104 0.896 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 10.906 14.891 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.190 4.190 3 H 0.128 0.872 4 C -0.233 4.233 5 C 0.003 3.997 6 H 0.156 0.844 7 N -0.375 5.375 8 C 0.399 3.601 9 O -0.452 6.452 10 N -0.313 5.313 11 C -0.082 4.082 12 C -0.082 4.082 13 C -0.247 4.247 14 C 0.083 3.917 15 C -0.472 4.472 16 H 0.109 0.891 17 C -0.137 4.137 18 N -0.440 5.440 19 Si 0.742 3.258 20 H -0.197 1.197 21 H -0.222 1.222 22 H -0.167 1.167 23 C -0.216 4.216 24 C -0.116 4.116 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.227 0.773 31 H 0.226 0.774 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.330 10.992 14.262 19.441 hybrid contribution -0.959 0.559 0.151 1.120 sum -8.288 11.552 14.413 20.245 Atomic orbital electron populations 1.21302 0.92866 1.01907 1.02058 1.22854 0.95801 0.95191 1.05119 0.87188 1.23615 1.02956 1.01205 0.95552 1.21442 0.96554 0.91289 0.90383 0.84430 1.44448 1.17434 1.42819 1.32807 1.15955 0.84664 0.79816 0.79667 1.90911 1.18406 1.68715 1.67160 1.42031 1.13406 1.39517 1.36315 1.16916 1.07084 0.90874 0.93278 1.20473 0.95967 0.99063 0.92747 1.20717 1.05794 0.96620 1.01592 1.17804 0.89489 0.91596 0.92761 1.19462 1.34039 0.97279 0.96432 0.89143 1.26163 0.91514 1.00188 0.95804 1.69679 1.26770 1.39314 1.08244 0.86282 0.81836 0.81545 0.76088 1.19665 1.22188 1.16687 1.20578 1.01653 0.99516 0.99875 1.20145 1.01041 0.91748 0.98716 0.92652 0.91973 0.91950 0.88653 0.88150 0.77273 0.77434 0.86923 0.88011 0.90509 0.87748 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.19 37.16 0.34 -0.53 16 2 C -0.17 -1.42 6.41 -90.58 -0.58 -2.00 16 3 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.19 -1.70 10.11 -26.69 -0.27 -1.97 16 5 C 0.11 1.25 6.40 -67.92 -0.44 0.82 16 6 H 0.14 1.82 7.40 -51.93 -0.38 1.44 16 7 N -0.72 -8.85 5.35 -58.67 -0.31 -9.16 16 8 C 0.70 12.03 8.39 -86.91 -0.73 11.30 16 9 O -0.58 -12.49 13.35 5.29 0.07 -12.42 16 10 N -0.67 -11.14 5.31 -14.10 -0.07 -11.21 16 11 C 0.01 0.24 6.30 -83.57 -0.53 -0.29 16 12 C -0.06 -1.49 8.61 -39.79 -0.34 -1.83 16 13 C -0.23 -5.80 6.93 -39.26 -0.27 -6.07 16 14 C 0.09 2.25 5.13 -106.80 -0.55 1.70 16 15 C -0.44 -12.21 9.59 -37.85 -0.36 -12.57 16 16 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 17 C 0.08 2.18 5.47 -17.34 -0.09 2.09 16 18 N -0.82 -22.24 13.93 55.55 0.77 -21.47 16 19 Si 0.91 21.60 24.40 -169.99 -4.15 17.45 16 20 H -0.27 -6.31 6.67 56.52 0.38 -5.93 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.24 -5.84 6.67 56.52 0.38 -5.47 16 23 C -0.20 -4.54 9.74 -39.26 -0.38 -4.92 16 24 C -0.10 -1.98 9.90 -39.79 -0.39 -2.37 16 25 H 0.05 0.35 7.61 -51.93 -0.40 -0.05 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.39 3.62 7.71 -40.82 -0.31 3.30 16 31 H 0.39 4.93 8.83 -40.82 -0.36 4.57 16 32 H 0.11 2.71 6.24 -52.49 -0.33 2.38 16 33 H 0.10 2.62 4.40 -52.48 -0.23 2.39 16 34 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 35 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 36 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -31.17 300.23 -8.34 -39.51 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.58 Total: 9.43 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -4.60 Total: -16.65 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.39 Total: -41.85 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.15 Total: 17.45 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.17 -8.34 -39.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076033697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.792 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds