Wall clock time and date at job start Mon Mar 30 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 115.56382 * 2 1 4 4 C 1.53078 * 117.51364 * 145.70464 * 2 1 3 5 5 C 1.53006 * 59.98486 * 107.47662 * 4 2 1 6 6 H 1.09002 * 117.49888 * 107.49809 * 5 4 2 7 7 N 1.46503 * 117.49664 * 252.50174 * 5 4 2 8 8 C 1.34774 * 119.99347 * 223.74600 * 7 5 4 9 9 O 1.21582 * 120.00438 * 359.97438 * 8 7 5 10 10 N 1.34784 * 119.99483 * 180.02562 * 8 7 5 11 11 C 1.39241 * 119.99738 * 184.40275 * 10 8 7 12 12 C 1.39478 * 119.83504 * 324.34318 * 11 10 8 13 13 C 1.36376 * 120.16648 * 179.75713 * 12 11 10 14 14 C 1.40868 * 119.83036 * 0.51499 * 13 12 11 15 15 C 1.41157 * 120.16786 * 179.76425 * 14 13 12 16 16 H 1.07997 * 120.00290 * 148.74725 * 15 14 13 17 17 C 1.39896 * 119.99720 * 328.74566 * 15 14 13 18 18 N 1.30879 * 120.00283 * 167.76374 * 17 15 14 19 19 Si 1.86808 * 120.00019 * 347.76475 * 17 15 14 20 20 H 1.48497 * 109.47130 * 92.59732 * 19 17 15 21 21 H 1.48500 * 109.46921 * 212.60146 * 19 17 15 22 22 H 1.48500 * 109.46848 * 332.59602 * 19 17 15 23 23 C 1.40869 * 119.66908 * 359.73565 * 14 13 12 24 24 C 1.36374 * 119.83212 * 0.02562 * 23 14 13 25 25 H 1.09004 * 109.47001 * 205.68861 * 1 2 3 26 26 H 1.09003 * 109.46820 * 325.68586 * 1 2 3 27 27 H 1.08997 * 109.47137 * 85.68407 * 1 2 3 28 28 H 1.08998 * 117.51326 * 0.02562 * 4 2 1 29 29 H 1.08998 * 117.51245 * 214.95173 * 4 2 1 30 30 H 0.96998 * 120.00169 * 43.74409 * 7 5 4 31 31 H 0.96998 * 119.99826 * 4.68027 * 10 8 7 32 32 H 1.07995 * 119.91995 * 359.97438 * 12 11 10 33 33 H 1.08004 * 120.08840 * 180.24971 * 13 12 11 34 34 H 0.97002 * 120.00196 * 179.97438 * 18 17 15 35 35 H 1.08002 * 120.08456 * 180.02562 * 23 14 13 36 36 H 1.07992 * 119.91810 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 0.7650 5 6 2.2365 -1.1210 -0.7651 6 1 3.1713 -0.8750 -1.2687 7 7 1.3960 -2.1122 -1.4415 8 6 1.8766 -2.7925 -2.5010 9 8 3.0074 -2.5833 -2.8958 10 7 1.1033 -3.7040 -3.1237 11 6 1.6290 -4.4720 -4.1593 12 6 2.5545 -3.9105 -5.0388 13 6 3.0775 -4.6580 -6.0525 14 6 2.6726 -5.9972 -6.2166 15 6 3.2056 -6.7759 -7.2664 16 1 3.3289 -7.8413 -7.1396 17 6 3.5740 -6.1675 -8.4711 18 7 4.2824 -6.8307 -9.3493 19 14 3.0550 -4.4085 -8.8261 20 1 4.1229 -3.4778 -8.3807 21 1 2.8311 -4.2434 -10.2849 22 1 1.7982 -4.1062 -8.0952 23 6 1.7335 -6.5557 -5.3274 24 6 1.2229 -5.7973 -4.3155 25 1 -0.3633 -0.9261 0.4455 26 1 -0.3633 0.8488 0.5793 27 1 -0.3633 0.0773 -1.0247 28 1 1.6124 -1.8597 1.2679 29 1 3.1725 -0.8761 1.2679 30 1 0.4938 -2.2788 -1.1268 31 1 0.1794 -3.8222 -2.8530 32 1 2.8604 -2.8823 -4.9147 33 1 3.7971 -4.2231 -6.7304 34 1 4.5375 -6.4090 -10.1848 35 1 1.4186 -7.5819 -5.4468 36 1 0.5026 -6.2239 -3.6333 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076033697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:18 Heat of formation + Delta-G solvation = -3.694053 kcal Electronic energy + Delta-G solvation = -18589.808900 eV Core-core repulsion = 15652.598132 eV Total energy + Delta-G solvation = -2937.210768 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53235 -39.71485 -38.53201 -36.14390 -34.98587 -33.88523 -31.73644 -31.14564 -29.31089 -26.70021 -23.78374 -23.57241 -22.57877 -21.79660 -21.06063 -19.71070 -19.28510 -18.43483 -17.27211 -16.72360 -16.36638 -15.92049 -15.60537 -15.51277 -15.32019 -14.49929 -14.35071 -14.10508 -13.94372 -13.80302 -13.46932 -13.20261 -12.95968 -12.67808 -12.33842 -12.13266 -12.09030 -12.00219 -11.60528 -11.34122 -11.11075 -10.93665 -10.66418 -9.70998 -9.59118 -8.91597 -8.84962 -6.42977 0.66997 0.87418 1.26403 1.36736 1.46769 1.65567 2.05670 2.12134 2.64291 2.96543 3.27269 3.50623 3.73909 3.97364 4.05651 4.23810 4.37239 4.43422 4.64230 4.73855 4.91770 4.93854 4.95758 4.97583 4.98991 5.11672 5.21144 5.34057 5.39441 5.52398 5.55864 5.69647 5.88423 5.93860 6.11728 6.24772 6.40283 6.72278 6.84817 7.10947 7.61190 8.21190 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.039547 B = 0.004245 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.846476 B = 6594.559979 C = 6893.785691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.148 4.148 3 H 0.119 0.881 4 C -0.179 4.179 5 C 0.072 3.928 6 H 0.110 0.890 7 N -0.697 5.697 8 C 0.695 3.305 9 O -0.624 6.624 10 N -0.657 5.657 11 C 0.040 3.960 12 C -0.083 4.083 13 C -0.239 4.239 14 C 0.064 3.936 15 C -0.478 4.478 16 H 0.062 0.938 17 C 0.046 3.954 18 N -0.856 5.856 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.250 1.250 23 C -0.197 4.197 24 C -0.088 4.088 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.412 0.588 31 H 0.418 0.582 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.292 0.708 35 H 0.118 0.882 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.145 12.512 17.901 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 H 0.137 0.863 4 C -0.218 4.218 5 C -0.035 4.035 6 H 0.128 0.872 7 N -0.351 5.351 8 C 0.396 3.604 9 O -0.504 6.504 10 N -0.306 5.306 11 C -0.055 4.055 12 C -0.103 4.103 13 C -0.259 4.259 14 C 0.061 3.939 15 C -0.508 4.508 16 H 0.080 0.920 17 C -0.167 4.167 18 N -0.484 5.484 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.174 1.174 23 C -0.217 4.217 24 C -0.108 4.108 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.250 0.750 31 H 0.255 0.745 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.019 12.621 17.335 23.668 hybrid contribution -0.240 0.170 -0.450 0.538 sum -10.258 12.791 16.885 23.536 Atomic orbital electron populations 1.21361 0.91480 1.03219 1.02230 1.22959 0.96789 0.94843 1.02218 0.86316 1.23690 1.03610 1.01317 0.93139 1.21522 0.96612 0.93436 0.91933 0.87183 1.44168 1.18219 1.41697 1.31049 1.16141 0.84067 0.79796 0.80418 1.90895 1.20717 1.70104 1.68698 1.41816 1.14673 1.38883 1.35196 1.17075 1.04488 0.91375 0.92540 1.20573 0.97449 0.98999 0.93322 1.20734 1.06093 0.96814 1.02215 1.17934 0.90732 0.91850 0.93376 1.19448 1.37079 0.96242 0.98055 0.91966 1.26740 0.91460 1.03082 0.95457 1.69706 1.28660 1.40833 1.09167 0.85508 0.80921 0.77909 0.76625 1.19809 1.20358 1.17377 1.20868 1.00693 1.00496 0.99625 1.20523 1.01007 0.90918 0.98339 0.91529 0.90568 0.92337 0.87475 0.87396 0.75044 0.74451 0.87455 0.89146 0.89754 0.86420 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.19 71.98 0.66 -0.60 16 2 C -0.15 -2.00 6.41 -10.77 -0.07 -2.06 16 3 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.18 -2.55 10.11 30.62 0.31 -2.24 16 5 C 0.07 1.48 6.40 45.00 0.29 1.77 16 6 H 0.11 2.91 7.40 -2.39 -0.02 2.90 16 7 N -0.70 -15.12 5.35 -457.79 -2.45 -17.56 16 8 C 0.70 22.44 8.39 179.05 1.50 23.94 16 9 O -0.62 -26.81 13.35 -3.97 -0.05 -26.86 16 10 N -0.66 -19.67 5.31 -316.78 -1.68 -21.36 16 11 C 0.04 1.57 6.30 38.56 0.24 1.82 16 12 C -0.08 -3.93 8.61 22.13 0.19 -3.74 16 13 C -0.24 -12.33 6.93 22.48 0.16 -12.18 16 14 C 0.06 3.36 5.13 -21.28 -0.11 3.25 16 15 C -0.48 -27.52 9.59 23.39 0.22 -27.29 16 16 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 17 C 0.05 2.57 5.47 85.24 0.47 3.03 16 18 N -0.86 -48.72 13.93 21.82 0.30 -48.41 16 19 Si 0.97 45.70 24.40 68.60 1.67 47.37 16 20 H -0.27 -12.74 6.67 99.48 0.66 -12.08 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.25 -11.93 6.67 99.48 0.66 -11.27 16 23 C -0.20 -8.84 9.74 22.48 0.22 -8.62 16 24 C -0.09 -3.30 9.90 22.14 0.22 -3.08 16 25 H 0.07 0.53 7.61 -2.38 -0.02 0.51 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.11 1.31 8.05 -2.39 -0.02 1.29 16 29 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.41 5.87 7.71 -92.71 -0.71 5.15 16 31 H 0.42 8.44 8.83 -92.71 -0.82 7.62 16 32 H 0.11 5.19 6.24 -2.91 -0.02 5.17 16 33 H 0.09 4.79 4.40 -2.91 -0.01 4.78 16 34 H 0.29 15.01 8.30 -92.71 -0.77 14.24 16 35 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 36 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -70.83 300.23 1.59 -69.23 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.50 Total: 23.59 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 4.30 Total: -26.01 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -3.83 Total: -87.33 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.67 Total: 47.37 kcal Total: -70.83 1.59 -69.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076033697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.540 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds