Wall clock time and date at job start Mon Mar 30 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47291 * 270.00253 * 3 2 1 5 5 H 1.48503 * 109.46964 * 30.00027 * 3 2 1 6 6 H 1.48496 * 109.46948 * 149.99886 * 3 2 1 7 7 C 1.37873 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00058 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47362 * 179.97438 * 9 7 2 11 11 N 1.40305 * 125.74045 * 90.02127 * 10 9 7 12 12 C 1.30903 * 109.10097 * 179.65205 * 11 10 9 13 13 C 1.50701 * 126.19818 * 179.97438 * 12 11 10 14 14 C 1.53005 * 117.49445 * 8.77542 * 13 12 11 15 15 C 1.53001 * 117.50002 * 300.11676 * 13 12 11 16 16 C 1.40013 * 107.60699 * 359.97438 * 12 11 10 17 17 C 1.33163 * 125.73365 * 269.71599 * 10 9 7 18 18 C 1.50589 * 129.79263 * 0.56618 * 17 10 9 19 19 C 1.53174 * 109.23231 * 159.55107 * 18 17 10 20 20 C 1.53188 * 110.67457 * 52.54412 * 19 18 17 21 21 C 1.47154 * 130.83549 * 180.21722 * 16 12 11 22 22 O 1.21312 * 122.44225 * 348.43683 * 21 16 12 23 23 H 0.97001 * 119.99846 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47321 * 59.99575 * 9 7 2 25 25 H 1.09002 * 109.46910 * 299.99969 * 9 7 2 26 26 H 1.08998 * 115.55002 * 154.43907 * 13 12 11 27 27 H 1.09002 * 117.50085 * 0.02562 * 14 13 12 28 28 H 1.09007 * 117.49481 * 145.02070 * 14 13 12 29 29 H 1.09000 * 117.49861 * 214.97637 * 15 13 12 30 30 H 1.09003 * 117.49920 * 359.97438 * 15 13 12 31 31 H 1.08992 * 109.51197 * 39.62162 * 18 17 10 32 32 H 1.08996 * 109.55152 * 279.49797 * 18 17 10 33 33 H 1.09000 * 109.23419 * 292.23728 * 19 18 17 34 34 H 1.08994 * 109.20488 * 172.83168 * 19 18 17 35 35 H 1.08994 * 109.64329 * 175.43790 * 20 19 18 36 36 H 1.09002 * 109.80573 * 54.91948 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5751 -0.0001 11 7 4.2740 -3.3474 -1.1390 12 6 4.6990 -4.5275 -0.7642 13 6 5.1021 -5.6587 -1.6747 14 6 5.2089 -5.3574 -3.1710 15 6 4.0455 -6.1991 -2.6404 16 6 4.7112 -4.5483 0.6357 17 6 4.2639 -3.3068 1.0808 18 6 4.1339 -2.9537 2.5389 19 6 4.0623 -4.2414 3.3654 20 6 5.2357 -5.1665 3.0281 21 6 5.0996 -5.6090 1.5789 22 8 5.2958 -6.7532 1.2267 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6807 0.8905 25 1 3.8752 -0.6795 -0.8895 26 1 5.8104 -6.3719 -1.2531 27 1 4.9880 -4.3409 -3.4967 28 1 5.9872 -5.8728 -3.7338 29 1 4.0589 -7.2678 -2.8544 30 1 3.0587 -5.7367 -2.6170 31 1 3.2256 -2.3713 2.6929 32 1 4.9988 -2.3685 2.8510 33 1 3.1259 -4.7555 3.1488 34 1 4.0967 -3.9895 4.4253 35 1 5.2141 -6.0388 3.6812 36 1 6.1768 -4.6328 3.1608 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082823804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:34 Heat of formation + Delta-G solvation = 27.334796 kcal Electronic energy + Delta-G solvation = -19374.293638 eV Core-core repulsion = 16438.428382 eV Total energy + Delta-G solvation = -2935.865256 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.61447 -39.69602 -38.25868 -36.35320 -35.59823 -33.72873 -30.79614 -29.91063 -28.98198 -25.61435 -24.14767 -23.54365 -23.22766 -22.25104 -20.02521 -19.47422 -19.29135 -17.91862 -16.84913 -16.59044 -16.39050 -15.86756 -15.73104 -15.45201 -15.16848 -14.91385 -14.62528 -14.22941 -14.01253 -13.61525 -13.31958 -12.96559 -12.67985 -12.54511 -12.46982 -12.34342 -12.08718 -11.93715 -11.85875 -11.76541 -11.54170 -11.31686 -10.95157 -10.42241 -10.00900 -9.46047 -8.45541 -6.58806 0.41231 1.02462 1.31580 1.35667 1.43424 1.57697 2.10742 2.22498 2.86838 2.99519 3.24868 3.51239 3.54577 3.72411 3.88659 3.97577 4.06824 4.09343 4.37098 4.39762 4.46174 4.49853 4.61047 4.69675 4.73959 4.79911 4.88393 5.01304 5.07843 5.13596 5.15392 5.21528 5.26485 5.30660 5.57541 5.82644 6.19415 6.44596 6.69042 6.79829 7.05583 8.70887 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.007083 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.169265 B = 3952.286997 C = 4988.041305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.025 3.975 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.228 1.228 7 C -0.555 4.555 8 H 0.022 0.978 9 C 0.232 3.768 10 N -0.323 5.323 11 N -0.343 5.343 12 C 0.135 3.865 13 C -0.094 4.094 14 C -0.152 4.152 15 C -0.158 4.158 16 C -0.372 4.372 17 C 0.148 3.852 18 C -0.067 4.067 19 C -0.098 4.098 20 C -0.149 4.149 21 C 0.432 3.568 22 O -0.507 6.507 23 H 0.275 0.725 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.132 0.868 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.052 0.948 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.888 -5.563 6.123 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.175 4.175 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.151 1.151 7 C -0.593 4.593 8 H 0.041 0.959 9 C 0.112 3.888 10 N -0.096 5.096 11 N -0.165 5.165 12 C -0.029 4.029 13 C -0.114 4.114 14 C -0.189 4.189 15 C -0.196 4.196 16 C -0.385 4.385 17 C 0.009 3.991 18 C -0.105 4.105 19 C -0.136 4.136 20 C -0.186 4.186 21 C 0.314 3.686 22 O -0.386 6.386 23 H 0.084 0.916 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.102 0.898 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.479 -5.091 4.925 14.349 hybrid contribution -0.564 0.407 0.039 0.697 sum 11.915 -4.684 4.964 13.731 Atomic orbital electron populations 1.70025 1.08504 1.29094 1.49570 1.25819 0.95662 1.03290 0.92752 0.85696 0.80077 0.77502 0.79650 1.19425 1.19758 1.15109 1.21138 0.89964 0.93674 1.54540 0.95916 1.20000 0.94008 0.74444 1.00311 1.48510 1.44827 1.13029 1.03224 1.77332 1.25282 1.05079 1.08758 1.21628 0.95092 0.92911 0.93252 1.20419 1.04580 0.96324 0.90107 1.23047 1.01122 1.01213 0.93492 1.23008 0.93715 1.01188 1.01721 1.20973 1.25004 0.98620 0.93870 1.22668 0.92947 0.90414 0.93064 1.20674 1.05410 1.00538 0.83923 1.21485 0.97487 0.92863 1.01796 1.22339 1.01869 1.02406 0.92001 1.22398 0.69706 0.85112 0.91427 1.90443 1.42862 1.22036 1.83291 0.91577 0.89876 0.93150 0.85015 0.89848 0.85123 0.85437 0.91136 0.89368 0.85612 0.92874 0.85599 0.87192 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.96 21.45 0.30 -55.19 16 2 C 0.03 1.37 5.47 84.65 0.46 1.83 16 3 Si 0.95 39.05 27.47 68.60 1.88 40.94 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.23 -8.03 6.54 99.48 0.65 -7.38 16 7 C -0.56 -30.78 9.94 25.60 0.25 -30.53 16 8 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 9 C 0.23 10.46 5.11 85.64 0.44 10.90 16 10 N -0.32 -14.31 3.54 -336.57 -1.19 -15.51 16 11 N -0.34 -15.75 12.13 -47.26 -0.57 -16.32 16 12 C 0.14 5.55 6.78 43.13 0.29 5.85 16 13 C -0.09 -3.19 5.92 -11.54 -0.07 -3.26 16 14 C -0.15 -4.34 10.15 30.62 0.31 -4.03 16 15 C -0.16 -4.80 10.24 30.62 0.31 -4.49 16 16 C -0.37 -14.10 6.08 -20.26 -0.12 -14.22 16 17 C 0.15 5.50 6.84 42.57 0.29 5.79 16 18 C -0.07 -1.74 5.87 29.87 0.18 -1.57 16 19 C -0.10 -1.98 5.81 30.72 0.18 -1.81 16 20 C -0.15 -3.04 6.15 30.37 0.19 -2.85 16 21 C 0.43 13.93 7.09 28.49 0.20 14.13 16 22 O -0.51 -18.72 17.04 -3.13 -0.05 -18.77 16 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 24 H 0.08 3.22 7.00 -2.39 -0.02 3.20 16 25 H 0.05 2.26 7.57 -2.39 -0.02 2.25 16 26 H 0.13 4.20 7.55 -2.39 -0.02 4.18 16 27 H 0.08 2.73 7.91 -2.39 -0.02 2.71 16 28 H 0.13 2.78 8.14 -2.38 -0.02 2.76 16 29 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -73.59 306.00 4.30 -69.28 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 1.02 Total: 19.84 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 2.91 Total: -24.26 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -1.47 Total: -87.02 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.88 Total: 40.94 kcal Total: -73.59 4.30 -69.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082823804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.618 kcal (2) G-P(sol) polarization free energy of solvation -73.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds