Wall clock time and date at job start Mon Mar 30 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47568 * 2 1 4 4 H 1.09001 * 109.46897 * 61.35023 * 3 2 1 5 5 C 1.50693 * 109.47619 * 181.35086 * 3 2 1 6 6 H 1.07997 * 119.99855 * 119.99743 * 5 3 2 7 7 C 1.37884 * 120.00077 * 300.00362 * 5 3 2 8 8 N 1.31512 * 120.00058 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 119.99722 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47191 * 90.00335 * 9 7 5 11 11 H 1.48504 * 109.46864 * 210.00256 * 9 7 5 12 12 H 1.48500 * 109.47053 * 329.99869 * 9 7 5 13 13 S 1.81396 * 109.46887 * 301.35426 * 3 2 1 14 14 O 1.42104 * 108.58040 * 331.04641 * 13 3 2 15 15 O 1.42104 * 108.57666 * 200.02172 * 13 3 2 16 16 C 1.81400 * 101.92402 * 85.53488 * 13 3 2 17 17 C 1.52998 * 109.47017 * 78.12759 * 16 13 3 18 18 C 1.53004 * 109.46754 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.47058 * 299.99666 * 18 17 16 20 20 C 1.52990 * 109.46999 * 60.00346 * 19 18 17 21 21 C 1.53002 * 109.47302 * 299.99759 * 20 19 18 22 22 H 1.09002 * 109.46805 * 172.32843 * 1 2 3 23 23 H 1.09005 * 109.46626 * 292.32819 * 1 2 3 24 24 H 1.09002 * 109.46787 * 52.32783 * 1 2 3 25 25 H 1.09002 * 109.47236 * 239.99836 * 2 1 3 26 26 H 1.08999 * 109.47649 * 120.00089 * 2 1 3 27 27 H 0.97001 * 119.99631 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.47198 * 318.12342 * 16 13 3 29 29 H 1.09003 * 109.47045 * 299.99619 * 17 16 13 30 30 H 1.08992 * 109.47445 * 60.00305 * 17 16 13 31 31 H 1.09000 * 109.46880 * 179.97438 * 18 17 16 32 32 H 1.08997 * 109.47625 * 59.99949 * 18 17 16 33 33 H 1.09003 * 109.46772 * 300.00340 * 19 18 17 34 34 H 1.08996 * 109.46945 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47577 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.47712 * 60.00017 * 20 19 18 37 37 H 1.08997 * 109.47417 * 300.00120 * 21 20 19 38 38 H 1.09000 * 109.47249 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6967 1.9493 0.9019 5 6 3.5467 1.4426 -0.0335 6 1 4.0685 1.9167 -0.8516 7 6 4.2589 0.8375 0.9803 8 7 5.5737 0.8372 0.9508 9 14 3.3561 0.0181 2.3956 10 1 3.1008 -1.4062 2.0615 11 1 4.1864 0.0971 3.6243 12 1 2.0636 0.7119 2.6262 13 16 1.4027 2.3092 -1.4605 14 8 1.2054 1.3604 -2.4998 15 8 2.2197 3.4459 -1.7047 16 6 -0.2196 2.8772 -0.8809 17 6 -0.0412 4.1125 0.0040 18 6 -1.4095 4.5912 0.4934 19 6 -2.2852 4.9478 -0.7095 20 6 -2.4636 3.7126 -1.5944 21 6 -1.0953 3.2338 -2.0838 22 1 -0.3633 -1.0185 -0.1372 23 1 -0.3633 0.3905 0.9507 24 1 -0.3633 0.6281 -0.8134 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 6.0746 0.4117 1.6642 28 1 -0.6981 2.0844 -0.3059 29 1 0.5823 3.8583 0.8613 30 1 0.4372 4.9053 -0.5709 31 1 -1.2824 5.4710 1.1242 32 1 -1.8876 3.7983 1.0685 33 1 -1.8071 5.7408 -1.2846 34 1 -3.2599 5.2892 -0.3609 35 1 -3.0879 3.9664 -2.4511 36 1 -2.9417 2.9195 -1.0194 37 1 -0.6173 4.0267 -2.6589 38 1 -1.2225 2.3540 -2.7146 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084253464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:11 Heat of formation + Delta-G solvation = -116.814240 kcal Electronic energy + Delta-G solvation = -19243.989536 eV Core-core repulsion = 16405.024708 eV Total energy + Delta-G solvation = -2838.964827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.34805 -38.03023 -36.95347 -36.80231 -34.22486 -32.05040 -31.72987 -29.96509 -25.12087 -24.34107 -23.61074 -22.83694 -20.73580 -19.62899 -19.18854 -17.90321 -17.54521 -16.73077 -16.31950 -15.92427 -15.31515 -15.14352 -15.08108 -14.52308 -14.35040 -14.22384 -13.94577 -13.57367 -13.35846 -13.18921 -12.96498 -12.85339 -12.73831 -12.68622 -12.37517 -12.07198 -11.91724 -11.81622 -11.65717 -11.56119 -11.34861 -11.14631 -11.03992 -10.83903 -10.48421 -8.42386 -6.57358 -0.74509 1.27909 1.33158 1.45582 2.11178 2.25689 2.82114 2.91364 3.14831 3.53398 3.64519 3.94657 4.03557 4.11705 4.20743 4.23705 4.30392 4.40692 4.41190 4.50788 4.57534 4.64880 4.78026 4.88879 5.00100 5.01412 5.04464 5.13609 5.22442 5.27377 5.29006 5.32870 5.35620 5.44929 5.55533 5.89645 6.48665 7.10536 8.73493 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.027169 B = 0.007852 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.346895 B = 3565.120142 C = 3703.771162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 C -0.435 4.435 4 H 0.116 0.884 5 C -0.538 4.538 6 H 0.035 0.965 7 C 0.025 3.975 8 N -0.938 5.938 9 Si 0.950 3.050 10 H -0.259 1.259 11 H -0.293 1.293 12 H -0.219 1.219 13 S 2.393 3.607 14 O -0.984 6.984 15 O -0.994 6.994 16 C -0.557 4.557 17 C -0.116 4.116 18 C -0.108 4.108 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.114 4.114 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.274 0.726 28 H 0.175 0.825 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.153 3.612 2.285 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.160 4.160 3 C -0.547 4.547 4 H 0.134 0.866 5 C -0.576 4.576 6 H 0.053 0.947 7 C -0.176 4.176 8 N -0.576 5.576 9 Si 0.774 3.226 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.142 1.142 13 S 2.585 3.415 14 O -0.981 6.981 15 O -0.992 6.992 16 C -0.669 4.669 17 C -0.154 4.154 18 C -0.146 4.146 19 C -0.162 4.162 20 C -0.144 4.144 21 C -0.153 4.153 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.192 0.808 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.539 3.689 1.465 20.919 hybrid contribution 0.874 -0.489 0.843 1.309 sum -19.665 3.200 2.308 20.057 Atomic orbital electron populations 1.22456 0.93285 1.05071 1.03265 1.21687 0.97148 0.94523 1.02664 1.27891 1.04246 1.06163 1.16422 0.86624 1.20404 0.88158 1.38860 1.10211 0.94714 1.25994 0.95397 0.95298 1.00865 1.70034 1.07998 1.44523 1.35011 0.85796 0.80137 0.79925 0.76768 1.18435 1.22058 1.14174 1.08626 0.78685 0.75245 0.78953 1.93413 1.86655 1.63138 1.54905 1.93412 1.68184 1.52185 1.85370 1.30403 1.17421 1.10217 1.08874 1.21512 1.00853 0.94484 0.98580 1.21513 0.92887 1.02139 0.98109 1.21627 1.00590 0.97572 0.96449 1.21494 0.93858 0.98618 1.00435 1.21514 0.97403 1.02399 0.93958 0.89265 0.89045 0.91855 0.92032 0.91823 0.91719 0.80768 0.90386 0.91410 0.90267 0.89946 0.92450 0.89549 0.89892 0.89917 0.91944 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.89 8.50 71.98 0.61 -4.28 16 2 C -0.12 -4.74 4.58 30.59 0.14 -4.60 16 3 C -0.43 -19.30 1.82 29.85 0.05 -19.24 16 4 H 0.12 4.42 6.44 -2.39 -0.02 4.40 16 5 C -0.54 -31.50 8.94 25.60 0.23 -31.27 16 6 H 0.03 2.35 7.59 -2.91 -0.02 2.33 16 7 C 0.02 1.43 5.45 84.66 0.46 1.90 16 8 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 9 Si 0.95 41.73 24.36 68.60 1.67 43.40 16 10 H -0.26 -10.71 6.88 99.48 0.68 -10.03 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.22 -8.04 6.53 99.48 0.65 -7.40 16 13 S 2.39 100.58 3.76 -56.49 -0.21 100.37 16 14 O -0.98 -44.99 16.05 -127.37 -2.04 -47.03 16 15 O -0.99 -50.67 16.60 -127.37 -2.11 -52.79 16 16 C -0.56 -15.08 1.77 30.60 0.05 -15.03 16 17 C -0.12 -2.92 4.93 30.59 0.15 -2.77 16 18 C -0.11 -1.85 5.92 30.60 0.18 -1.67 16 19 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 20 C -0.11 -1.69 5.92 30.59 0.18 -1.50 16 21 C -0.11 -2.70 5.07 30.60 0.16 -2.54 16 22 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.09 1.85 7.99 -2.38 -0.02 1.83 16 24 H 0.06 1.59 4.10 -2.39 -0.01 1.58 16 25 H 0.06 2.63 7.84 -2.39 -0.02 2.61 16 26 H 0.06 2.48 3.30 -2.39 -0.01 2.47 16 27 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.18 3.64 4.89 -2.39 -0.01 3.62 16 29 H 0.08 1.96 7.43 -2.39 -0.02 1.94 16 30 H 0.07 1.92 7.80 -2.39 -0.02 1.91 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.95 7.92 -2.39 -0.02 1.93 16 Total: -1.00 -78.46 292.83 0.95 -77.50 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.96 Total: 19.91 kcal Atomic # 6 Polarization: -85.15 SS G_CDS: 2.40 Total: -82.75 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.61 kcal Atomic # 8 Polarization: -95.66 SS G_CDS: -4.16 Total: -99.82 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.67 Total: 43.40 kcal Atomic # 16 Polarization: 100.58 SS G_CDS: -0.21 Total: 100.37 kcal Total: -78.46 0.95 -77.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084253464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.314 kcal (2) G-P(sol) polarization free energy of solvation -78.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds