Wall clock time and date at job start Mon Mar 30 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 H 1.09000 * 109.47230 * 306.79272 * 3 2 1 5 5 C 1.50706 * 109.46975 * 186.79044 * 3 2 1 6 6 H 1.07995 * 119.99701 * 245.69381 * 5 3 2 7 7 C 1.37869 * 119.99724 * 65.69827 * 5 3 2 8 8 N 1.31515 * 120.00700 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99969 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46828 * 89.99835 * 9 7 5 11 11 H 1.48501 * 109.47508 * 210.00046 * 9 7 5 12 12 H 1.48498 * 109.47032 * 330.00119 * 9 7 5 13 13 S 1.81396 * 109.46769 * 66.79201 * 3 2 1 14 14 O 1.42099 * 108.58215 * 74.90041 * 13 3 2 15 15 O 1.42099 * 108.58230 * 303.87175 * 13 3 2 16 16 C 1.81405 * 101.91971 * 189.38584 * 13 3 2 17 17 C 1.53002 * 109.47242 * 171.22076 * 16 13 3 18 18 C 1.52994 * 109.47295 * 180.02562 * 17 16 13 19 19 C 1.53008 * 109.47045 * 299.99772 * 18 17 16 20 20 C 1.53002 * 109.46888 * 59.99978 * 19 18 17 21 21 C 1.52999 * 109.47015 * 291.21955 * 16 13 3 22 22 H 1.09002 * 109.46854 * 171.66692 * 1 2 3 23 23 H 1.08997 * 109.46656 * 291.65900 * 1 2 3 24 24 H 1.08993 * 109.47493 * 51.66462 * 1 2 3 25 25 H 1.08997 * 109.47131 * 240.00414 * 2 1 3 26 26 H 1.08998 * 109.47362 * 120.00162 * 2 1 3 27 27 H 0.97000 * 120.00839 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47153 * 51.21881 * 16 13 3 29 29 H 1.09004 * 109.47091 * 59.99727 * 17 16 13 30 30 H 1.09005 * 109.47000 * 300.00378 * 17 16 13 31 31 H 1.08995 * 109.47239 * 59.99720 * 18 17 16 32 32 H 1.09002 * 109.47135 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47174 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.47027 * 300.00218 * 19 18 17 35 35 H 1.08998 * 109.47070 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.47206 * 60.00168 * 20 19 18 37 37 H 1.09006 * 109.47522 * 299.99863 * 21 16 13 38 38 H 1.09002 * 109.47104 * 60.00126 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5808 1.9903 -0.8230 5 6 3.5376 1.4459 -0.1680 6 1 4.1701 1.7982 0.6334 7 6 4.1002 0.9993 -1.3448 8 7 3.3301 0.5699 -2.3206 9 14 5.9566 1.0041 -1.5534 10 1 6.5104 -0.2923 -1.0865 11 1 6.2933 1.1988 -2.9865 12 1 6.5418 2.1094 -0.7528 13 16 1.6061 2.2372 1.5719 14 8 2.4709 1.7406 2.5842 15 8 0.1998 2.1437 1.7535 16 6 2.0328 3.9700 1.2461 17 6 1.5294 4.8442 2.3965 18 6 1.8887 6.3057 2.1214 19 6 3.4080 6.4438 2.0029 20 6 3.9113 5.5696 0.8525 21 6 3.5520 4.1076 1.1279 22 1 -0.3633 -1.0169 -0.1489 23 1 -0.3632 0.3793 0.9551 24 1 -0.3634 0.6374 -0.8060 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.7259 0.2560 -3.1487 28 1 1.5655 4.2903 0.3149 29 1 1.9968 4.5237 3.3277 30 1 0.4471 4.7461 2.4807 31 1 1.4211 6.6257 1.1904 32 1 1.5298 6.9285 2.9408 33 1 3.6640 7.4851 1.8074 34 1 3.8756 6.1236 2.9340 35 1 4.9936 5.6676 0.7683 36 1 3.4436 5.8897 -0.0786 37 1 4.0194 3.7872 2.0591 38 1 3.9105 3.4848 0.3083 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084253468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:13 Heat of formation + Delta-G solvation = -105.716359 kcal Electronic energy + Delta-G solvation = -19229.047824 eV Core-core repulsion = 16390.564237 eV Total energy + Delta-G solvation = -2838.483587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.01648 -36.01176 -35.16409 -34.79888 -31.82828 -30.77286 -30.51017 -27.68946 -23.65054 -22.67562 -22.38168 -20.70055 -19.54812 -17.88005 -16.93440 -16.25758 -15.64518 -14.91616 -14.45330 -14.27157 -13.92208 -13.81646 -13.29012 -12.99906 -12.61138 -12.24742 -12.14553 -11.97655 -11.74867 -11.35982 -11.25239 -11.05996 -11.04563 -10.93387 -10.84923 -10.75517 -10.56170 -10.27669 -10.19842 -10.03569 -9.78694 -9.49580 -9.35656 -8.69429 -8.51367 -6.31575 -4.42744 1.13853 3.17396 3.24959 3.27472 3.84745 4.20056 4.50379 4.77834 4.91782 5.02456 5.10630 5.15268 5.41823 5.59445 5.61958 5.74820 5.81061 5.85437 5.97108 6.02770 6.17063 6.19636 6.25001 6.31311 6.34220 6.37643 6.45978 6.66986 6.70237 6.75553 6.92182 6.97123 7.19280 7.49487 7.53069 7.86382 8.58449 9.22595 10.75775 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.010570 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.131794 B = 2648.246674 C = 3825.842339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.104 4.104 3 C -0.365 4.365 4 H 0.093 0.907 5 C -0.528 4.528 6 H 0.085 0.915 7 C 0.080 3.920 8 N -0.872 5.872 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.266 1.266 13 S 2.380 3.620 14 O -0.957 6.957 15 O -0.975 6.975 16 C -0.561 4.561 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.124 4.124 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.267 0.733 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 8.096 3.620 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.144 4.144 3 C -0.481 4.481 4 H 0.111 0.889 5 C -0.566 4.566 6 H 0.103 0.897 7 C -0.127 4.127 8 N -0.507 5.507 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.190 1.190 13 S 2.570 3.430 14 O -0.954 6.954 15 O -0.972 6.972 16 C -0.669 4.669 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.161 4.161 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.123 0.877 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.310 7.682 4.265 8.884 hybrid contribution 1.123 0.339 -0.977 1.527 sum -0.187 8.022 3.288 8.671 Atomic orbital electron populations 1.22306 0.97608 1.00802 1.03068 1.21368 0.92913 0.96237 1.03890 1.27318 1.05470 1.03425 1.11849 0.88914 1.20652 0.87525 1.46353 1.02041 0.89698 1.24896 0.98564 0.93880 0.95321 1.69911 1.35353 1.40298 1.05182 0.86529 0.84535 0.79267 0.77571 1.20113 1.20946 1.19046 1.09325 0.74674 0.77971 0.81032 1.93441 1.67750 1.77342 1.56878 1.93417 1.31064 1.85442 1.87238 1.30008 1.06204 1.23801 1.06895 1.21344 1.00977 0.95715 0.96470 1.21429 0.96425 0.95400 1.01455 1.21582 0.95686 0.99243 0.99421 1.21485 1.00311 0.95193 0.98035 1.21888 0.90370 0.98234 1.05610 0.93740 0.91044 0.92886 0.87690 0.93406 0.92334 0.85622 0.91217 0.90883 0.91849 0.92141 0.92497 0.92088 0.91990 0.92007 0.91045 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.68 9.34 37.16 0.35 -3.33 16 2 C -0.10 -2.38 5.27 -26.73 -0.14 -2.52 16 3 C -0.36 -8.31 1.98 -27.88 -0.06 -8.37 16 4 H 0.09 2.11 8.10 -51.92 -0.42 1.69 16 5 C -0.53 -12.78 6.03 -34.44 -0.21 -12.99 16 6 H 0.09 2.01 5.76 -52.49 -0.30 1.71 16 7 C 0.08 1.98 5.29 -17.82 -0.09 1.88 16 8 N -0.87 -22.50 11.74 55.43 0.65 -21.85 16 9 Si 0.89 19.40 29.54 -169.99 -5.02 14.38 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 S 2.38 50.01 3.95 -107.50 -0.42 49.58 16 14 O -0.96 -22.70 17.04 -57.83 -0.99 -23.69 16 15 O -0.97 -21.54 15.03 -57.83 -0.87 -22.41 16 16 C -0.56 -9.71 2.52 -26.73 -0.07 -9.78 16 17 C -0.11 -1.63 5.16 -26.73 -0.14 -1.77 16 18 C -0.11 -1.39 5.92 -26.73 -0.16 -1.54 16 19 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 20 C -0.11 -1.60 5.92 -26.70 -0.16 -1.76 16 21 C -0.12 -2.14 4.16 -26.70 -0.11 -2.25 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 1.48 5.59 -51.93 -0.29 1.19 16 24 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 25 H 0.10 2.58 6.41 -51.93 -0.33 2.25 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.13 1.99 8.14 -51.93 -0.42 1.56 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.26 7.89 -51.93 -0.41 0.85 16 38 H 0.12 2.33 4.68 -51.93 -0.24 2.09 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -28.38 300.53 -9.27 -37.65 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.20 Total: 5.93 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: -0.94 Total: -44.12 kcal Atomic # 7 Polarization: -22.50 SS G_CDS: 0.65 Total: -21.85 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.85 Total: -46.10 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 16 Polarization: 50.01 SS G_CDS: -0.42 Total: 49.58 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.38 -9.27 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084253468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.067 kcal (2) G-P(sol) polarization free energy of solvation -28.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds