Wall clock time and date at job start Mon Mar 30 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 H 1.09000 * 109.47230 * 306.79272 * 3 2 1 5 5 C 1.50706 * 109.46975 * 186.79044 * 3 2 1 6 6 H 1.07995 * 119.99701 * 245.69381 * 5 3 2 7 7 C 1.37869 * 119.99724 * 65.69827 * 5 3 2 8 8 N 1.31515 * 120.00700 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99969 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46828 * 89.99835 * 9 7 5 11 11 H 1.48501 * 109.47508 * 210.00046 * 9 7 5 12 12 H 1.48498 * 109.47032 * 330.00119 * 9 7 5 13 13 S 1.81396 * 109.46769 * 66.79201 * 3 2 1 14 14 O 1.42099 * 108.58215 * 74.90041 * 13 3 2 15 15 O 1.42099 * 108.58230 * 303.87175 * 13 3 2 16 16 C 1.81405 * 101.91971 * 189.38584 * 13 3 2 17 17 C 1.53002 * 109.47242 * 171.22076 * 16 13 3 18 18 C 1.52994 * 109.47295 * 180.02562 * 17 16 13 19 19 C 1.53008 * 109.47045 * 299.99772 * 18 17 16 20 20 C 1.53002 * 109.46888 * 59.99978 * 19 18 17 21 21 C 1.52999 * 109.47015 * 291.21955 * 16 13 3 22 22 H 1.09002 * 109.46854 * 171.66692 * 1 2 3 23 23 H 1.08997 * 109.46656 * 291.65900 * 1 2 3 24 24 H 1.08993 * 109.47493 * 51.66462 * 1 2 3 25 25 H 1.08997 * 109.47131 * 240.00414 * 2 1 3 26 26 H 1.08998 * 109.47362 * 120.00162 * 2 1 3 27 27 H 0.97000 * 120.00839 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47153 * 51.21881 * 16 13 3 29 29 H 1.09004 * 109.47091 * 59.99727 * 17 16 13 30 30 H 1.09005 * 109.47000 * 300.00378 * 17 16 13 31 31 H 1.08995 * 109.47239 * 59.99720 * 18 17 16 32 32 H 1.09002 * 109.47135 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47174 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.47027 * 300.00218 * 19 18 17 35 35 H 1.08998 * 109.47070 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.47206 * 60.00168 * 20 19 18 37 37 H 1.09006 * 109.47522 * 299.99863 * 21 16 13 38 38 H 1.09002 * 109.47104 * 60.00126 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5808 1.9903 -0.8230 5 6 3.5376 1.4459 -0.1680 6 1 4.1701 1.7982 0.6334 7 6 4.1002 0.9993 -1.3448 8 7 3.3301 0.5699 -2.3206 9 14 5.9566 1.0041 -1.5534 10 1 6.5104 -0.2923 -1.0865 11 1 6.2933 1.1988 -2.9865 12 1 6.5418 2.1094 -0.7528 13 16 1.6061 2.2372 1.5719 14 8 2.4709 1.7406 2.5842 15 8 0.1998 2.1437 1.7535 16 6 2.0328 3.9700 1.2461 17 6 1.5294 4.8442 2.3965 18 6 1.8887 6.3057 2.1214 19 6 3.4080 6.4438 2.0029 20 6 3.9113 5.5696 0.8525 21 6 3.5520 4.1076 1.1279 22 1 -0.3633 -1.0169 -0.1489 23 1 -0.3632 0.3793 0.9551 24 1 -0.3634 0.6374 -0.8060 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.7259 0.2560 -3.1487 28 1 1.5655 4.2903 0.3149 29 1 1.9968 4.5237 3.3277 30 1 0.4471 4.7461 2.4807 31 1 1.4211 6.6257 1.1904 32 1 1.5298 6.9285 2.9408 33 1 3.6640 7.4851 1.8074 34 1 3.8756 6.1236 2.9340 35 1 4.9936 5.6676 0.7683 36 1 3.4436 5.8897 -0.0786 37 1 4.0194 3.7872 2.0591 38 1 3.9105 3.4848 0.3083 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084253468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:13 Heat of formation + Delta-G solvation = -122.404674 kcal Electronic energy + Delta-G solvation = -19229.771484 eV Core-core repulsion = 16390.564237 eV Total energy + Delta-G solvation = -2839.207247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.21858 -37.76475 -36.95045 -36.59897 -33.66740 -32.01828 -31.69893 -29.44884 -25.46229 -23.97300 -23.59436 -22.39242 -20.74947 -19.58092 -18.73549 -17.92026 -17.26327 -16.57334 -16.14064 -15.65913 -15.13958 -15.04182 -14.77645 -14.72911 -14.14929 -13.86953 -13.59658 -13.44918 -13.33041 -12.99446 -12.81730 -12.76028 -12.65686 -12.53990 -12.27409 -12.10191 -12.03735 -11.89977 -11.71382 -11.36849 -11.31923 -11.05028 -10.93669 -10.50174 -10.20876 -8.20787 -6.35609 -0.53385 1.43563 1.47406 1.55445 2.18163 2.39659 2.88483 3.11393 3.31801 3.66799 3.79968 4.02233 4.24337 4.29282 4.34080 4.41293 4.46951 4.53130 4.55726 4.63030 4.73470 4.89846 4.95301 5.04317 5.04850 5.17521 5.25358 5.26077 5.30570 5.35360 5.39870 5.52913 5.57310 5.63160 5.64182 6.00364 6.69766 7.31309 8.86798 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.010570 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.131794 B = 2648.246674 C = 3825.842339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.108 4.108 3 C -0.380 4.380 4 H 0.089 0.911 5 C -0.532 4.532 6 H 0.085 0.915 7 C 0.038 3.962 8 N -0.900 5.900 9 Si 0.944 3.056 10 H -0.281 1.281 11 H -0.281 1.281 12 H -0.254 1.254 13 S 2.385 3.615 14 O -0.989 6.989 15 O -0.988 6.988 16 C -0.539 4.539 17 C -0.115 4.115 18 C -0.106 4.106 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.128 4.128 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.266 0.734 28 H 0.144 0.856 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 10.396 3.972 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.148 4.148 3 C -0.495 4.495 4 H 0.106 0.894 5 C -0.570 4.570 6 H 0.102 0.898 7 C -0.166 4.166 8 N -0.537 5.537 9 Si 0.768 3.232 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.177 1.177 13 S 2.579 3.421 14 O -0.987 6.987 15 O -0.985 6.985 16 C -0.651 4.651 17 C -0.153 4.153 18 C -0.144 4.144 19 C -0.159 4.159 20 C -0.149 4.149 21 C -0.166 4.166 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.162 0.838 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.104 9.927 4.618 11.004 hybrid contribution 1.034 -0.338 -1.052 1.513 sum -0.070 9.590 3.566 10.231 Atomic orbital electron populations 1.22245 0.95699 1.02318 1.02977 1.21324 0.94689 0.96373 1.02383 1.27403 1.04852 1.03764 1.13440 0.89357 1.20872 0.88448 1.45734 1.01904 0.89753 1.25544 1.01963 0.93789 0.95256 1.70005 1.36697 1.41404 1.05561 0.85757 0.80529 0.79211 0.77682 1.20694 1.20600 1.17712 1.08850 0.73969 0.79771 0.79547 1.93396 1.68378 1.79374 1.57517 1.93392 1.31532 1.86574 1.87008 1.29783 1.06755 1.19641 1.08941 1.21516 1.01352 0.97261 0.95192 1.21471 0.96633 0.93328 1.02995 1.21610 0.95510 1.00266 0.98519 1.21509 1.01192 0.92979 0.99263 1.21879 0.89929 1.00455 1.04354 0.91610 0.91394 0.92485 0.89847 0.94282 0.92424 0.83756 0.91510 0.90263 0.90844 0.89696 0.89915 0.92159 0.91045 0.91265 0.91919 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.15 9.34 71.98 0.67 -6.47 16 2 C -0.11 -5.07 5.27 30.60 0.16 -4.90 16 3 C -0.38 -17.62 1.98 29.85 0.06 -17.56 16 4 H 0.09 4.10 8.10 -2.39 -0.02 4.08 16 5 C -0.53 -26.12 6.03 25.60 0.15 -25.97 16 6 H 0.08 4.07 5.76 -2.91 -0.02 4.05 16 7 C 0.04 1.89 5.29 84.65 0.45 2.34 16 8 N -0.90 -47.25 11.74 21.44 0.25 -47.00 16 9 Si 0.94 39.75 29.54 68.60 2.03 41.78 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 13 S 2.38 100.32 3.95 -56.49 -0.22 100.09 16 14 O -0.99 -47.56 17.04 -127.37 -2.17 -49.73 16 15 O -0.99 -43.39 15.03 -127.37 -1.91 -45.30 16 16 C -0.54 -17.81 2.52 30.59 0.08 -17.74 16 17 C -0.11 -3.22 5.16 30.59 0.16 -3.06 16 18 C -0.11 -2.27 5.92 30.60 0.18 -2.08 16 19 C -0.12 -2.59 5.92 30.60 0.18 -2.41 16 20 C -0.11 -2.85 5.92 30.61 0.18 -2.67 16 21 C -0.13 -4.26 4.16 30.61 0.13 -4.13 16 22 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.07 2.82 5.59 -2.39 -0.01 2.81 16 24 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 25 H 0.08 4.24 6.41 -2.39 -0.02 4.22 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 28 H 0.14 4.26 8.14 -2.39 -0.02 4.24 16 29 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.08 2.13 8.12 -2.38 -0.02 2.11 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.17 7.89 -2.38 -0.02 2.15 16 38 H 0.10 3.83 4.68 -2.39 -0.01 3.82 16 Total: -1.00 -60.57 300.53 1.39 -59.17 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 1.02 Total: 25.65 kcal Atomic # 6 Polarization: -87.07 SS G_CDS: 2.40 Total: -84.66 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.25 Total: -47.00 kcal Atomic # 8 Polarization: -90.95 SS G_CDS: -4.08 Total: -95.03 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Atomic # 16 Polarization: 100.32 SS G_CDS: -0.22 Total: 100.09 kcal Total: -60.57 1.39 -59.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084253468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.231 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds