Wall clock time and date at job start Mon Mar 30 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 9 9 S 1.81409 * 109.46599 * 179.97438 * 7 6 5 10 10 O 1.42098 * 108.57233 * 174.48710 * 9 7 6 11 11 O 1.42097 * 108.57465 * 305.51246 * 9 7 6 12 12 C 1.81403 * 101.91895 * 60.00048 * 9 7 6 13 13 C 1.53003 * 109.46362 * 179.97438 * 12 9 7 14 14 C 1.50704 * 109.46624 * 179.97438 * 13 12 9 15 15 H 1.08001 * 120.00236 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99943 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00056 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00091 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47087 * 60.00293 * 18 16 14 20 20 H 1.48497 * 109.47232 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46920 * 300.00535 * 18 16 14 22 22 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 29 29 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 30 30 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 32 32 H 1.08996 * 109.47213 * 299.99287 * 12 9 7 33 33 H 1.08994 * 109.47003 * 60.00392 * 12 9 7 34 34 H 1.08997 * 109.47448 * 299.99323 * 13 12 9 35 35 H 1.08991 * 109.47361 * 60.00126 * 13 12 9 36 36 H 0.96997 * 119.99599 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47103 * 300.00247 * 22 2 1 38 38 H 1.09001 * 109.47066 * 60.00169 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 1 3.9335 0.3075 1.2487 9 16 4.1753 -1.5755 2.7299 10 8 3.7998 -0.8204 3.8736 11 8 3.7999 -2.9435 2.6477 12 6 5.9736 -1.4562 2.5234 13 6 6.6687 -2.1373 3.7041 14 6 8.1626 -2.0387 3.5323 15 1 8.5751 -1.5399 2.6677 16 6 9.0030 -2.5845 4.4794 17 7 8.5008 -3.1915 5.5325 18 14 10.8548 -2.4618 4.2668 19 1 11.2534 -1.0323 4.2147 20 1 11.5295 -3.1228 5.4126 21 1 11.2536 -3.1332 3.0036 22 6 2.0400 -0.7212 1.2491 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.6767 -1.7489 -1.2494 27 1 1.6767 -0.2073 -2.1392 28 1 3.9330 0.3072 -1.2498 29 1 3.9333 -1.2348 -2.1395 30 1 5.1706 -1.4408 -0.0005 31 1 3.7176 -2.4693 -0.0002 32 1 6.2663 -1.9484 1.5960 33 1 6.2662 -0.4070 2.4860 34 1 6.3761 -1.6447 4.6314 35 1 6.3761 -3.1865 3.7420 36 1 9.0920 -3.5758 6.1985 37 1 1.6767 -0.2074 2.1392 38 1 1.6768 -1.7489 1.2491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084254262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:02 Heat of formation + Delta-G solvation = -136.024747 kcal Electronic energy + Delta-G solvation = -18166.778315 eV Core-core repulsion = 15326.980458 eV Total energy + Delta-G solvation = -2839.797857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.69306 -37.97321 -37.01730 -35.88941 -33.78680 -33.04444 -31.98287 -27.85966 -27.13332 -24.42694 -23.10359 -22.53949 -20.78237 -19.73287 -18.81409 -17.56496 -16.98669 -16.86761 -16.47657 -16.09171 -15.58822 -15.23269 -15.07635 -14.50050 -14.34821 -14.07439 -13.72122 -13.35454 -13.13078 -13.02871 -12.94158 -12.83489 -12.77768 -12.58734 -12.44762 -12.23444 -12.11300 -12.07415 -11.85494 -11.70463 -11.38468 -11.24269 -11.03268 -10.63755 -10.58117 -8.25248 -6.40243 -0.91205 1.40640 1.44899 1.53019 1.91899 2.38267 2.72479 3.04609 3.08007 3.46413 3.56818 3.86311 4.02248 4.07148 4.14373 4.23377 4.27334 4.41086 4.49846 4.55903 4.74624 4.78499 4.82301 4.91365 4.97384 5.06650 5.10638 5.25540 5.29467 5.29655 5.32533 5.36026 5.41081 5.58168 5.68871 6.06037 6.74191 7.30140 8.87152 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.039147 B = 0.004771 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.083819 B = 5867.524825 C = 6298.772750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.085 0.915 4 C -0.119 4.119 5 C -0.108 4.108 6 C -0.121 4.121 7 C -0.534 4.534 8 H 0.167 0.833 9 S 2.389 3.611 10 O -0.992 6.992 11 O -0.986 6.986 12 C -0.576 4.576 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.977 3.023 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.261 1.261 22 C -0.113 4.113 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.000 1.000 35 H 0.001 0.999 36 H 0.267 0.733 37 H 0.075 0.925 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.985 8.452 -17.096 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.103 0.897 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.160 4.160 7 C -0.648 4.648 8 H 0.185 0.815 9 S 2.581 3.419 10 O -0.989 6.989 11 O -0.983 6.983 12 C -0.707 4.707 13 C -0.017 4.017 14 C -0.579 4.579 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.800 3.200 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.152 4.152 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.448 7.938 -16.187 21.908 hybrid contribution 1.232 -0.055 0.284 1.266 sum -11.215 7.883 -15.903 20.996 Atomic orbital electron populations 1.21874 0.94253 1.02173 1.02556 1.21081 0.96058 0.99848 0.92933 0.89657 1.21682 0.95510 1.00888 0.97571 1.21494 0.95708 1.01417 0.96070 1.21669 1.02171 0.99631 0.92507 1.29944 1.06607 1.14169 1.14045 0.81542 1.08700 0.79281 0.75507 0.78374 1.93466 1.82595 1.73392 1.49458 1.93460 1.82416 1.34651 1.87752 1.30108 1.20709 1.11222 1.08662 1.18799 0.97067 0.94451 0.91393 1.21543 0.90953 1.37150 1.08264 0.90214 1.26187 1.05241 0.94437 0.94607 1.70125 1.37634 1.37967 1.11955 0.85324 0.77582 0.79047 0.78044 1.18609 1.21085 1.18562 1.21616 0.89572 1.02753 1.01278 0.92575 0.92793 0.90956 0.92172 0.89923 0.90245 0.89954 0.88879 0.90696 0.83474 0.83599 0.98191 0.98066 0.92450 0.90672 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.19 71.98 0.66 -1.39 16 2 C -0.08 -1.22 2.72 -10.79 -0.03 -1.25 16 3 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.12 -1.61 5.20 30.60 0.16 -1.45 16 5 C -0.11 -1.49 5.92 30.60 0.18 -1.31 16 6 C -0.12 -2.32 4.95 30.60 0.15 -2.17 16 7 C -0.53 -11.92 2.58 30.61 0.08 -11.84 16 8 H 0.17 2.70 8.14 -2.39 -0.02 2.68 16 9 S 2.39 86.00 4.24 -56.49 -0.24 85.76 16 10 O -0.99 -43.25 18.10 -127.37 -2.30 -45.55 16 11 O -0.99 -42.53 17.91 -127.37 -2.28 -44.81 16 12 C -0.58 -21.81 5.29 71.98 0.38 -21.43 16 13 C 0.02 1.15 4.98 29.85 0.15 1.30 16 14 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 15 H 0.08 4.06 7.74 -2.91 -0.02 4.03 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 17 N -0.94 -58.51 13.29 21.45 0.28 -58.23 16 18 Si 0.98 43.62 29.54 68.60 2.03 45.64 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 22 C -0.11 -2.43 4.49 30.61 0.14 -2.30 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.57 6.56 -2.39 -0.02 1.55 16 31 H 0.07 1.59 8.06 -2.39 -0.02 1.57 16 32 H 0.15 4.68 6.87 -2.39 -0.02 4.66 16 33 H 0.15 4.63 8.14 -2.39 -0.02 4.61 16 34 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 35 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -78.63 315.82 1.06 -77.58 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.00 Total: 11.54 kcal Atomic # 6 Polarization: -74.50 SS G_CDS: 2.57 Total: -71.93 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.28 Total: -58.23 kcal Atomic # 8 Polarization: -85.78 SS G_CDS: -4.59 Total: -90.36 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 86.00 SS G_CDS: -0.24 Total: 85.76 kcal Total: -78.63 1.06 -77.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084254262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.450 kcal (2) G-P(sol) polarization free energy of solvation -78.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds