Wall clock time and date at job start Mon Mar 30 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47257 * 2 1 4 4 C 1.53000 * 109.47407 * 239.99829 * 2 1 3 5 5 C 1.52996 * 109.47063 * 300.00147 * 4 2 1 6 6 C 1.53001 * 109.47340 * 299.99859 * 5 4 2 7 7 C 1.53002 * 109.47119 * 59.99724 * 6 5 4 8 8 H 1.09000 * 109.46967 * 60.00303 * 7 6 5 9 9 S 1.81398 * 109.47206 * 180.02562 * 7 6 5 10 10 O 1.42105 * 108.57879 * 190.51327 * 9 7 6 11 11 O 1.42097 * 108.57629 * 59.49088 * 9 7 6 12 12 C 1.81391 * 101.92304 * 305.00246 * 9 7 6 13 13 C 1.53001 * 109.47348 * 179.97438 * 12 9 7 14 14 C 1.50698 * 109.47176 * 179.97438 * 13 12 9 15 15 H 1.07994 * 120.00378 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00043 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99618 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00248 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47254 * 60.00276 * 18 16 14 20 20 H 1.48498 * 109.47037 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47185 * 300.00531 * 18 16 14 22 22 C 1.52998 * 109.47240 * 119.99664 * 2 1 3 23 23 H 1.08999 * 109.47286 * 300.00333 * 1 2 3 24 24 H 1.09001 * 109.47189 * 60.00047 * 1 2 3 25 25 H 1.08994 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46845 * 59.99914 * 4 2 1 27 27 H 1.09000 * 109.47336 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47112 * 59.99780 * 5 4 2 29 29 H 1.08999 * 109.47255 * 179.97438 * 5 4 2 30 30 H 1.09000 * 109.46953 * 300.00018 * 6 5 4 31 31 H 1.08994 * 109.47338 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.47583 * 300.00163 * 12 9 7 33 33 H 1.09003 * 109.47643 * 59.99714 * 12 9 7 34 34 H 1.08998 * 109.46690 * 299.99953 * 13 12 9 35 35 H 1.09002 * 109.47143 * 60.00103 * 13 12 9 36 36 H 0.97004 * 119.99712 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.47435 * 300.00472 * 22 2 1 38 38 H 1.09000 * 109.47327 * 180.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1637 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 16 2.1352 -3.0184 2.7305 10 8 1.4612 -2.4908 3.8648 11 8 3.5560 -3.0172 2.7050 12 6 1.5535 -4.7133 2.4491 13 6 1.9800 -5.6001 3.6207 14 6 1.4962 -7.0080 3.3872 15 1 0.9405 -7.2467 2.4925 16 6 1.7639 -7.9919 4.3153 17 7 2.4411 -7.7013 5.4047 18 14 1.1636 -9.7369 4.0263 19 1 1.7528 -10.2611 2.7680 20 1 1.5777 -10.5976 5.1634 21 1 -0.3175 -9.7394 3.9179 22 6 2.0400 -0.7212 1.2493 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6767 -0.2074 -2.1392 27 1 3.1301 -0.7217 -1.2490 28 1 0.4401 -2.1637 -1.2492 29 1 1.8931 -2.6775 -2.1393 30 1 3.1300 -2.8850 0.0001 31 1 1.6771 -3.9127 -0.0001 32 1 0.4665 -4.7157 2.3680 33 1 1.9874 -5.0979 1.5260 34 1 3.0670 -5.5977 3.7012 35 1 1.5464 -5.2157 4.5439 36 1 2.6292 -8.3934 6.0579 37 1 1.6767 -0.2074 2.1392 38 1 3.1300 -0.7208 1.2495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084254269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:06 Heat of formation + Delta-G solvation = -131.744345 kcal Electronic energy + Delta-G solvation = -18343.631151 eV Core-core repulsion = 15504.018906 eV Total energy + Delta-G solvation = -2839.612245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.99779 -37.97002 -37.01626 -35.88977 -33.41608 -32.84056 -31.97771 -27.95893 -27.35717 -24.38483 -23.42289 -22.94810 -19.83363 -19.60430 -18.89011 -17.84842 -17.01383 -16.84415 -16.50820 -16.07575 -15.47704 -15.19275 -14.90217 -14.82608 -14.42005 -13.95627 -13.72089 -13.52534 -13.11530 -13.03384 -12.97038 -12.88593 -12.78673 -12.49770 -12.28868 -12.17605 -12.12103 -12.06251 -11.96268 -11.69820 -11.26035 -11.13314 -10.97250 -10.63642 -10.58573 -8.25077 -6.39995 -0.90598 1.40757 1.44982 1.53111 1.92012 2.38428 2.73177 3.05134 3.08270 3.45570 3.56867 3.88435 4.06633 4.07738 4.17305 4.22057 4.29057 4.41275 4.42817 4.57207 4.75826 4.79401 4.88988 4.91238 5.00249 5.05816 5.12487 5.23948 5.29696 5.30328 5.35767 5.38725 5.42172 5.63048 5.69068 6.06301 6.74435 7.30368 8.87346 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.034946 B = 0.005022 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.034486 B = 5574.266274 C = 5942.784876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.079 4.079 3 H 0.085 0.915 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.536 4.536 8 H 0.164 0.836 9 S 2.389 3.611 10 O -0.993 6.993 11 O -0.986 6.986 12 C -0.577 4.577 13 C 0.022 3.978 14 C -0.540 4.540 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.285 1.285 21 H -0.262 1.262 22 C -0.113 4.113 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.001 0.999 35 H -0.001 1.001 36 H 0.267 0.733 37 H 0.073 0.927 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 13.713 -16.965 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.098 4.098 3 H 0.104 0.896 4 C -0.156 4.156 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.649 4.649 8 H 0.182 0.818 9 S 2.581 3.419 10 O -0.990 6.990 11 O -0.983 6.983 12 C -0.707 4.707 13 C -0.017 4.017 14 C -0.579 4.579 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.800 3.200 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.152 4.152 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.244 13.995 -16.023 21.693 hybrid contribution -0.289 -1.177 0.240 1.235 sum -4.533 12.818 -15.782 20.831 Atomic orbital electron populations 1.22025 0.94490 1.02661 1.02354 1.21027 0.96633 0.99200 0.92960 0.89626 1.21642 1.00804 0.95646 0.97544 1.21532 1.01933 0.95404 0.96057 1.21678 1.02037 0.99803 0.92421 1.29952 1.13235 1.07562 1.14120 0.81842 1.08702 0.75471 0.79171 0.78520 1.93467 1.76701 1.78808 1.49996 1.93459 1.30054 1.86955 1.87814 1.30118 1.13025 1.18706 1.08889 1.18795 0.95712 0.95650 0.91502 1.21538 1.35934 0.93518 1.06869 0.90215 1.26183 0.95042 1.04631 0.94601 1.70128 1.40818 1.35681 1.11073 0.85322 0.79176 0.77444 0.78042 1.18561 1.21093 1.18636 1.21575 1.01531 0.90863 1.01209 0.92848 0.91157 0.91710 0.89992 0.92002 0.90111 0.90039 0.90546 0.88814 0.83619 0.83420 0.98078 0.98233 0.92461 0.90835 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.50 71.98 0.61 -1.51 16 2 C -0.08 -1.19 3.19 -10.79 -0.03 -1.22 16 3 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 4 C -0.12 -1.58 5.45 30.59 0.17 -1.42 16 5 C -0.11 -1.52 5.65 30.59 0.17 -1.35 16 6 C -0.12 -2.29 4.91 30.60 0.15 -2.14 16 7 C -0.54 -12.03 2.35 30.60 0.07 -11.96 16 8 H 0.16 2.83 6.43 -2.39 -0.02 2.81 16 9 S 2.39 86.11 4.26 -56.49 -0.24 85.87 16 10 O -0.99 -43.37 18.10 -127.37 -2.31 -45.68 16 11 O -0.99 -42.49 18.06 -127.37 -2.30 -44.79 16 12 C -0.58 -21.83 5.14 71.98 0.37 -21.46 16 13 C 0.02 1.17 4.98 29.85 0.15 1.32 16 14 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 15 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 17 N -0.94 -58.52 13.29 21.45 0.28 -58.23 16 18 Si 0.98 43.61 29.54 68.60 2.03 45.64 16 19 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 C -0.11 -2.40 4.73 30.60 0.14 -2.26 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.84 4.81 -2.39 -0.01 0.83 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.94 6.43 -2.39 -0.02 0.93 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.57 6.39 -2.39 -0.02 1.55 16 32 H 0.15 4.63 8.14 -2.39 -0.02 4.61 16 33 H 0.15 4.69 6.78 -2.39 -0.02 4.68 16 34 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -78.54 308.61 0.98 -77.56 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.02 Total: 11.67 kcal Atomic # 6 Polarization: -74.53 SS G_CDS: 2.50 Total: -72.03 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.28 Total: -58.23 kcal Atomic # 8 Polarization: -85.87 SS G_CDS: -4.61 Total: -90.47 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 86.11 SS G_CDS: -0.24 Total: 85.87 kcal Total: -78.54 0.98 -77.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084254269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.184 kcal (2) G-P(sol) polarization free energy of solvation -78.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds