Wall clock time and date at job start Mon Mar 30 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00183 * 2 1 4 4 H 1.48499 * 109.47169 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.46845 * 30.00229 * 3 2 1 6 6 H 1.48499 * 109.46995 * 149.99568 * 3 2 1 7 7 C 1.37872 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00160 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47457 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47271 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47281 * 179.97438 * 11 10 9 13 13 C 1.36909 * 124.98614 * 265.28317 * 12 11 10 14 14 C 1.34231 * 109.91262 * 180.14012 * 13 12 11 15 15 C 1.50703 * 126.56904 * 179.89245 * 14 13 12 16 16 O 1.42898 * 109.47171 * 359.68588 * 15 14 13 17 17 C 1.46385 * 106.86392 * 359.62693 * 14 13 12 18 18 C 1.39693 * 134.31707 * 180.19257 * 17 14 13 19 19 C 1.38194 * 118.04351 * 179.97438 * 18 17 14 20 20 C 1.38664 * 119.41100 * 0.06849 * 19 18 17 21 21 N 1.31593 * 121.58140 * 359.93915 * 20 19 18 22 22 C 1.32653 * 121.67151 * 0.02562 * 21 20 19 23 23 H 0.97002 * 119.99493 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47136 * 59.99632 * 9 7 2 25 25 H 1.09007 * 109.46414 * 300.00393 * 9 7 2 26 26 H 1.08998 * 109.47742 * 59.99354 * 10 9 7 27 27 H 1.09011 * 109.47057 * 299.99851 * 10 9 7 28 28 H 1.08998 * 109.47197 * 59.99847 * 11 10 9 29 29 H 1.08998 * 109.47121 * 299.99551 * 11 10 9 30 30 H 1.08004 * 125.04749 * 359.97438 * 13 12 11 31 31 H 1.09002 * 109.47152 * 239.68372 * 15 14 13 32 32 H 1.09001 * 109.46980 * 119.68472 * 15 14 13 33 33 H 0.96701 * 113.99881 * 180.02562 * 16 15 14 34 34 H 1.08002 * 120.97699 * 0.02562 * 18 17 14 35 35 H 1.08005 * 120.29521 * 180.02562 * 19 18 17 36 36 H 1.07992 * 119.21163 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0009 12 7 6.0398 -4.0179 0.0014 13 6 6.3884 -4.7269 1.1196 14 6 6.7963 -5.9576 0.7719 15 6 7.2658 -7.0446 1.7040 16 8 7.2229 -6.5687 3.0508 17 6 6.6915 -6.0437 -0.6857 18 6 6.9575 -7.0419 -1.6260 19 6 6.7319 -6.7556 -2.9590 20 6 6.2564 -5.5027 -3.3153 21 7 6.0124 -4.5760 -2.4134 22 6 6.2094 -4.7941 -1.1199 23 1 -0.4849 0.8401 -0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8751 -0.6805 -0.8889 26 1 3.6584 -3.1503 -0.8891 27 1 3.6577 -3.1506 0.8908 28 1 5.9149 -2.1229 0.8909 29 1 5.9148 -2.1229 -0.8890 30 1 6.3446 -4.3508 2.1311 31 1 8.2882 -7.3246 1.4500 32 1 6.6158 -7.9140 1.6050 33 1 7.5128 -7.2175 3.7066 34 1 7.3278 -8.0093 -1.3201 35 1 6.9248 -7.5008 -3.7165 36 1 6.0817 -5.2823 -4.3580 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091017864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:32 Heat of formation + Delta-G solvation = 13.447508 kcal Electronic energy + Delta-G solvation = -18555.495144 eV Core-core repulsion = 15619.027690 eV Total energy + Delta-G solvation = -2936.467454 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51071 -38.00965 -36.94483 -34.77966 -33.08385 -31.98633 -30.48643 -29.36482 -27.70694 -25.38944 -23.79181 -22.97577 -21.68257 -20.25285 -19.52545 -17.77818 -17.19984 -16.52730 -16.40786 -15.75345 -15.38570 -14.59160 -14.42735 -14.37008 -14.11561 -13.81205 -13.16259 -12.94246 -12.85426 -12.50363 -11.98647 -11.87530 -11.66336 -11.53562 -11.13081 -10.83052 -10.60694 -10.06145 -10.04697 -9.84168 -9.73042 -9.23688 -9.22101 -8.55080 -8.26829 -7.72390 -6.05055 -4.03690 1.09209 1.46229 2.68628 2.78693 3.30394 3.37412 3.39868 3.98881 3.99994 4.43958 4.45591 4.66163 4.90047 4.96840 5.13225 5.23530 5.27560 5.32565 5.38162 5.49660 5.55090 5.59772 5.73599 5.81185 5.95265 6.26671 6.31001 6.43311 6.52321 6.67208 6.77908 7.14756 7.22088 7.29339 7.35923 7.48693 7.76020 8.16246 8.52565 8.99489 9.56507 11.08474 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.004663 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.213618 B = 6003.483603 C = 6810.961197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.115 4.115 11 C 0.104 3.896 12 N -0.463 5.463 13 C 0.101 3.899 14 C -0.196 4.196 15 C 0.160 3.840 16 O -0.571 6.571 17 C -0.145 4.145 18 C -0.036 4.036 19 C -0.207 4.207 20 C 0.132 3.868 21 N -0.488 5.488 22 C 0.292 3.708 23 H 0.263 0.737 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.178 0.822 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.382 0.618 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.059 -15.226 0.218 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.153 4.153 11 C -0.016 4.016 12 N -0.146 5.146 13 C -0.026 4.026 14 C -0.203 4.203 15 C 0.082 3.918 16 O -0.377 6.377 17 C -0.152 4.152 18 C -0.063 4.063 19 C -0.229 4.229 20 C -0.034 4.034 21 N -0.200 5.200 22 C 0.060 3.940 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.195 0.805 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.228 0.772 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 17.248 -13.354 -0.247 21.815 hybrid contribution 0.714 -0.373 0.421 0.909 sum 17.961 -13.727 0.174 22.607 Atomic orbital electron populations 1.69919 1.06317 1.26911 1.51025 1.25026 0.94747 0.99167 0.94500 0.86761 0.80288 0.83562 0.78564 1.20208 1.21330 1.19047 1.21077 0.89243 0.94544 1.50970 0.91087 1.19509 0.97524 0.91261 0.96429 1.21843 0.90411 1.00854 1.02175 1.22232 0.97574 0.78008 1.03798 1.44254 1.54000 1.12978 1.03357 1.21677 0.98351 0.91393 0.91163 1.19765 1.13299 0.96220 0.91012 1.20098 0.98474 0.93038 0.80158 1.86431 1.90445 1.44483 1.16316 1.19548 1.07019 0.95341 0.93289 1.20832 0.96020 0.97551 0.91847 1.21784 1.05741 0.98970 0.96373 1.22441 0.94540 0.88621 0.97836 1.66491 1.18602 1.35555 0.99324 1.18360 0.99354 0.88948 0.87377 0.92694 0.96435 0.96729 0.91942 0.92262 0.89464 0.89395 0.80453 0.93127 0.93003 0.77153 0.85354 0.84887 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.22 4.04 -27.89 -0.11 -0.34 16 10 C -0.11 -2.38 5.48 -26.73 -0.15 -2.52 16 11 C 0.10 1.77 6.05 -4.04 -0.02 1.75 16 12 N -0.46 -7.70 2.77 -116.26 -0.32 -8.02 16 13 C 0.10 1.49 10.65 -16.70 -0.18 1.32 16 14 C -0.20 -2.68 6.29 -102.76 -0.65 -3.33 16 15 C 0.16 1.59 7.65 36.01 0.28 1.87 16 16 O -0.57 -5.51 12.95 -35.23 -0.46 -5.97 16 17 C -0.14 -2.13 6.37 -105.11 -0.67 -2.80 16 18 C -0.04 -0.42 10.22 -39.05 -0.40 -0.82 16 19 C -0.21 -2.28 10.10 -39.44 -0.40 -2.68 16 20 C 0.13 1.74 11.15 -17.50 -0.20 1.54 16 21 N -0.49 -8.32 10.39 -12.27 -0.13 -8.44 16 22 C 0.29 5.01 7.91 -155.69 -1.23 3.78 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 25 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 26 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 28 H 0.09 1.30 8.12 -51.93 -0.42 0.87 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.18 2.30 7.81 -52.48 -0.41 1.89 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.38 1.71 9.12 45.56 0.42 2.13 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 310.32 15.07 4.68 4.68 Total: -1.00 -35.05 310.32 -8.43 -43.49 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.15 Total: 0.46 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -4.16 Total: -15.89 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.32 Total: -44.00 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.46 Total: -5.97 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.05 -8.43 -43.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091017864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.933 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds