Wall clock time and date at job start Mon Mar 30 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00183 * 2 1 4 4 H 1.48499 * 109.47169 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.46845 * 30.00229 * 3 2 1 6 6 H 1.48499 * 109.46995 * 149.99568 * 3 2 1 7 7 C 1.37872 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00160 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47457 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47271 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47281 * 179.97438 * 11 10 9 13 13 C 1.36909 * 124.98614 * 265.28317 * 12 11 10 14 14 C 1.34231 * 109.91262 * 180.14012 * 13 12 11 15 15 C 1.50703 * 126.56904 * 179.89245 * 14 13 12 16 16 O 1.42898 * 109.47171 * 359.68588 * 15 14 13 17 17 C 1.46385 * 106.86392 * 359.62693 * 14 13 12 18 18 C 1.39693 * 134.31707 * 180.19257 * 17 14 13 19 19 C 1.38194 * 118.04351 * 179.97438 * 18 17 14 20 20 C 1.38664 * 119.41100 * 0.06849 * 19 18 17 21 21 N 1.31593 * 121.58140 * 359.93915 * 20 19 18 22 22 C 1.32653 * 121.67151 * 0.02562 * 21 20 19 23 23 H 0.97002 * 119.99493 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47136 * 59.99632 * 9 7 2 25 25 H 1.09007 * 109.46414 * 300.00393 * 9 7 2 26 26 H 1.08998 * 109.47742 * 59.99354 * 10 9 7 27 27 H 1.09011 * 109.47057 * 299.99851 * 10 9 7 28 28 H 1.08998 * 109.47197 * 59.99847 * 11 10 9 29 29 H 1.08998 * 109.47121 * 299.99551 * 11 10 9 30 30 H 1.08004 * 125.04749 * 359.97438 * 13 12 11 31 31 H 1.09002 * 109.47152 * 239.68372 * 15 14 13 32 32 H 1.09001 * 109.46980 * 119.68472 * 15 14 13 33 33 H 0.96701 * 113.99881 * 180.02562 * 16 15 14 34 34 H 1.08002 * 120.97699 * 0.02562 * 18 17 14 35 35 H 1.08005 * 120.29521 * 180.02562 * 19 18 17 36 36 H 1.07992 * 119.21163 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0009 12 7 6.0398 -4.0179 0.0014 13 6 6.3884 -4.7269 1.1196 14 6 6.7963 -5.9576 0.7719 15 6 7.2658 -7.0446 1.7040 16 8 7.2229 -6.5687 3.0508 17 6 6.6915 -6.0437 -0.6857 18 6 6.9575 -7.0419 -1.6260 19 6 6.7319 -6.7556 -2.9590 20 6 6.2564 -5.5027 -3.3153 21 7 6.0124 -4.5760 -2.4134 22 6 6.2094 -4.7941 -1.1199 23 1 -0.4849 0.8401 -0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8751 -0.6805 -0.8889 26 1 3.6584 -3.1503 -0.8891 27 1 3.6577 -3.1506 0.8908 28 1 5.9149 -2.1229 0.8909 29 1 5.9148 -2.1229 -0.8890 30 1 6.3446 -4.3508 2.1311 31 1 8.2882 -7.3246 1.4500 32 1 6.6158 -7.9140 1.6050 33 1 7.5128 -7.2175 3.7066 34 1 7.3278 -8.0093 -1.3201 35 1 6.9248 -7.5008 -3.7165 36 1 6.0817 -5.2823 -4.3580 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091017864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:31 Heat of formation + Delta-G solvation = -10.638151 kcal Electronic energy + Delta-G solvation = -18556.539577 eV Core-core repulsion = 15619.027690 eV Total energy + Delta-G solvation = -2937.511887 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.56178 -39.04163 -37.74371 -36.38333 -34.69675 -33.54328 -31.81455 -30.35758 -29.20332 -26.65095 -25.06272 -24.16479 -22.96268 -22.03619 -20.52608 -19.06665 -18.56685 -18.02211 -17.36517 -16.69994 -16.43943 -16.31081 -15.88680 -15.43580 -15.30329 -14.88701 -14.76912 -14.23509 -14.19989 -13.76976 -13.45222 -13.28519 -12.88713 -12.69576 -12.62408 -12.40021 -11.89508 -11.85546 -11.65488 -11.48446 -11.30667 -10.86097 -10.81074 -10.27165 -9.32742 -8.77705 -8.33588 -6.39643 0.11192 0.45948 1.34722 1.36913 1.48869 1.61841 1.71293 2.33580 2.96716 3.01496 3.27853 3.42040 3.63507 3.89871 4.03392 4.05918 4.15961 4.31506 4.35352 4.47702 4.55021 4.60442 4.66576 4.71415 4.73266 4.89246 4.91082 5.04506 5.32854 5.34057 5.42222 5.52498 5.58634 5.72461 6.11844 6.17611 6.23999 6.67291 7.03095 7.12189 7.24915 8.83740 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.004663 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.213618 B = 6003.483603 C = 6810.961197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.240 1.240 7 C -0.539 4.539 8 H 0.022 0.978 9 C -0.004 4.004 10 C -0.100 4.100 11 C 0.117 3.883 12 N -0.476 5.476 13 C 0.074 3.926 14 C -0.191 4.191 15 C 0.163 3.837 16 O -0.590 6.590 17 C -0.162 4.162 18 C -0.033 4.033 19 C -0.197 4.197 20 C 0.121 3.879 21 N -0.534 5.534 22 C 0.253 3.747 23 H 0.268 0.732 24 H 0.034 0.966 25 H 0.022 0.978 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.188 0.812 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.403 0.597 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.885 -16.062 0.232 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.163 1.163 7 C -0.577 4.577 8 H 0.040 0.960 9 C -0.042 4.042 10 C -0.138 4.138 11 C -0.004 4.004 12 N -0.160 5.160 13 C -0.052 4.052 14 C -0.198 4.198 15 C 0.085 3.915 16 O -0.399 6.399 17 C -0.170 4.170 18 C -0.060 4.060 19 C -0.218 4.218 20 C -0.045 4.045 21 N -0.248 5.248 22 C 0.021 3.979 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.130 0.870 29 H 0.103 0.897 30 H 0.205 0.795 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.254 0.746 34 H 0.184 0.816 35 H 0.193 0.807 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 20.102 -14.243 -0.210 24.637 hybrid contribution -0.227 -0.305 0.335 0.507 sum 19.875 -14.547 0.125 24.630 Atomic orbital electron populations 1.70083 1.08508 1.28382 1.52313 1.26095 0.95702 1.03822 0.93706 0.85562 0.79659 0.77526 0.79325 1.19196 1.20679 1.16270 1.21418 0.92108 0.92976 1.51171 0.95957 1.19424 0.94003 0.93537 0.97245 1.21582 0.93615 0.98390 1.00220 1.21935 0.94280 0.79349 1.04831 1.44217 1.54979 1.12746 1.04082 1.21986 0.99846 0.92160 0.91158 1.20303 1.11541 0.96608 0.91367 1.20156 0.99811 0.91759 0.79731 1.86377 1.90786 1.46006 1.16736 1.19907 1.07465 0.95286 0.94303 1.21350 0.94721 0.98283 0.91602 1.22232 1.03632 0.98715 0.97184 1.23068 0.93806 0.89192 0.98436 1.66459 1.20575 1.37711 1.00044 1.18783 1.01056 0.90343 0.87670 0.92332 0.94762 0.95966 0.94888 0.93258 0.86954 0.89729 0.79484 0.90903 0.91562 0.74594 0.81590 0.80750 0.80185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.58 13.96 21.45 0.30 -61.28 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.96 44.87 27.47 68.60 1.88 46.76 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 7 C -0.54 -32.66 9.66 25.60 0.25 -32.41 16 8 H 0.02 1.51 7.99 -2.91 -0.02 1.48 16 9 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 10 C -0.10 -4.28 5.48 30.59 0.17 -4.11 16 11 C 0.12 4.01 6.05 86.38 0.52 4.53 16 12 N -0.48 -16.06 2.77 -521.73 -1.45 -17.51 16 13 C 0.07 2.16 10.65 82.99 0.88 3.04 16 14 C -0.19 -4.99 6.29 -18.66 -0.12 -5.11 16 15 C 0.16 2.81 7.65 71.24 0.54 3.35 16 16 O -0.59 -10.08 12.95 -148.98 -1.93 -12.01 16 17 C -0.16 -4.60 6.37 -20.18 -0.13 -4.72 16 18 C -0.03 -0.69 10.22 22.61 0.23 -0.46 16 19 C -0.20 -3.75 10.10 22.36 0.23 -3.52 16 20 C 0.12 3.04 11.15 84.83 0.95 3.98 16 21 N -0.53 -18.47 10.39 -192.74 -2.00 -20.48 16 22 C 0.25 8.75 7.91 133.93 1.06 9.81 16 23 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 24 H 0.03 1.55 7.20 -2.38 -0.02 1.53 16 25 H 0.02 1.04 7.57 -2.38 -0.02 1.02 16 26 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.11 3.21 8.12 -2.39 -0.02 3.20 16 29 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.19 4.81 7.81 -2.91 -0.02 4.79 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.40 2.58 9.12 -74.06 -0.68 1.90 16 34 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.18 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -80.08 310.32 2.32 -77.75 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.35 Total: 11.79 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 5.17 Total: -25.03 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -3.15 Total: -99.26 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.93 Total: -12.01 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Total: -80.08 2.32 -77.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091017864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.114 kcal (2) G-P(sol) polarization free energy of solvation -80.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds