Wall clock time and date at job start Mon Mar 30 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46898 * 2 1 4 4 C 1.53001 * 109.47014 * 240.00058 * 2 1 3 5 5 H 1.09001 * 109.46808 * 300.00048 * 4 2 1 6 6 C 1.53001 * 109.46577 * 180.02562 * 4 2 1 7 7 O 1.42893 * 109.47510 * 60.00220 * 4 2 1 8 8 N 1.46496 * 109.46929 * 119.99826 * 2 1 3 9 9 C 1.37856 * 126.53431 * 60.02494 * 8 2 1 10 10 C 1.40183 * 125.30655 * 359.94294 * 9 8 2 11 11 H 1.07994 * 120.00275 * 357.87564 * 10 9 8 12 12 C 1.40355 * 119.99779 * 177.87740 * 10 9 8 13 13 N 1.30587 * 119.99995 * 6.89916 * 12 10 9 14 14 Si 1.86798 * 119.99870 * 186.89805 * 12 10 9 15 15 H 1.48501 * 109.46964 * 94.96624 * 14 12 10 16 16 H 1.48501 * 109.47221 * 214.96835 * 14 12 10 17 17 H 1.48502 * 109.46841 * 334.96606 * 14 12 10 18 18 N 1.32469 * 109.38745 * 179.97438 * 9 8 2 19 19 C 1.33977 * 109.77979 * 359.97438 * 18 9 8 20 20 C 1.40539 * 133.18705 * 180.02562 * 19 18 9 21 21 C 1.36360 * 119.84069 * 179.97438 * 20 19 18 22 22 C 1.39039 * 120.76384 * 0.02562 * 21 20 19 23 23 C 1.37967 * 120.57147 * 0.02562 * 22 21 20 24 24 C 1.37961 * 126.53721 * 240.00101 * 8 2 1 25 25 H 1.08999 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47098 * 300.00547 * 1 2 3 27 27 H 1.09004 * 109.47035 * 60.00179 * 1 2 3 28 28 H 1.09010 * 109.46702 * 179.97438 * 6 4 2 29 29 H 1.09001 * 109.47388 * 299.99444 * 6 4 2 30 30 H 1.08994 * 109.47442 * 59.99890 * 6 4 2 31 31 H 0.96699 * 114.00098 * 180.02562 * 7 4 2 32 32 H 0.96997 * 119.99577 * 180.02562 * 13 12 10 33 33 H 1.07993 * 120.07852 * 359.97438 * 20 19 18 34 34 H 1.08006 * 119.61687 * 179.71907 * 21 20 19 35 35 H 1.08000 * 119.71471 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.11344 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6767 -1.7489 -1.2492 6 6 3.5700 -0.7217 -1.2488 7 8 1.5638 -0.0477 -2.4160 8 7 2.0183 -0.6906 1.1962 9 6 1.7701 -2.0006 1.5463 10 6 0.9961 -2.9045 0.8053 11 1 0.5104 -2.5812 -0.1034 12 6 0.8523 -4.2298 1.2446 13 7 1.3249 -4.5868 2.4084 14 14 -0.0150 -5.4828 0.1644 15 1 0.9909 -6.2295 -0.6330 16 1 -0.7735 -6.4320 1.0183 17 1 -0.9520 -4.7831 -0.7509 18 7 2.3764 -2.2719 2.6924 19 6 3.0281 -1.1858 3.1288 20 6 3.8155 -0.9279 4.2640 21 6 4.3632 0.3079 4.4434 22 6 4.1520 1.3210 3.5149 23 6 3.3823 1.0949 2.3925 24 6 2.8146 -0.1540 2.1868 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.9334 -1.2360 -2.1387 29 1 3.9338 0.3058 -1.2487 30 1 3.9330 -1.2358 -0.3589 31 1 1.8488 -0.4514 -3.2472 32 1 1.2258 -5.5027 2.7118 33 1 3.9864 -1.7067 4.9924 34 1 4.9640 0.5034 5.3194 35 1 4.5936 2.2937 3.6741 36 1 3.2234 1.8871 1.6758 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094654829.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:46 Heat of formation + Delta-G solvation = 11.189467 kcal Electronic energy + Delta-G solvation = -20008.106305 eV Core-core repulsion = 17071.540935 eV Total energy + Delta-G solvation = -2936.565370 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58169 -37.61896 -36.01766 -33.90880 -33.35994 -30.51898 -29.53846 -28.72784 -28.07719 -25.90671 -23.53837 -21.47501 -21.39537 -20.76044 -18.77117 -17.54841 -16.74990 -16.02143 -15.52266 -14.89845 -14.79401 -14.29775 -14.03729 -13.41953 -13.01037 -12.94862 -12.72720 -12.61500 -12.10663 -11.91175 -11.67835 -11.45818 -11.35001 -11.20376 -11.01722 -10.78984 -10.54444 -10.38865 -10.26090 -10.08045 -9.53735 -9.33310 -9.01171 -7.92735 -7.25868 -6.87936 -6.71844 -4.65540 2.23807 2.68631 2.95470 2.99122 3.02260 3.66145 3.87343 4.09860 4.67630 4.95394 5.07146 5.30881 5.48709 5.50656 5.63958 5.74434 5.84824 5.86672 6.00005 6.05141 6.18766 6.24390 6.33660 6.43607 6.50238 6.53723 6.65546 6.76205 6.86386 7.00640 7.24943 7.45586 7.59959 7.72093 7.82201 7.89415 7.95539 8.29859 8.60316 8.99290 9.92408 10.17687 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016070 B = 0.009765 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.006249 B = 2866.737605 C = 4158.836839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.172 3.828 3 H 0.080 0.920 4 C 0.084 3.916 5 H 0.081 0.919 6 C -0.177 4.177 7 O -0.569 6.569 8 N -0.530 5.530 9 C 0.424 3.576 10 C -0.444 4.444 11 H 0.093 0.907 12 C 0.078 3.922 13 N -0.714 5.714 14 Si 0.912 3.088 15 H -0.268 1.268 16 H -0.273 1.273 17 H -0.260 1.260 18 N -0.537 5.537 19 C 0.110 3.890 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.181 4.181 23 C -0.103 4.103 24 C -0.002 4.002 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.375 0.625 32 H 0.279 0.721 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 4.307 -6.103 7.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.066 3.934 3 H 0.098 0.902 4 C 0.025 3.975 5 H 0.099 0.901 6 C -0.235 4.235 7 O -0.373 6.373 8 N -0.227 5.227 9 C 0.187 3.813 10 C -0.481 4.481 11 H 0.110 0.890 12 C -0.150 4.150 13 N -0.335 5.335 14 Si 0.735 3.265 15 H -0.193 1.193 16 H -0.198 1.198 17 H -0.184 1.184 18 N -0.260 5.260 19 C -0.018 4.018 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.202 4.202 23 C -0.125 4.125 24 C -0.109 4.109 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.222 0.778 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.245 3.793 -5.193 6.435 hybrid contribution 0.011 -0.079 -1.267 1.270 sum 0.256 3.713 -6.460 7.455 Atomic orbital electron populations 1.22176 0.94257 1.04132 1.01479 1.20493 0.94833 0.95235 0.82796 0.90171 1.22248 0.93124 0.97079 0.85086 0.90079 1.22384 0.96452 1.01984 1.02642 1.86401 1.77199 1.57932 1.15807 1.45492 1.46364 1.12117 1.18774 1.20399 0.91959 0.79243 0.89691 1.18641 1.27758 0.93383 1.08337 0.88959 1.25866 0.95035 0.99009 0.95078 1.69974 1.29398 1.18623 1.15537 0.86234 0.79821 0.80104 0.80312 1.19304 1.19830 1.18396 1.71401 1.19899 1.23108 1.11601 1.19553 0.97220 0.90743 0.94268 1.19779 1.01251 0.96835 0.97176 1.20215 1.01747 0.93433 0.99014 1.20288 1.04866 0.98547 0.96472 1.19608 1.00809 0.93421 0.98633 1.18849 1.01796 0.96473 0.93788 0.90295 0.92819 0.91414 0.92820 0.92656 0.90956 0.77807 0.90970 0.87430 0.87845 0.87875 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.05 37.16 0.34 -2.58 16 2 C 0.17 3.27 2.62 -67.93 -0.18 3.10 16 3 H 0.08 1.48 7.61 -51.93 -0.40 1.09 16 4 C 0.08 1.44 3.02 -26.73 -0.08 1.36 16 5 H 0.08 1.50 5.57 -51.93 -0.29 1.21 16 6 C -0.18 -2.95 9.38 37.16 0.35 -2.60 16 7 O -0.57 -8.28 12.65 -35.23 -0.45 -8.73 16 8 N -0.53 -12.13 1.94 -106.41 -0.21 -12.33 16 9 C 0.42 10.98 7.01 -155.67 -1.09 9.89 16 10 C -0.44 -10.86 7.44 -38.06 -0.28 -11.14 16 11 H 0.09 2.06 4.41 -52.49 -0.23 1.83 16 12 C 0.08 1.87 5.49 -17.29 -0.09 1.78 16 13 N -0.71 -18.52 11.88 55.57 0.66 -17.86 16 14 Si 0.91 17.48 29.57 -169.99 -5.03 12.45 16 15 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 18 N -0.54 -15.09 9.35 -10.31 -0.10 -15.19 16 19 C 0.11 2.83 7.21 -84.89 -0.61 2.22 16 20 C -0.13 -2.95 10.07 -39.39 -0.40 -3.34 16 21 C -0.12 -2.43 9.96 -39.96 -0.40 -2.83 16 22 C -0.18 -3.47 10.04 -39.38 -0.40 -3.87 16 23 C -0.10 -2.13 9.88 -39.50 -0.39 -2.52 16 24 C 0.00 -0.04 6.88 -83.75 -0.58 -0.62 16 25 H 0.08 1.51 5.49 -51.93 -0.28 1.23 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 28 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.45 7.60 -51.93 -0.39 1.05 16 31 H 0.38 3.79 9.08 45.56 0.41 4.20 16 32 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 33 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 34 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.09 1.75 7.74 -52.49 -0.41 1.35 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -29.52 296.83 -8.11 -37.63 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -3.66 Total: 10.73 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.81 Total: -11.17 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.36 Total: -45.39 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.45 Total: -8.73 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.52 -8.11 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094654829.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.823 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds