Wall clock time and date at job start Mon Mar 30 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46898 * 2 1 4 4 C 1.53001 * 109.47014 * 240.00058 * 2 1 3 5 5 H 1.09001 * 109.46808 * 300.00048 * 4 2 1 6 6 C 1.53001 * 109.46577 * 180.02562 * 4 2 1 7 7 O 1.42893 * 109.47510 * 60.00220 * 4 2 1 8 8 N 1.46496 * 109.46929 * 119.99826 * 2 1 3 9 9 C 1.37856 * 126.53431 * 60.02494 * 8 2 1 10 10 C 1.40183 * 125.30655 * 359.94294 * 9 8 2 11 11 H 1.07994 * 120.00275 * 357.87564 * 10 9 8 12 12 C 1.40355 * 119.99779 * 177.87740 * 10 9 8 13 13 N 1.30587 * 119.99995 * 6.89916 * 12 10 9 14 14 Si 1.86798 * 119.99870 * 186.89805 * 12 10 9 15 15 H 1.48501 * 109.46964 * 94.96624 * 14 12 10 16 16 H 1.48501 * 109.47221 * 214.96835 * 14 12 10 17 17 H 1.48502 * 109.46841 * 334.96606 * 14 12 10 18 18 N 1.32469 * 109.38745 * 179.97438 * 9 8 2 19 19 C 1.33977 * 109.77979 * 359.97438 * 18 9 8 20 20 C 1.40539 * 133.18705 * 180.02562 * 19 18 9 21 21 C 1.36360 * 119.84069 * 179.97438 * 20 19 18 22 22 C 1.39039 * 120.76384 * 0.02562 * 21 20 19 23 23 C 1.37967 * 120.57147 * 0.02562 * 22 21 20 24 24 C 1.37961 * 126.53721 * 240.00101 * 8 2 1 25 25 H 1.08999 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47098 * 300.00547 * 1 2 3 27 27 H 1.09004 * 109.47035 * 60.00179 * 1 2 3 28 28 H 1.09010 * 109.46702 * 179.97438 * 6 4 2 29 29 H 1.09001 * 109.47388 * 299.99444 * 6 4 2 30 30 H 1.08994 * 109.47442 * 59.99890 * 6 4 2 31 31 H 0.96699 * 114.00098 * 180.02562 * 7 4 2 32 32 H 0.96997 * 119.99577 * 180.02562 * 13 12 10 33 33 H 1.07993 * 120.07852 * 359.97438 * 20 19 18 34 34 H 1.08006 * 119.61687 * 179.71907 * 21 20 19 35 35 H 1.08000 * 119.71471 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.11344 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6767 -1.7489 -1.2492 6 6 3.5700 -0.7217 -1.2488 7 8 1.5638 -0.0477 -2.4160 8 7 2.0183 -0.6906 1.1962 9 6 1.7701 -2.0006 1.5463 10 6 0.9961 -2.9045 0.8053 11 1 0.5104 -2.5812 -0.1034 12 6 0.8523 -4.2298 1.2446 13 7 1.3249 -4.5868 2.4084 14 14 -0.0150 -5.4828 0.1644 15 1 0.9909 -6.2295 -0.6330 16 1 -0.7735 -6.4320 1.0183 17 1 -0.9520 -4.7831 -0.7509 18 7 2.3764 -2.2719 2.6924 19 6 3.0281 -1.1858 3.1288 20 6 3.8155 -0.9279 4.2640 21 6 4.3632 0.3079 4.4434 22 6 4.1520 1.3210 3.5149 23 6 3.3823 1.0949 2.3925 24 6 2.8146 -0.1540 2.1868 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.9334 -1.2360 -2.1387 29 1 3.9338 0.3058 -1.2487 30 1 3.9330 -1.2358 -0.3589 31 1 1.8488 -0.4514 -3.2472 32 1 1.2258 -5.5027 2.7118 33 1 3.9864 -1.7067 4.9924 34 1 4.9640 0.5034 5.3194 35 1 4.5936 2.2937 3.6741 36 1 3.2234 1.8871 1.6758 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094654829.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:45 Heat of formation + Delta-G solvation = -7.461470 kcal Electronic energy + Delta-G solvation = -20008.915070 eV Core-core repulsion = 17071.540935 eV Total energy + Delta-G solvation = -2937.374136 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.30472 -39.00611 -37.61497 -35.54038 -35.03294 -32.14033 -30.93369 -30.48309 -29.73766 -27.67820 -24.97681 -23.14661 -23.00015 -22.46084 -20.42899 -19.12876 -18.32390 -17.64053 -17.05064 -16.54037 -16.32006 -15.73200 -15.62565 -14.98329 -14.63063 -14.57148 -14.40261 -14.09744 -13.47414 -13.38921 -13.24864 -13.03293 -12.81044 -12.70719 -12.55691 -12.34699 -12.15173 -11.94574 -11.85446 -11.60913 -11.05182 -10.86939 -10.75059 -9.78903 -9.01316 -8.61960 -8.49284 -6.51463 0.52310 1.01227 1.40803 1.44291 1.56102 2.08459 2.28435 2.35642 3.14942 3.39623 3.63655 3.69758 3.92578 3.99512 4.06340 4.32168 4.34602 4.41319 4.46854 4.65418 4.68849 4.81290 4.84655 4.89354 4.93517 5.08798 5.11925 5.16879 5.25561 5.34486 5.59118 5.71982 5.92728 6.00661 6.17861 6.24117 6.55848 6.80658 6.84732 7.22348 8.10372 8.43727 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016070 B = 0.009765 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.006249 B = 2866.737605 C = 4158.836839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 H 0.089 0.911 4 C 0.097 3.903 5 H 0.065 0.935 6 C -0.168 4.168 7 O -0.565 6.565 8 N -0.526 5.526 9 C 0.402 3.598 10 C -0.462 4.462 11 H 0.108 0.892 12 C 0.032 3.968 13 N -0.767 5.767 14 Si 0.990 3.010 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.245 1.245 18 N -0.587 5.587 19 C 0.056 3.944 20 C -0.150 4.150 21 C -0.116 4.116 22 C -0.164 4.164 23 C -0.109 4.109 24 C -0.018 4.018 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.398 0.602 32 H 0.282 0.718 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 6.183 -7.774 9.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.107 0.893 4 C 0.037 3.963 5 H 0.082 0.918 6 C -0.226 4.226 7 O -0.373 6.373 8 N -0.223 5.223 9 C 0.163 3.837 10 C -0.499 4.499 11 H 0.125 0.875 12 C -0.191 4.191 13 N -0.390 5.390 14 Si 0.809 3.191 15 H -0.187 1.187 16 H -0.196 1.196 17 H -0.168 1.168 18 N -0.312 5.312 19 C -0.069 4.069 20 C -0.171 4.171 21 C -0.136 4.136 22 C -0.184 4.184 23 C -0.130 4.130 24 C -0.126 4.126 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.248 0.752 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.453 5.715 -6.887 8.961 hybrid contribution 0.066 -0.467 -0.687 0.833 sum 0.519 5.248 -7.573 9.229 Atomic orbital electron populations 1.22098 0.93538 1.03280 1.02219 1.20788 0.95467 0.95475 0.82465 0.89278 1.21878 0.93120 0.95916 0.85354 0.91757 1.22292 0.96170 1.02237 1.01905 1.86354 1.77099 1.57750 1.16130 1.45562 1.45831 1.11320 1.19539 1.20683 0.92505 0.80717 0.89777 1.19038 1.28131 0.93882 1.08881 0.87450 1.26940 0.95176 1.00884 0.96119 1.70121 1.31673 1.19285 1.17901 0.85077 0.78670 0.77052 0.78292 1.18742 1.19637 1.16835 1.71264 1.21504 1.25134 1.13322 1.20066 0.99130 0.91400 0.96343 1.20055 1.01878 0.98457 0.96695 1.20649 1.00742 0.92003 1.00255 1.20862 1.02668 1.00022 0.94830 1.20024 1.00410 0.92793 0.99819 1.19234 1.02400 0.97218 0.93701 0.91877 0.93689 0.88901 0.90126 0.91818 0.95052 0.75201 0.90747 0.87947 0.83956 0.83432 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.05 71.98 0.65 -4.75 16 2 C 0.16 6.06 2.62 44.99 0.12 6.18 16 3 H 0.09 3.14 7.61 -2.39 -0.02 3.12 16 4 C 0.10 3.20 3.02 30.59 0.09 3.29 16 5 H 0.06 2.36 5.57 -2.39 -0.01 2.34 16 6 C -0.17 -5.42 9.38 71.98 0.68 -4.74 16 7 O -0.57 -14.77 12.65 -148.98 -1.88 -16.65 16 8 N -0.53 -24.57 1.94 -490.57 -0.95 -25.52 16 9 C 0.40 21.78 7.01 133.69 0.94 22.72 16 10 C -0.46 -23.38 7.44 23.26 0.17 -23.21 16 11 H 0.11 4.88 4.41 -2.91 -0.01 4.87 16 12 C 0.03 1.57 5.49 85.39 0.47 2.04 16 13 N -0.77 -41.98 11.88 21.89 0.26 -41.72 16 14 Si 0.99 36.37 29.57 68.60 2.03 38.40 16 15 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 16 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 17 H -0.25 -8.32 7.11 99.48 0.71 -7.61 16 18 N -0.59 -35.01 9.35 -186.52 -1.74 -36.76 16 19 C 0.06 3.02 7.21 40.14 0.29 3.31 16 20 C -0.15 -6.97 10.07 22.39 0.23 -6.75 16 21 C -0.12 -4.33 9.96 22.02 0.22 -4.11 16 22 C -0.16 -5.71 10.04 22.40 0.22 -5.49 16 23 C -0.11 -4.30 9.88 22.32 0.22 -4.08 16 24 C -0.02 -0.85 6.88 39.05 0.27 -0.59 16 25 H 0.06 2.41 5.49 -2.39 -0.01 2.40 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.09 2.75 7.68 -2.38 -0.02 2.73 16 28 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.03 1.26 7.60 -2.39 -0.02 1.24 16 31 H 0.40 6.61 9.08 -74.06 -0.67 5.94 16 32 H 0.28 14.00 8.29 -92.71 -0.77 13.23 16 33 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.12 4.08 7.74 -2.91 -0.02 4.06 16 Total: -1.00 -68.30 296.83 2.71 -65.60 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.43 Total: 32.83 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 4.56 Total: -16.18 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -2.43 Total: -104.00 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -1.88 Total: -16.65 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -68.30 2.71 -65.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094654829.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.134 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds