Wall clock time and date at job start Mon Mar 30 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20828 * 119.99888 * 2 1 4 4 C 1.47563 * 120.00422 * 179.97438 * 2 1 3 5 5 C 1.40250 * 120.90513 * 359.97438 * 4 2 1 6 6 C 1.37916 * 119.14399 * 180.02562 * 5 4 2 7 7 N 1.31916 * 121.03387 * 359.72598 * 6 5 4 8 8 C 1.32318 * 122.00388 * 0.56998 * 7 6 5 9 9 N 1.39030 * 119.62824 * 179.70762 * 8 7 6 10 10 C 1.46502 * 119.99866 * 170.46190 * 9 8 7 11 11 C 1.50702 * 109.47036 * 89.99388 * 10 9 8 12 12 H 1.07996 * 120.00287 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99653 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00149 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99761 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47449 * 90.00079 * 15 13 11 17 17 H 1.48503 * 109.47212 * 210.00131 * 15 13 11 18 18 H 1.48497 * 109.47268 * 329.99952 * 15 13 11 19 19 C 1.46496 * 120.00421 * 350.45510 * 9 8 7 20 20 C 1.53001 * 117.50229 * 193.72715 * 19 9 8 21 21 C 1.53005 * 117.49641 * 125.06816 * 19 9 8 22 22 C 1.39102 * 120.73474 * 359.42997 * 8 7 6 23 23 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47248 * 299.99930 * 1 2 3 25 25 H 1.08994 * 109.47107 * 60.00466 * 1 2 3 26 26 H 1.07996 * 120.42919 * 0.02562 * 5 4 2 27 27 H 1.08009 * 119.48400 * 179.97438 * 6 5 4 28 28 H 1.08993 * 109.47609 * 209.99829 * 10 9 8 29 29 H 1.09003 * 109.46849 * 330.00034 * 10 9 8 30 30 H 0.97005 * 120.00161 * 179.97438 * 14 13 11 31 31 H 1.08997 * 115.55011 * 339.40625 * 19 9 8 32 32 H 1.08999 * 117.49642 * 0.02562 * 20 19 9 33 33 H 1.09001 * 117.49685 * 145.02630 * 20 19 9 34 34 H 1.09004 * 117.49914 * 214.98187 * 21 19 9 35 35 H 1.09001 * 117.49728 * 0.02562 * 21 19 9 36 36 H 1.08002 * 120.55142 * 180.30243 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 6 2.2449 -1.2779 0.0006 5 6 1.5630 -2.5035 0.0017 6 6 2.2890 -3.6760 0.0027 7 7 3.6081 -3.6592 -0.0027 8 6 4.2950 -2.5283 0.0018 9 7 5.6847 -2.5682 0.0019 10 6 6.4528 -1.3378 -0.2034 11 6 6.7226 -0.6859 1.1283 12 1 6.3587 -1.1427 2.0367 13 6 7.4350 0.4932 1.1869 14 7 7.8786 1.0491 0.0807 15 14 7.7700 1.3008 2.8376 16 1 9.0507 0.7891 3.3883 17 1 7.8606 2.7723 2.6594 18 1 6.6651 0.9832 3.7774 19 6 6.3810 -3.8406 0.2074 20 6 7.8782 -3.7847 0.5176 21 6 7.3977 -4.2688 -0.8528 22 6 3.6421 -1.3000 0.0007 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 0.4833 -2.5287 0.0017 27 1 1.7695 -4.6230 0.0040 28 1 7.3988 -1.5767 -0.6893 29 1 5.8831 -0.6547 -0.8335 30 1 8.3794 1.8788 0.1219 31 1 5.7961 -4.6241 0.6892 32 1 8.3450 -2.8011 0.5692 33 1 8.2783 -4.5316 1.2033 34 1 7.4820 -5.3341 -1.0681 35 1 7.5488 -3.6036 -1.7029 36 1 4.2058 -0.3787 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094997224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:26 Heat of formation + Delta-G solvation = 38.067020 kcal Electronic energy + Delta-G solvation = -19204.135241 eV Core-core repulsion = 16268.735369 eV Total energy + Delta-G solvation = -2935.399872 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10122 -38.71386 -37.32464 -33.91959 -32.82670 -32.15000 -29.96227 -29.07886 -26.98671 -24.18893 -23.37335 -21.98504 -21.75527 -20.60668 -18.79184 -17.24928 -16.48165 -16.38025 -15.56682 -14.94594 -14.88235 -14.76652 -14.40727 -13.96659 -13.76576 -13.54381 -13.41648 -12.49901 -12.32501 -12.10624 -11.92520 -11.48401 -11.26779 -11.07596 -10.88261 -10.73025 -10.56541 -10.13989 -9.87183 -9.72919 -9.56189 -9.41700 -8.97332 -8.90527 -8.53769 -6.76550 -6.10808 -4.21560 1.02807 1.81981 2.81706 3.26197 3.33490 3.37234 3.64851 4.21632 4.30967 4.37122 4.64380 4.92799 5.08610 5.15843 5.19194 5.42106 5.44666 5.51496 5.54647 5.62848 5.70398 5.78257 5.88001 6.13438 6.19313 6.25344 6.44698 6.52418 6.64417 6.82775 6.91590 7.12210 7.19784 7.67603 7.73310 7.86249 8.07710 8.27226 8.65339 8.89213 9.45734 10.92073 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.008338 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.802219 B = 3357.203580 C = 4913.371730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.393 3.607 3 O -0.444 6.444 4 C -0.097 4.097 5 C -0.221 4.221 6 C 0.133 3.867 7 N -0.540 5.540 8 C 0.412 3.588 9 N -0.558 5.558 10 C 0.249 3.751 11 C -0.533 4.533 12 H 0.061 0.939 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.106 3.894 20 C -0.184 4.184 21 C -0.205 4.205 22 C -0.159 4.159 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.150 0.850 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.265 0.735 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 -7.960 -0.893 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.270 3.730 3 O -0.317 6.317 4 C -0.105 4.105 5 C -0.245 4.245 6 C -0.024 4.024 7 N -0.260 5.260 8 C 0.175 3.825 9 N -0.264 5.264 10 C 0.129 3.871 11 C -0.572 4.572 12 H 0.080 0.920 13 C -0.138 4.138 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.000 4.000 20 C -0.222 4.222 21 C -0.244 4.244 22 C -0.184 4.184 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.149 0.851 27 H 0.167 0.833 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.750 -7.958 -0.977 12.623 hybrid contribution -0.192 1.183 0.871 1.482 sum -9.942 -6.775 -0.106 12.031 Atomic orbital electron populations 1.22210 0.93970 1.04768 1.04569 1.22488 0.91460 0.87652 0.71445 1.90472 1.72019 1.34303 1.34868 1.20615 0.93954 0.94860 1.01119 1.21852 1.00346 0.92402 1.09915 1.22187 0.88653 0.97486 0.94103 1.67063 1.09215 1.29413 1.20263 1.18319 0.85688 0.88407 0.90093 1.46619 1.00259 1.08303 1.71243 1.19422 0.91198 0.79185 0.97270 1.21472 1.35297 1.07407 0.93017 0.92037 1.24935 0.95338 0.96697 0.96814 1.69916 1.36767 1.19470 1.26778 0.86507 0.78667 0.78577 0.83828 1.20533 1.21034 1.19787 1.21292 0.89078 0.88024 1.01612 1.23411 0.97150 1.03962 0.97708 1.23368 1.06370 1.00757 0.93930 1.22043 0.93524 0.99556 1.03324 0.89664 0.89024 0.89047 0.85138 0.83296 0.94110 0.94643 0.92499 0.86134 0.86540 0.89207 0.89256 0.89073 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 10.21 36.00 0.37 -1.65 16 2 C 0.39 6.27 7.24 -30.51 -0.22 6.05 16 3 O -0.44 -8.96 17.16 5.94 0.10 -8.86 16 4 C -0.10 -1.66 5.90 -104.78 -0.62 -2.28 16 5 C -0.22 -3.05 9.51 -38.94 -0.37 -3.42 16 6 C 0.13 1.96 11.16 -17.63 -0.20 1.76 16 7 N -0.54 -9.96 9.24 -12.49 -0.12 -10.07 16 8 C 0.41 8.61 7.34 -155.08 -1.14 7.47 16 9 N -0.56 -12.16 2.92 -167.64 -0.49 -12.65 16 10 C 0.25 6.17 4.03 -5.19 -0.02 6.14 16 11 C -0.53 -14.34 8.64 -34.44 -0.30 -14.63 16 12 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 15 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 19 C 0.11 2.01 6.26 -67.93 -0.43 1.59 16 20 C -0.18 -3.31 9.73 -26.69 -0.26 -3.56 16 21 C -0.21 -3.45 10.02 -26.69 -0.27 -3.72 16 22 C -0.16 -3.33 8.69 -38.70 -0.34 -3.67 16 23 H 0.08 0.67 5.70 -51.93 -0.30 0.37 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.13 1.27 6.06 -52.49 -0.32 0.95 16 27 H 0.15 1.61 8.06 -52.48 -0.42 1.18 16 28 H 0.04 1.05 6.25 -51.93 -0.32 0.73 16 29 H 0.04 0.95 6.60 -51.93 -0.34 0.61 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.12 2.18 7.63 -51.93 -0.40 1.78 16 32 H 0.12 2.44 6.29 -51.93 -0.33 2.12 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.64 7.82 -51.93 -0.41 1.23 16 36 H 0.16 3.74 5.91 -52.49 -0.31 3.43 16 LS Contribution 306.66 15.07 4.62 4.62 Total: -1.00 -30.55 306.66 -8.43 -38.98 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.38 Total: 4.44 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -3.88 Total: -8.24 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.13 Total: -47.43 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.10 Total: -8.86 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.55 -8.43 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094997224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.044 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds